RchiOBHm_Chr5g0021591
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013950
Physical Location & Seq
Forward (+)
15733826 .. 15734806
981 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30164

Sequence Viewer

Length: 900 bp
ATGTCGATAAATACGGGCCATAACTGTTGCAGCAAACAGAAAGTGAAAAGAGGACTATGGTCTCCTGAAGAAGATGAGAAGCTAATGAATCACATACACAACTCTGGCCATGGTTCCTGGAGCTCTATACCAAAAATAGCTGGTTTGGAGAGGTGTGGGAAAAGTTGCAGGTTGAGGTGGATAAACTACTTGAGGCCAGATCTGAAGAGGGGTTCATTTTCTCAGCAAGAAGAGAGAATCATCATAGATGTTCATAGGGTTGTAGGCAACAGGTGGGCTCAGATAGCCAAGCAAATGCCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATCAAGAAGAAACTCATCTCTCAAGGTCTGGATCCCAACACTCACAATCTTATCATCCCAGCTGCTTCTGATTCCAAATCTAGCCATGATAGCAGCTCATTGCATGGAAGCTCATCAAGTACCATACCAACCTATTTATATCAAAGCCCTAATATGGTTTGGACCGATCATTTCCAAGAGCCATATCCAAGAGGAAGCCAACCCTCAATGGAAAAATCTAAAGTGCCGACTATCTCATCTTTTTCTCATCACTTCTATCCATCGGAGCTCGATATTATAATCGAAAATTGCAAAACATGGGGTACTGGTAGTAGCATTGAATCCACCACTGCAGAACCCGCAGAGATGGAATATATGTCAATGAAAGCAGAACAGAAAGAGGAAAGTTGTGAAGTGCAAACTGAAAACGGCAGCTGTTCTGTGTTGAATTATAATGGTCGGCAAACTAGTATGGATGCTTGTTCATTCGGGAGCTGTAACTTGTCAAATTTTGACTTTGTGGAGTCTACACTAGTGCCTTGTGAAATGGATTACCATCTGAGGCCAATAAGGCAATAA

Protein Analysis

299

Amino Acids

33.82

Weight (kDa)

6.63

Isoelectric Point (pI)

