pycom10g18970
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013950
Physical Location & Seq
Reverse (-)
22186456 .. 22187631
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18970.1

Sequence Viewer

Length: 1002 bp
ATGGGCCATAACTGTTGCAGCAAACAGAAAGTTAAGAGAGGACTGTGGTCTCCTGAAGAAGATGAGAAGCTATTGAATCACATCAACACCTATGGTCATGGTTCATGGAGCTCTGTCCCACAACTAGCTGGTTTGGAGAGGTGTGGAAAGAGTTGCAGATTGAGGTGGATAAACTATTTGCGACCAGATCTCAAGAGGGGTTCATTTTCTGAGATAGAAGAGAGAACCATCGTAGAAGTTCATAGGATTTTAGGCAACAAATGGGCTCAGATAGCCAAGCATTTGCCAGGTAGAACAGACAATGAGGTCAAGAATTTTTGGAACTCATGCATCAAGAAGAAGCTCATTGCACAAGGTTTTGATCCCAACACCCACAATCTTCTCCCTTCTTCCAAAGCTAACCCTAGTAACATCATCAACAACAACAACAACAATAATAATATTCATGCATGCAATATGTTTTCTTCATCTTCTGTTTTCTCTGTAAATTCTTCACATGTCTCAGCAGATACTTCCATAGACATATTGGAAGCACCTTATCTTACATTACCTTCTACTTCATCTCCAAATGCAAATCACGAAAGCTCAACCATATCAACCTATGAATTCCAAAACCCTAATATTGTTTGGAGTACTACTCCAGTCCAGGAGCAAATTAATCCAATTTTTTTACCAGAGTCCATGGGGATAAATAGTGTCCCAACAATCTCCACTTCTCACTCATATCCAATATCAGAGCTTGAAAATATTGTAAATGAGAGCTTTCAACCCATAACTAAATCCACAAACCCAGAAGACATACAATTGCAGTCTCAACAGGAGGAGGCTTGTGAAGTGGTGGAAGATGAGGAGGCCAATGGATTGGATGGTGCGCAGACAAACATGGATGTTTCATTTGGGAGCTCTAACTTTGATATGGATTTTATGGAGTCTACAGTATTGCCTTGTGGAATGTATAATTACCAACTGAGTCCAATGGATCAACTTGCATGGAATTGTTAG

Protein Analysis

334

Amino Acids

37.28

Weight (kDa)

