Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013950

Physical Location & Seq

Genomic Coordinates Reverse (-)

37651961 .. 37653166

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1243900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGCCATAACTGTTGCAGCAAACAGAAAATTAAGAAAGGACTGTGGTCTCCTGAAGAAGATGAGAAGCTATTGAATCACATCAACACCTTTGGCCATGGTTCGTGGAGCTCTGTCCCAAAACTAGCTGGTTTGCAGAGGTGTGGGAAAAGTTGCAGATTGAGGTGGATAAACTATTTGAGACCAGATCTCAAGAGGGGTCCATTTTCTGAGATAGAAGAGAGAACCATCGTAGATGTTCATAGGATTTTAGGCAACAAATGGGCTCAGATAGCGAAGCATTTACCAGGTAGAACAGACAATGAGGTCAAGAATTTTTGGAACTCATGCATCAAGAAGAAGCTCATTGCACAAGGTTTTGATCCCAACACCCACAATCTTCTCCCTTCTTTCAAAGCTAACAACAACAACAACAATAATATTTATGCATGCAATATGTTTTCTCCATCTTCTTTTTTCTCTGTAAATTCTTCACATGTCTCAGCAGATACTTCCATAGACATATTGGAAGCACCTTATCTCACATTACCTTCTACTTCATCTCCACATACAAATCATGTCGATATCTCGTTGCATGAATGCTCAACCATATCAACCTATGAATTCCAAGTCCAAGAGCAAATTAATCCAAATGTTTTAACAGAATCCATGGGGATTAACAGTGTCCCAACAATCTCCACTTCTCACTTATATCCAATATCAGAGCTTGAAAATATTGTAAATGAGAGCTTTCAACCCATAACTAAATCCACAAACCCAAAAGACATATTGCAATCACAACAGGAGGAGGCTTGTGAAGTGGTGGAAAATGAGAAGCCCAGTGTGTTGAATGGTGCACAGACAAACATAGATGCTTCATTTGGGAGCTCTAACTTTGATCTGGATTTTATGGAGTGTACAGAATTGCCTTGTGGAATGTATAATTACCAACTGAGTCCAATGGATCAACTTACATGGAATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

322

Amino Acids

36.11

Weight (kDa)

