Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013950

Physical Location & Seq

Genomic Coordinates Forward (+)

6476925 .. 6478490

Gene Structure 1566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G119700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGCCATAAATGTTGCAGCAAACAGAAAGTCAAGAGAGGACTATGGTCCCCTGAAGAAGATGAAATGCTAATCAATCACATAAACACCTACGGCCATGGTTCATGGAGCTCTATCCCAAAACTAGCTGGTTTGCAGAGGTGTGGAAAGAGTTGCAGATTAAGGTGGATAAACTATTTGAGACCAGATCTCAAGAGGGGTTCATTTTCTGAGCAAGAAGAGAGAACCATCATAGATGTTCATAGGATTTTGGGCAACAAATGGGCTCAGATAGCCAAGCATTTGCCAGGTAGAACAGATAATGAAGTCAAGAATTTCTGGAACTCATGCATCAAGAAGAAGCTCATTGCACAAGGTTTAGATCCCAACACACACAATCTTCTCCCTTCTTCCAAAACTAACCATAGCACCAACAACAACATTAGTGAATGCTCATTTTATCCAACTCTGCCTAAACCCTCTTATTTTTTCCCTGTAAATTCACATGTCTCAGACACTTCCATAGACATATTGAAAGCACATTTTCAAGCATTATCTTCTATTTCCTCCTCTCCTGATACTAATCATATCAACCCTGACCACTCATTGCACGGAAGCTCAACCCTATCATCAGTCTACGAATACCGAAACCATAATACTGTTTGGACTCTGCAAGAAAAACTTAATTCAAATGCTTTCATGGAGGCCATGAATCAACCCTCAGTTGGAGCTAGTGTCCCAACCTCCTCTTGTCACTCATATCCACTATCAGAGCTTGAGATTGTAAATGAGAATTGCAAATGGGGCACTGGTAACTTTGAACCCACAAAACCTGATCAAGAAATGTTTATGCAACCGCAGGAGGACAAGGCTTGTGAAGTGGGAATTGAAAAGGCCAATATGTTGATTGATGAGCAGACCAATATGGATGCTTCATTTGGGAGCTCTAACTCTGACTTCGATTTTGCGGAGTCTACACAATTGCCTTATGGATTGTATAATTACCATCTCAGTCCAATGATGGATCAACTTCAATGGAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

342

Amino Acids

38.6

Weight (kDa)

