Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013950

Physical Location & Seq

Genomic Coordinates Reverse (-)

32315714 .. 32316919

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1225800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGCCATACCTGTTGCAGCAAACAGAAAGTTAAGAGAGGACTGTGGTCTCCTGAAGAAGATGAGAAGCTGTTGAATCACATCAACACCTATGGCCATGGTTCATGGAGCTCTGTCCCAGAACTAGCTGGTTTGGAGAGGTGTGGAAAGAGTTGCAGATTGAGGTGGATAAACTATTTGCGACCAGATCTCAAGAGGGGTTCATTTTCTGAGATAGAAGAGAGAACCATCGTTGAAGTTCATAGGATTTTAGGCAACAAATGGGCTCAGATAGCCAAGCATTTGCCAGGTAGAACAGACAATGAGGTCAAGAATTTTTGGAACTCATGCATCAAGAAGAAGCTCATTGCACAAGGTTTTGATCCCAACACCCACAATCTTCTCCCTTCTTCCAAAGCTAACCCTAGTAACATCAACAACAACAACAATAATAATATTCATGCATGCAATATGTTTTCTCCATCTTCTTTTTTCTCTGTAAATTCTTCACATGTCTCAGCAGATGCTTCCATAGACATATTGGAAGCAGCTTATCTCACATTACCTTCTACTTCGTCTCCAAATGCAAATCACGAAAGCTCACCCATATCAACCTATGAATTCCAAAACCCTAATATGGTTTGGAGTGAATTCCAAAACCCTAATATGGTTTGGAGTACTACTCCAGTCCAAGAGCAAATTAATCCAAATTTTTTAACAGAGTCCATGGAGATAAATAGTGTTCCAACAATCTCCACTTCTCACTCGTATCCAATATCAGAGCTTGAAAATATTGTAAATGAGAGCTTTCAACCCATAACTAAATCCACAAACCCAGAAGACATACAATTGCAGTCACAACAGGAGGAGGCTTGTGAAGTGGTGGAAGATGAGGAGACAAACATGGACGTTTCATTTGGAAGCTCTAACTTTGATATGAATTTTATGGAGTCTACAGCATTGCCTTGTGGAATGTATAATTACCAACTGAGTCCAATGGATCAACTTGCATGGAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

334

Amino Acids

37.56

Weight (kDa)

5.02

Isoelectric Point (pI)