5.66

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 60	9.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 75	5.6e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	66 - 109	4.3e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	69 - 115	3.1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57560 AT1G57560
fragaria_vesca	FvH4_3g13230
malus_domestica	MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica	Prupe.4G119700_v2.0.a1
pyrus_communis	pycom10g18970
rosa_chinensis	RchiOBHm_Chr5g0021591
rosa_laevigata	RLG00000032616
rosa_multiflora	Rmu_sc0016972.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057060
rosa_rugosa	Rorug05G0067500
rosa_samantha	Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana	Rw0G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AclWI	GGATC	2 cut(s)	356, 951
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	3 cut(s)	313, 466, 602
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	898
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	5 cut(s)	76, 394, 710, 734, 829
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	8 cut(s)	70, 111, 128, 343, 398, 706, 729, 867
AluI	AGCT	8 cut(s)	70, 111, 128, 343, 398, 706, 729, 867
Alw21I	GWGCWC	3 cut(s)	113, 838, 869
Alw26I	GTCTC	3 cut(s)	54, 175, 484
Alw44I	GTGCAC	1 cut(s)	834
AlwI	GGATC	2 cut(s)	356, 951
AoxI	GGCC	2 cut(s)	4, 94
ApaLI	GTGCAC	1 cut(s)	834
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	3 cut(s)	313, 466, 602
AseI	ATTAAT	1 cut(s)	624
AspS9I	GGNCC	2 cut(s)	4, 200
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	838
BalI	TGGCCA	1 cut(s)	96
BanII	GRGCYC	3 cut(s)	113, 268, 869
Bbv12I	GWGCWC	3 cut(s)	113, 838, 869
BbvI	GCAGC	1 cut(s)	30
BccI	CCATC	2 cut(s)	236, 454
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	3 cut(s)	54, 175, 484
BfaI	CTAG	1 cut(s)	125
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	4, 200
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	813
BmsI	GCATC	2 cut(s)	339, 841
BmuI	ACTGGG	1 cut(s)	813
BoxI	GACNNNNGTC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	176
BsaI	GGTCTC	2 cut(s)	54, 175
BsaJI	CCNNGG	2 cut(s)	97, 648
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bse1I	ACTGG	1 cut(s)	819
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	97, 648
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	4 cut(s)	201, 281, 495, 923
BseNI	ACTGG	1 cut(s)	819
BseRI	GAGGAG	1 cut(s)	800
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	1 cut(s)	30
BshFI	GGCC	2 cut(s)	6, 96
BsiHKAI	GWGCWC	3 cut(s)	113, 838, 869
BslFI	GGGAC	2 cut(s)	101, 650
BsmAI	GTCTC	3 cut(s)	54, 175, 484
BsmFI	GGGAC	2 cut(s)	101, 650
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	6, 96
Bso31I	GGTCTC	2 cut(s)	54, 175
Bsp1286I	GDGCHC	4 cut(s)	113, 268, 838, 869
Bsp1407I	TGTACA	1 cut(s)	896
Bsp143I	GATC	4 cut(s)	187, 361, 877, 943
Bsp19I	CCATGG	2 cut(s)	97, 648
BspANI	GGCC	2 cut(s)	6, 96
BspCNI	CTCAG	4 cut(s)	202, 280, 494, 924
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	2 cut(s)	356, 951
BspTNI	GGTCTC	2 cut(s)	54, 175
BsrDI	GCAATG	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	896
BsrI	ACTGG	1 cut(s)	819
BssECI	CCNNGG	2 cut(s)	97, 648
BssMI	GATC	4 cut(s)	187, 361, 877, 943
BssT1I	CCWWGG	2 cut(s)	97, 648
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	14, 45, 662
Bst6I	CTCTTC	1 cut(s)	213
BstAUI	TGTACA	1 cut(s)	896
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	4 cut(s)	210, 267, 481, 932
BstDSI	CCRYGG	2 cut(s)	97, 648
BstKTI	GATC	4 cut(s)	190, 364, 880, 946
BstMAI	GTCTC	3 cut(s)	54, 175, 484
BstMBI	GATC	4 cut(s)	187, 361, 877, 943
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	2 cut(s)	432, 479
BstPAI	GACNNNNGTC	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	838
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	6, 96
BtgI	CCRYGG	2 cut(s)	97, 648
BtsIMutI	CAGTG	2 cut(s)	667, 826
Cac8I	GCNNGC	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	4, 200
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	897
CviAII	CATG	8 cut(s)	98, 327, 429, 476, 557, 575, 649, 954
CviQI	GTAC	1 cut(s)	897
DdeI	CTNAG	4 cut(s)	210, 267, 481, 932
DpnI	GATC	4 cut(s)	189, 363, 879, 945