5.06

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 4.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 75 3.1e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 109 6.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 69 - 115 2.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57560 AT1G57560
fragaria_vesca FvH4_3g13230
malus_domestica MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica Prupe.4G119700_v2.0.a1
pyrus_communis pycom10g18970
rosa_chinensis RchiOBHm_Chr5g0021591
rosa_laevigata RLG00000032616
rosa_multiflora Rmu_sc0016972.1_g000001
rosa_roxburghii Rroxscaffold_1G00057060
rosa_rugosa Rorug05G0067500
rosa_samantha Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana Rw0G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
Acc16I TGCGCA 1 cut(s) 873
AccI GTMKAC 1 cut(s) 932
AclWI GGATC 2 cut(s) 356, 987
AcsI RAATTY 3 cut(s) 313, 487, 605
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 634
AflIII ACRYGT 1 cut(s) 496
AgsI TTSAA 3 cut(s) 76, 743, 767
AjnI CCWGG 2 cut(s) 286, 645
AluBI AGCT 9 cut(s) 70, 111, 128, 343, 398, 585, 739, 762, 903
AluI AGCT 9 cut(s) 70, 111, 128, 343, 398, 585, 739, 762, 903
Alw21I GWGCWC 2 cut(s) 113, 905
Alw26I GTCTC 3 cut(s) 54, 505, 816
AlwI GGATC 2 cut(s) 356, 987
AoxI GGCC 2 cut(s) 4, 852
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 3 cut(s) 313, 487, 605
AseI ATTAAT 1 cut(s) 657
AspLEI GCGC 1 cut(s) 874
AspS9I GGNCC 1 cut(s) 4
BanII GRGCYC 3 cut(s) 113, 268, 905
BbsI GAAGAC 1 cut(s) 801
Bbv12I GWGCWC 2 cut(s) 113, 905
BbvI GCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 236, 860
BciT130I CCWGG 2 cut(s) 288, 647
BcoDI GTCTC 3 cut(s) 54, 505, 816
BfaI CTAG 2 cut(s) 125, 405
BfmI CTRYAG 1 cut(s) 933
BglII AGATCT 1 cut(s) 187
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 2 cut(s) 288, 647
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 2 cut(s) 288, 647
BmsI GCATC 1 cut(s) 339
BoxI GACNNNNGTC 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 801
BplI GAGNNNNNCTC 2 cut(s) 622, 654
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 681
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bse1I ACTGG 1 cut(s) 641
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 2 cut(s) 288, 647
BseDI CCNNGG 1 cut(s) 681
BseGI GGATG 2 cut(s) 871, 892
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 4 cut(s) 201, 281, 516, 959
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 2 cut(s) 836, 863
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 2 cut(s) 6, 854
BsiHKAI GWGCWC 2 cut(s) 113, 905
BslFI GGGAC 2 cut(s) 101, 683
BsmAI GTCTC 3 cut(s) 54, 505, 816
BsmFI GGGAC 2 cut(s) 101, 683
BsnI GGCC 2 cut(s) 6, 854
Bso31I GGTCTC 1 cut(s) 54
Bsp1286I GDGCHC 3 cut(s) 113, 268, 905
Bsp143I GATC 3 cut(s) 187, 361, 979
Bsp19I CCATGG 1 cut(s) 681
BspANI GGCC 2 cut(s) 6, 854
BspCNI CTCAG 4 cut(s) 202, 280, 515, 960
BspPI GGATC 2 cut(s) 356, 987
BspTNI GGTCTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 1 cut(s) 681
BssMI GATC 3 cut(s) 187, 361, 979
BssT1I CCWWGG 1 cut(s) 681
Bst2UI CCWGG 2 cut(s) 288, 647
Bst4CI ACNGT 3 cut(s) 14, 45, 937
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 4 cut(s) 210, 267, 502, 968
BstDSI CCRYGG 1 cut(s) 681
BstF5I GGATG 2 cut(s) 871, 892
BstHHI GCGC 1 cut(s) 874
BstKTI GATC 3 cut(s) 190, 364, 982
BstMAI GTCTC 3 cut(s) 54, 505, 816
BstMBI GATC 3 cut(s) 187, 361, 979
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 2 cut(s) 288, 647
BstNSI RCATGY 2 cut(s) 453, 500
BstPAI GACNNNNGTC 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 286, 645
BstSFI CTRYAG 1 cut(s) 933
BstV1I GCAGC 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 801
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 862
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 2 cut(s) 6, 854
BtgI CCRYGG 1 cut(s) 681
BtsCI GGATG 2 cut(s) 871, 892
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 1 cut(s) 874
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 633
CviAII CATG 9 cut(s) 98, 105, 327, 446, 450, 497, 682, 883, 990
CviQI GTAC 1 cut(s) 633
DdeI CTNAG 4 cut(s) 210, 267, 502, 968
DpnI GATC 3 cut(s) 189, 363, 981
DpnII GATC 3 cut(s) 187, 361, 979