59.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	4.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 75	1.8e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	66 - 109	6.3e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 115	2.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57560 AT1G57560
fragaria_vesca	FvH4_3g13230
malus_domestica	MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica	Prupe.4G119700_v2.0.a1
pyrus_communis	pycom10g18970
rosa_chinensis	RchiOBHm_Chr5g0021591
rosa_laevigata	RLG00000032616
rosa_multiflora	Rmu_sc0016972.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057060
rosa_rugosa	Rorug05G0067500
rosa_samantha	Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana	Rw0G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	932
AclWI	GGATC	2 cut(s)	356, 987
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	6 cut(s)	313, 481, 599, 629, 688, 919
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	2 cut(s)	616, 646
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	4 cut(s)	76, 236, 767, 791
AjnI	CCWGG	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	4 cut(s)	54, 499, 561, 869
AlwI	GGATC	2 cut(s)	356, 987
AoxI	GGCC	2 cut(s)	4, 94
ApeKI	GCWGC	2 cut(s)	18, 527
ApoI	RAATTY	6 cut(s)	313, 481, 599, 629, 688, 919
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AseI	ATTAAT	1 cut(s)	681
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	573
BalI	TGGCCA	1 cut(s)	96
BanII	GRGCYC	2 cut(s)	113, 268
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	30, 539
BccI	CCATC	2 cut(s)	236, 469
BciT130I	CCWGG	1 cut(s)	288
BciVI	GTATCC	1 cut(s)	759
BcoDI	GTCTC	4 cut(s)	54, 499, 561, 869
BfaI	CTAG	2 cut(s)	125, 405
BfmI	CTRYAG	1 cut(s)	933
BfuI	GTATCC	1 cut(s)	759
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	2 cut(s)	19, 528
BlsI	GCNGC	2 cut(s)	20, 529
BmcAI	AGTACT	1 cut(s)	658
Bme1390I	CCNGG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	339, 493
BoxI	GACNNNNGTC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	825
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
BpmI	CTGGAG	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	97, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	616, 646
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	2 cut(s)	345, 938
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	97, 705
BseLI	CCNNNNNNNGG	2 cut(s)	616, 646
BseMI	GCAATG	2 cut(s)	345, 938
BseMII	CTCAG	4 cut(s)	201, 281, 510, 959
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	2 cut(s)	860, 887
BseXI	GCAGC	2 cut(s)	30, 539
BshFI	GGCC	2 cut(s)	6, 96
BsiHKAI	GWGCWC	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	616, 646
BsmAI	GTCTC	4 cut(s)	54, 499, 561, 869
BsmBI	CGTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	6, 96
Bso31I	GGTCTC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	113, 268
Bsp143I	GATC	3 cut(s)	187, 361, 979
Bsp19I	CCATGG	2 cut(s)	97, 705
BspANI	GGCC	2 cut(s)	6, 96
BspCNI	CTCAG	4 cut(s)	202, 280, 509, 960
BspPI	GGATC	2 cut(s)	356, 987
BspTNI	GGTCTC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	345, 938
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	2 cut(s)	97, 705
BssMI	GATC	3 cut(s)	187, 361, 979
BssT1I	CCWWGG	2 cut(s)	97, 705
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	4 cut(s)	210, 267, 496, 968
BstDSI	CCRYGG	2 cut(s)	97, 705
BstKTI	GATC	3 cut(s)	190, 364, 982
BstMAI	GTCTC	4 cut(s)	54, 499, 561, 869
BstMBI	GATC	3 cut(s)	187, 361, 979
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	2 cut(s)	447, 494
BstPAI	GACNNNNGTC	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	933
BstV1I	GCAGC	2 cut(s)	30, 539
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	759
BsuRI	GGCC	2 cut(s)	6, 96
BtgI	CCRYGG	2 cut(s)	97, 705
Cac8I	GCNNGC	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	9 cut(s)	98, 105, 327, 440, 444, 491, 706, 883, 990
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	4 cut(s)	210, 267, 496, 968
DpnI	GATC	3 cut(s)	189, 363, 981
DpnII	GATC	3 cut(s)	187, 361, 979
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	97, 705