DpnII	GATC	4 cut(s)	187, 361, 877, 943
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	2 cut(s)	111, 867
Eco130I	CCWWGG	2 cut(s)	97, 648
Eco24I	GRGCYC	3 cut(s)	113, 268, 869
Eco31I	GGTCTC	2 cut(s)	54, 175
Eco32I	GATATC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	200
Eco53kI	GAGCTC	2 cut(s)	111, 867
Eco57I	CTGAAG	1 cut(s)	75
EcoICRI	GAGCTC	2 cut(s)	111, 867
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	97, 648
EcoT22I	ATGCAT	2 cut(s)	332, 430
EcoT38I	GRGCYC	3 cut(s)	113, 268, 869
ErhI	CCWWGG	2 cut(s)	97, 648
FaeI	CATG	8 cut(s)	101, 330, 432, 479, 560, 578, 652, 957
FaqI	GGGAC	2 cut(s)	101, 650
FatI	CATG	8 cut(s)	97, 326, 428, 475, 556, 574, 648, 953
Fnu4HI	GCNGC	1 cut(s)	19
FriOI	GRGCYC	3 cut(s)	113, 268, 869
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	6, 96
Hin1II	CATG	8 cut(s)	101, 330, 432, 479, 560, 578, 652, 957
HinfI	GANTC	3 cut(s)	76, 644, 934
Hpy166II	GTNNAC	2 cut(s)	836, 897
Hpy188I	TCNGA	3 cut(s)	211, 270, 703
Hpy188III	TCNNGA	5 cut(s)	53, 193, 310, 334, 881
Hpy8I	GTNNAC	2 cut(s)	836, 897
HpyAV	CCTTC	2 cut(s)	396, 540
HpyCH4III	ACNGT	3 cut(s)	14, 45, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	4 cut(s)	210, 267, 481, 932
Hsp92II	CATG	8 cut(s)	101, 330, 432, 479, 560, 578, 652, 957
Kzo9I	GATC	4 cut(s)	187, 361, 877, 943
LmnI	GCTCC	2 cut(s)	108, 864
LpnPI	CCDG	8 cut(s)	66, 114, 198, 273, 300, 767, 832, 866
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	2 cut(s)	339, 841
MabI	ACCWGGT	1 cut(s)	286
MaeI	CTAG	1 cut(s)	125
MalI	GATC	4 cut(s)	189, 363, 879, 945
MboI	GATC	4 cut(s)	187, 361, 877, 943
MboII	GAAGA	7 cut(s)	68, 71, 230, 349, 371, 441, 462
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	4 cut(s)	113, 268, 838, 869
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	7 cut(s)	30, 313, 466, 602, 621, 902, 922
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	943
MnlI	CCTC	6 cut(s)	132, 156, 189, 298, 778, 781
Mox20I	TGGCCA	1 cut(s)	96
Mph1103I	ATGCAT	2 cut(s)	332, 430
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	4 cut(s)	33, 624, 638, 657
Msp20I	TGGCCA	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	272
NcoI	CCATGG	2 cut(s)	97, 648
NdeII	GATC	4 cut(s)	187, 361, 877, 943
NlaIII	CATG	8 cut(s)	101, 330, 432, 479, 560, 578, 652, 957
NlaIV	GGNNCC	1 cut(s)	201
NsiI	ATGCAT	2 cut(s)	332, 430
NspI	RCATGY	2 cut(s)	432, 479
PaeI	GCATGC	1 cut(s)	432
PciI	ACATGT	1 cut(s)	475
PctI	GAATGC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	76, 644
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	942
PpsI	GAGTC	1 cut(s)	942
PscI	ACATGT	1 cut(s)	475
PshAI	GACNNNNGTC	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	624
Psp124BI	GAGCTC	2 cut(s)	113, 869
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	4, 200
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	898
RsaNI	GTAC	1 cut(s)	897
SacI	GAGCTC	2 cut(s)	113, 869
SaqAI	TTAA	4 cut(s)	33, 624, 638, 657
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	4 cut(s)	187, 361, 877, 943
Sau96I	GGNCC	2 cut(s)	4, 200
SchI	GAGTC	1 cut(s)	943
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	4 cut(s)	113, 268, 838, 869
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	2 cut(s)	339, 841
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	432
Sse9I	AATT	7 cut(s)	30, 313, 466, 602, 621, 902, 922
SspI	AATATT	2 cut(s)	421, 715
SspMI	CTAG	1 cut(s)	125
SstI	GAGCTC	2 cut(s)	113, 869
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	97, 648
TaaI	ACNGT	3 cut(s)	14, 45, 662
TaqI	TCGA	1 cut(s)	561
TasI	AATT	7 cut(s)	30, 313, 466, 602, 621, 902, 922
TatI	WGTACW	1 cut(s)	896
TfiI	GAWTC	2 cut(s)	76, 644
Tru1I	TTAA	4 cut(s)	33, 624, 638, 657
Tru9I	TTAA	4 cut(s)	33, 624, 638, 657
TscAI	CASTG	2 cut(s)	667, 826
TseI	GCWGC	1 cut(s)	18
TspDTI	ATGAA	5 cut(s)	230, 528, 591, 615, 846
TspRI	CASTG	2 cut(s)	667, 826
VneI	GTGCAC	1 cut(s)	834
VpaK11BI	GGWCC	1 cut(s)	200
VspI	ATTAAT	1 cut(s)	624
XapI	RAATTY	3 cut(s)	313, 466, 602
XceI	RCATGY	2 cut(s)	432, 479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XspI	CTAG	1 cut(s)	125
Zsp2I	ATGCAT	2 cut(s)	332, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.