6.2

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57560 AT1G57560
fragaria_vesca	FvH4_3g13230
malus_domestica	MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica	Prupe.4G119700_v2.0.a1
pyrus_communis	pycom10g18970
rosa_chinensis	RchiOBHm_Chr5g0021591
rosa_laevigata	RLG00000032616
rosa_multiflora	Rmu_sc0016972.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057060
rosa_rugosa	Rorug05G0067500
rosa_samantha	Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana	Rw0G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	615, 953
AciI	CCGC	2 cut(s)	836, 947
AclWI	GGATC	2 cut(s)	356, 1011
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	313, 478
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	704
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	6 cut(s)	514, 527, 669, 800, 869, 1013
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	7 cut(s)	111, 128, 343, 597, 710, 754, 924
AluI	AGCT	7 cut(s)	111, 128, 343, 597, 710, 754, 924
Alw21I	GWGCWC	2 cut(s)	113, 926
Alw26I	GTCTC	2 cut(s)	175, 493
AlwI	GGATC	2 cut(s)	356, 1011
AoxI	GGCC	4 cut(s)	4, 94, 684, 873
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	2 cut(s)	313, 478
ArsI	GACNNNNNNTTYG	4 cut(s)	15, 47, 926, 958
AspS9I	GGNCC	2 cut(s)	4, 48
AvaII	GGWCC	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	788
BanII	GRGCYC	3 cut(s)	113, 268, 926
Bbv12I	GWGCWC	2 cut(s)	113, 926
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	3 cut(s)	236, 993, 994
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	2 cut(s)	175, 493
BfaI	CTAG	2 cut(s)	125, 711
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	4, 48
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	339, 898
BoxI	GACNNNNGTC	1 cut(s)	46
BpuEI	CTTGAG	2 cut(s)	176, 776
BsaBI	GATNNNNATC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse1I	ACTGG	1 cut(s)	793
Bse3DI	GCAATG	2 cut(s)	345, 584
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	913
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMI	GCAATG	2 cut(s)	345, 584
BseMII	CTCAG	5 cut(s)	201, 281, 504, 714, 1003
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	2 cut(s)	538, 715
BseSI	GKGCMC	1 cut(s)	788
BseXI	GCAGC	1 cut(s)	30
BshFI	GGCC	4 cut(s)	6, 96, 686, 875
BsiHKAI	GWGCWC	2 cut(s)	113, 926
BslFI	GGGAC	2 cut(s)	34, 701
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	2 cut(s)	175, 493
BsmFI	GGGAC	2 cut(s)	34, 701
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	4 cut(s)	6, 96, 686, 875
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	4 cut(s)	113, 268, 788, 926
Bsp143I	GATC	4 cut(s)	187, 361, 814, 1003
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	2 cut(s)	836, 947
BspANI	GGCC	4 cut(s)	6, 96, 686, 875
BspCNI	CTCAG	5 cut(s)	202, 280, 503, 713, 1002
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	356, 1011
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	345, 584
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	4 cut(s)	187, 361, 814, 1003
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	1 cut(s)	213
BstDEI	CTNAG	5 cut(s)	210, 267, 490, 700, 989
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	913
BstKTI	GATC	4 cut(s)	190, 364, 817, 1006
BstMAI	GTCTC	2 cut(s)	175, 493
BstMBI	GATC	4 cut(s)	187, 361, 814, 1003
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 783
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	488
BstPAI	GACNNNNGTC	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	788
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	2 cut(s)	187, 361
BstYI	RGATCY	2 cut(s)	187, 361
BsuRI	GGCC	4 cut(s)	6, 96, 686, 875
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	913
BtsIMutI	CAGTG	1 cut(s)	786
Cfr13I	GGNCC	2 cut(s)	4, 48
CviAII	CATG	6 cut(s)	98, 105, 327, 485, 679, 688
DdeI	CTNAG	5 cut(s)	210, 267, 490, 700, 989
DpnI	GATC	4 cut(s)	189, 363, 816, 1005
DpnII	GATC	4 cut(s)	187, 361, 814, 1003
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	2 cut(s)	111, 924
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	3 cut(s)	113, 268, 926
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	48
Eco53kI	GAGCTC	2 cut(s)	111, 924
Eco57I	CTGAAG	1 cut(s)	75
EcoICRI	GAGCTC	2 cut(s)	111, 924
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	332
EcoT38I	GRGCYC	3 cut(s)	113, 268, 926
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	6 cut(s)	101, 108, 330, 488, 682, 691
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	2 cut(s)	34, 701
FatI	CATG	6 cut(s)	97, 104, 326, 484, 678, 687
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	2 cut(s)	615, 953
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	920
FriOI	GRGCYC	3 cut(s)	113, 268, 926
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	2 cut(s)	125, 711
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	4 cut(s)	6, 96, 686, 875
Hin1II	CATG	6 cut(s)	101, 108, 330, 488, 682, 691
HinfI	GANTC	3 cut(s)	646, 691, 950
Hpy166II	GTNNAC	2 cut(s)	616, 954
Hpy188I	TCNGA	5 cut(s)	211, 270, 493, 751, 934
Hpy188III	TCNNGA	7 cut(s)	34, 193, 310, 319, 334, 554, 818
Hpy8I	GTNNAC	2 cut(s)	616, 954
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4V	TGCA	9 cut(s)	18, 136, 156, 330, 350, 589, 652, 777, 832
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 783
HpyF3I	CTNAG	5 cut(s)	210, 267, 490, 700, 989
Hsp92II	CATG	6 cut(s)	101, 108, 330, 488, 682, 691
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	4 cut(s)	187, 361, 814, 1003
LmnI	GCTCC	3 cut(s)	108, 707, 921
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	2 cut(s)	339, 898
MaeI	CTAG	2 cut(s)	125, 711
MaeIII	GTNAC	2 cut(s)	731, 791
MalI	GATC	4 cut(s)	189, 363, 816, 1005
MboI	GATC	4 cut(s)	187, 361, 814, 1003
MboII	GAAGA	7 cut(s)	68, 71, 230, 349, 371, 381, 528
MfeI	CAATTG	1 cut(s)	959
MflI	RGATCY	2 cut(s)	187, 361
MhlI	GDGCHC	4 cut(s)	113, 268, 788, 926
MluCI	AATT	7 cut(s)	313, 478, 664, 772, 864, 959, 979
MlyI	GAGTC	2 cut(s)	640, 959
MmeI	TCCRAC	2 cut(s)	467, 685
Mph1103I	ATGCAT	1 cut(s)	332
MseI	TTAA	2 cut(s)	161, 663
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	959
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	272, 783
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	4 cut(s)	187, 361, 814, 1003
NlaIII	CATG	6 cut(s)	101, 108, 330, 488, 682, 691
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	731
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	1 cut(s)	488
PciI	ACATGT	1 cut(s)	484
PctI	GAATGC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	691
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	2 cut(s)	640, 958
PpsI	GAGTC	2 cut(s)	640, 958
PscI	ACATGT	1 cut(s)	484
PshAI	GACNNNNGTC	1 cut(s)	46
Psp124BI	GAGCTC	2 cut(s)	113, 926
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	2 cut(s)	4, 48
PsuI	RGATCY	2 cut(s)	187, 361
SacI	GAGCTC	2 cut(s)	113, 926
SaqAI	TTAA	2 cut(s)	161, 663
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	4 cut(s)	187, 361, 814, 1003
Sau96I	GGNCC	2 cut(s)	4, 48
SchI	GAGTC	2 cut(s)	640, 959
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	4 cut(s)	113, 268, 788, 926
SfaNI	GCATC	2 cut(s)	339, 898
SinI	GGWCC	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	191, 755
SmoI	CTYRAG	2 cut(s)	191, 755
Sse9I	AATT	7 cut(s)	313, 478, 664, 772, 864, 959, 979
SsiI	CCGC	2 cut(s)	836, 947
SspMI	CTAG	2 cut(s)	125, 711
SstI	GAGCTC	2 cut(s)	113, 926
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	640
TaqI	TCGA	1 cut(s)	939
TasI	AATT	7 cut(s)	313, 478, 664, 772, 864, 959, 979
TfiI	GAWTC	1 cut(s)	691
Tru1I	TTAA	2 cut(s)	161, 663
Tru9I	TTAA	2 cut(s)	161, 663
TscAI	CASTG	1 cut(s)	793
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	8 cut(s)	78, 93, 192, 230, 318, 667, 704, 903
TspGWI	ACGGA	1 cut(s)	606
TspRI	CASTG	1 cut(s)	793
VpaK11BI	GGWCC	1 cut(s)	48
XapI	RAATTY	2 cut(s)	313, 478
XceI	RCATGY	1 cut(s)	488
XmiI	GTMKAC	2 cut(s)	615, 953
XspI	CTAG	2 cut(s)	125, 711
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.