Eco24I	GRGCYC	2 cut(s)	113, 268
Eco31I	GGTCTC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	111
EcoRI	GAATTC	2 cut(s)	599, 629
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	2 cut(s)	97, 705
EcoT22I	ATGCAT	2 cut(s)	332, 445
EcoT38I	GRGCYC	2 cut(s)	113, 268
ErhI	CCWWGG	2 cut(s)	97, 705
Esp3I	CGTCTC	1 cut(s)	561
FaeI	CATG	9 cut(s)	101, 108, 330, 443, 447, 494, 709, 886, 993
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	9 cut(s)	97, 104, 326, 439, 443, 490, 705, 882, 989
FblI	GTMKAC	1 cut(s)	932
Fnu4HI	GCNGC	2 cut(s)	19, 528
FriOI	GRGCYC	2 cut(s)	113, 268
Fsp4HI	GCNGC	2 cut(s)	19, 528
FspBI	CTAG	2 cut(s)	125, 405
GluI	GCNGC	2 cut(s)	19, 528
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	2 cut(s)	6, 96
Hin1II	CATG	9 cut(s)	101, 108, 330, 443, 447, 494, 709, 886, 993
HinfI	GANTC	4 cut(s)	76, 701, 929, 970
HphI	GGTGA	1 cut(s)	573
Hpy166II	GTNNAC	1 cut(s)	933
Hpy188I	TCNGA	3 cut(s)	211, 270, 760
Hpy188III	TCNNGA	5 cut(s)	53, 193, 310, 334, 572
Hpy8I	GTNNAC	1 cut(s)	933
HpyAV	CCTTC	2 cut(s)	396, 555
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4IV	ACGT	1 cut(s)	888
HpyCH4V	TGCA	9 cut(s)	18, 156, 330, 350, 443, 447, 566, 832, 989
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	4 cut(s)	210, 267, 496, 968
HpySE526I	ACGT	1 cut(s)	888
Hsp92II	CATG	9 cut(s)	101, 108, 330, 443, 447, 494, 709, 886, 993
Kzo9I	GATC	3 cut(s)	187, 361, 979
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	2 cut(s)	30, 539
LweI	GCATC	2 cut(s)	339, 493
MaeI	CTAG	2 cut(s)	125, 405
MaeII	ACGT	1 cut(s)	888
MaeIII	GTNAC	2 cut(s)	407, 834
MalI	GATC	3 cut(s)	189, 363, 981
MboI	GATC	3 cut(s)	187, 361, 979
MfeI	CAATTG	1 cut(s)	827
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	113, 268
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	9 cut(s)	313, 481, 599, 629, 678, 688, 827, 919, 958
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	3 cut(s)	710, 938, 979
MmeI	TCCRAC	1 cut(s)	749
MnlI	CCTC	8 cut(s)	32, 132, 156, 189, 298, 838, 841, 865
Mox20I	TGGCCA	1 cut(s)	96
Mph1103I	ATGCAT	2 cut(s)	332, 445
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	3 cut(s)	33, 681, 695
Msp20I	TGGCCA	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	827
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	272
NcoI	CCATGG	2 cut(s)	97, 705
NdeII	GATC	3 cut(s)	187, 361, 979
NlaIII	CATG	9 cut(s)	101, 108, 330, 443, 447, 494, 709, 886, 993
NmuCI	GTSAC	1 cut(s)	834
NsiI	ATGCAT	2 cut(s)	332, 445
NspI	RCATGY	2 cut(s)	447, 494
PaeI	GCATGC	1 cut(s)	447
PciI	ACATGT	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	20, 529
PleI	GAGTC	3 cut(s)	709, 937, 978
PpsI	GAGTC	3 cut(s)	709, 937, 978
PscI	ACATGT	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	681
Psp124BI	GAGCTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	33, 681, 695
SatI	GCNGC	2 cut(s)	19, 528
Sau3AI	GATC	3 cut(s)	187, 361, 979
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	658
SchI	GAGTC	3 cut(s)	710, 938, 979
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	2 cut(s)	113, 268
SfaNI	GCATC	2 cut(s)	339, 493
SfcI	CTRYAG	1 cut(s)	933
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	447
Sse9I	AATT	9 cut(s)	313, 481, 599, 629, 678, 688, 827, 919, 958
SspI	AATATT	2 cut(s)	436, 772
SspMI	CTAG	2 cut(s)	125, 405
SstI	GAGCTC	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	97, 705
TaaI	ACNGT	1 cut(s)	45
TaiI	ACGT	1 cut(s)	891
TasI	AATT	9 cut(s)	313, 481, 599, 629, 678, 688, 827, 919, 958
TatI	WGTACW	1 cut(s)	656
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	3 cut(s)	33, 681, 695
Tru9I	TTAA	3 cut(s)	33, 681, 695
TseFI	GTSAC	1 cut(s)	834
TseI	GCWGC	2 cut(s)	18, 527
Tsp45I	GTSAC	1 cut(s)	834
TspDTI	ATGAA	7 cut(s)	93, 192, 230, 428, 612, 882, 932
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	6 cut(s)	313, 481, 599, 629, 688, 919
XceI	RCATGY	2 cut(s)	447, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	932
XspI	CTAG	2 cut(s)	125, 405
ZrmI	AGTACT	1 cut(s)	658
Zsp2I	ATGCAT	2 cut(s)	332, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.