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Ecl136II GAGCTC 2 cut(s) 111, 903
Eco130I CCWWGG 1 cut(s) 681
Eco24I GRGCYC 3 cut(s) 113, 268, 905
Eco31I GGTCTC 1 cut(s) 54
Eco53kI GAGCTC 2 cut(s) 111, 903
Eco57I CTGAAG 1 cut(s) 75
EcoICRI GAGCTC 2 cut(s) 111, 903
EcoRI GAATTC 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 286, 645
EcoT14I CCWWGG 1 cut(s) 681
EcoT22I ATGCAT 2 cut(s) 332, 451
EcoT38I GRGCYC 3 cut(s) 113, 268, 905
ErhI CCWWGG 1 cut(s) 681
FaeI CATG 9 cut(s) 101, 108, 330, 449, 453, 500, 685, 886, 993
FaqI GGGAC 2 cut(s) 101, 683
FatI CATG 9 cut(s) 97, 104, 326, 445, 449, 496, 681, 882, 989
FblI GTMKAC 1 cut(s) 932
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 2 cut(s) 878, 899
FriOI GRGCYC 3 cut(s) 113, 268, 905
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 2 cut(s) 125, 405
FspI TGCGCA 1 cut(s) 873
GlaI GCGC 1 cut(s) 873
GluI GCNGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 2 cut(s) 6, 854
HhaI GCGC 1 cut(s) 874
Hin1II CATG 9 cut(s) 101, 108, 330, 449, 453, 500, 685, 886, 993
Hin6I GCGC 1 cut(s) 872
HinP1I GCGC 1 cut(s) 872
HinfI GANTC 4 cut(s) 76, 677, 929, 970
Hpy166II GTNNAC 1 cut(s) 933
Hpy188I TCNGA 3 cut(s) 211, 270, 736
Hpy188III TCNNGA 5 cut(s) 53, 193, 310, 334, 578
Hpy8I GTNNAC 1 cut(s) 933
HpyAV CCTTC 2 cut(s) 396, 561
HpyCH4III ACNGT 3 cut(s) 14, 45, 937
HpyCH4V TGCA 9 cut(s) 18, 156, 330, 350, 449, 453, 572, 808, 989
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 4 cut(s) 210, 267, 502, 968
Hsp92II CATG 9 cut(s) 101, 108, 330, 449, 453, 500, 685, 886, 993
HspAI GCGC 1 cut(s) 872
Kzo9I GATC 3 cut(s) 187, 361, 979
LmnI GCTCC 3 cut(s) 108, 649, 900
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 339
MaeI CTAG 2 cut(s) 125, 405
MaeIII GTNAC 1 cut(s) 407
MalI GATC 3 cut(s) 189, 363, 981
MboI GATC 3 cut(s) 187, 361, 979
MfeI CAATTG 1 cut(s) 803
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 3 cut(s) 113, 268, 905
MluCI AATT 8 cut(s) 313, 487, 605, 654, 663, 803, 958, 994
MlyI GAGTC 3 cut(s) 686, 938, 979
MnlI CCTC 9 cut(s) 32, 132, 156, 189, 298, 814, 817, 841, 844
Mph1103I ATGCAT 2 cut(s) 332, 451
MseI TTAA 2 cut(s) 33, 657
MspR9I CCNGG 2 cut(s) 288, 647
MunI CAATTG 1 cut(s) 803
MvaI CCWGG 2 cut(s) 288, 647
MwoI GCNNNNNNNGC 1 cut(s) 272
NcoI CCATGG 1 cut(s) 681
NdeII GATC 3 cut(s) 187, 361, 979
NlaIII CATG 9 cut(s) 101, 108, 330, 449, 453, 500, 685, 886, 993
NsbI TGCGCA 1 cut(s) 873
NsiI ATGCAT 2 cut(s) 332, 451
NspI RCATGY 2 cut(s) 453, 500
PaeI GCATGC 1 cut(s) 453
PciI ACATGT 1 cut(s) 496
PfeI GAWTC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 645
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 3 cut(s) 685, 937, 978
PpsI GAGTC 3 cut(s) 685, 937, 978
PscI ACATGT 1 cut(s) 496
PshAI GACNNNNGTC 1 cut(s) 46
PshBI ATTAAT 1 cut(s) 657
Psp124BI GAGCTC 2 cut(s) 113, 905
Psp6I CCWGG 2 cut(s) 286, 645
PspGI CCWGG 2 cut(s) 286, 645
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
SacI GAGCTC 2 cut(s) 113, 905
SaqAI TTAA 2 cut(s) 33, 657
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 3 cut(s) 187, 361, 979
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 634
SchI GAGTC 3 cut(s) 686, 938, 979
ScrFI CCNGG 2 cut(s) 288, 647
SduI GDGCHC 3 cut(s) 113, 268, 905
SfaNI GCATC 1 cut(s) 339
SfcI CTRYAG 1 cut(s) 933
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SphI GCATGC 1 cut(s) 453
Sse9I AATT 8 cut(s) 313, 487, 605, 654, 663, 803, 958, 994
SspI AATATT 3 cut(s) 442, 622, 748
SspMI CTAG 2 cut(s) 125, 405
SstI GAGCTC 2 cut(s) 113, 905
StyD4I CCNGG 2 cut(s) 286, 645
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 3 cut(s) 14, 45, 937
TasI AATT 8 cut(s) 313, 487, 605, 654, 663, 803, 958, 994
TatI WGTACW 1 cut(s) 632
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 33, 657
Tru9I TTAA 2 cut(s) 33, 657
TseI GCWGC 1 cut(s) 18
TspDTI ATGAA 8 cut(s) 93, 192, 230, 434, 456, 549, 618, 882
VspI ATTAAT 1 cut(s) 657
XapI RAATTY 3 cut(s) 313, 487, 605
XceI RCATGY 2 cut(s) 453, 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 932
XspI CTAG 2 cut(s) 125, 405
ZrmI AGTACT 1 cut(s) 634
Zsp2I ATGCAT 2 cut(s) 332, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.