63.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 1.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 78 8.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 113 2.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 117 4.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57560 AT1G57560
fragaria_vesca FvH4_3g13230
malus_domestica MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica Prupe.4G119700_v2.0.a1
pyrus_communis pycom10g18970
rosa_chinensis RchiOBHm_Chr5g0021591
rosa_laevigata RLG00000032616
rosa_multiflora Rmu_sc0016972.1_g000001
rosa_roxburghii Rroxscaffold_1G00057060
rosa_rugosa Rorug05G0067500
rosa_samantha Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana Rw0G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 620, 774
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 848
AciI CCGC 1 cut(s) 681
AclWI GGATC 2 cut(s) 368, 381
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 2 cut(s) 325, 829
AcuI CTGAAG 2 cut(s) 87, 224
AfaI GTAC 2 cut(s) 463, 646
AfiI CCNNNNNNNGG 1 cut(s) 496
AgsI TTSAA 2 cut(s) 662, 769
AhlI ACTAGT 2 cut(s) 788, 853
AjnI CCWGG 2 cut(s) 116, 298
AluBI AGCT 9 cut(s) 82, 123, 140, 404, 438, 453, 610, 756, 816
AluI AGCT 9 cut(s) 82, 123, 140, 404, 438, 453, 610, 756, 816
Alw21I GWGCWC 2 cut(s) 125, 612
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 2 cut(s) 368, 381
AoxI GGCC 4 cut(s) 16, 106, 194, 884
ApeKI GCWGC 4 cut(s) 30, 404, 435, 753
ApoI RAATTY 2 cut(s) 325, 829
AspS9I GGNCC 2 cut(s) 16, 504
AvaII GGWCC 1 cut(s) 504
BalI TGGCCA 1 cut(s) 108
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 3 cut(s) 125, 280, 612
Bbv12I GWGCWC 2 cut(s) 125, 612
BbvI GCAGC 4 cut(s) 42, 391, 447, 765
BccI CCATC 3 cut(s) 610, 682, 885
BceAI ACGGC 1 cut(s) 766
BciT130I CCWGG 2 cut(s) 118, 300
BcoDI GTCTC 1 cut(s) 66
BcuI ACTAGT 2 cut(s) 788, 853
BfaI CTAG 3 cut(s) 423, 789, 854
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 159
BglI GCCNNNNNGGC 1 cut(s) 892
BglII AGATCT 1 cut(s) 199
BisI GCNGC 4 cut(s) 31, 405, 436, 754
BlsI GCNGC 4 cut(s) 32, 406, 437, 755
Bme1390I CCNGG 2 cut(s) 118, 300
Bme18I GGWCC 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 16, 504
BmiI GGNNCC 2 cut(s) 115, 375
BmrFI CCNGG 2 cut(s) 118, 300
BmsI GCATC 2 cut(s) 351, 787
BoxI GACNNNNGTC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 2 cut(s) 211, 348
BsaBI GATNNNNATC 1 cut(s) 876
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 652
Bse3DI GCAATG 1 cut(s) 440
Bse8I GATNNNNATC 1 cut(s) 876
BseBI CCWGG 2 cut(s) 118, 300
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 396, 802
BseJI GATNNNNATC 1 cut(s) 876
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 3 cut(s) 236, 293, 872
BseNI ACTGG 1 cut(s) 652
BseXI GCAGC 4 cut(s) 42, 391, 447, 765
BseYI CCCAGC 1 cut(s) 400
BshFI GGCC 4 cut(s) 18, 108, 196, 886
BsiHKAI GWGCWC 2 cut(s) 125, 612
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 4 cut(s) 18, 108, 196, 886
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 125, 280, 612
Bsp143I GATC 3 cut(s) 199, 373, 508
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 681
BspANI GGCC 4 cut(s) 18, 108, 196, 886
BspCNI CTCAG 3 cut(s) 235, 292, 873
BspLI GGNNCC 2 cut(s) 115, 375
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 2 cut(s) 368, 381
BspTNI GGTCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 440
BsrI ACTGG 1 cut(s) 652
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 3 cut(s) 199, 373, 508
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 118, 300
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 2 cut(s) 200, 225
BstDEI CTNAG 3 cut(s) 222, 279, 881
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 396, 802
BstKTI GATC 3 cut(s) 202, 376, 511
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 3 cut(s) 199, 373, 508
BstMWI GCNNNNNNNGC 4 cut(s) 284, 432, 680, 892
BstNI CCWGG 2 cut(s) 118, 300
BstPAI GACNNNNGTC 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 116, 298
BstSFI CTRYAG 1 cut(s) 672
BstV1I GCAGC 4 cut(s) 42, 391, 447, 765
BstX2I RGATCY 2 cut(s) 199, 373
BstYI RGATCY 2 cut(s) 199, 373
BsuRI GGCC 4 cut(s) 18, 108, 196, 886
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 2 cut(s) 396, 802
BtsI GCAGTG 1 cut(s) 669
BtsIMutI CAGTG 1 cut(s) 669
BveI ACCTGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 16, 504
Csp6I GTAC 2 cut(s) 462, 645
CviAII CATG 5 cut(s) 110, 339, 428, 446, 639
CviQI GTAC 2 cut(s) 462, 645
DdeI CTNAG 3 cut(s) 222, 279, 881
DpnI GATC 3 cut(s) 201, 375, 510
DpnII GATC 3 cut(s) 199, 373, 508
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 200, 225
EarI CTCTTC 2 cut(s) 200, 225
Ecl136II GAGCTC 2 cut(s) 123, 610
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 3 cut(s) 125, 280, 612
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 504
Eco53kI GAGCTC 2 cut(s) 123, 610
Eco57I CTGAAG 2 cut(s) 87, 224
EcoICRI GAGCTC 2 cut(s) 123, 610
EcoRII CCWGG 2 cut(s) 116, 298
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 344
EcoT38I GRGCYC 3 cut(s) 125, 280, 612
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 5 cut(s) 113, 342, 431, 449, 642
FatI CATG 5 cut(s) 109, 338, 427, 445, 638
FauI CCCGC 1 cut(s) 688
FblI GTMKAC 1 cut(s) 848
Fnu4HI GCNGC 4 cut(s) 31, 405, 436, 754
FokI GGATG 2 cut(s) 383, 809
FriOI GRGCYC 3 cut(s) 125, 280, 612
Fsp4HI GCNGC 4 cut(s) 31, 405, 436, 754
FspBI CTAG 3 cut(s) 423, 789, 854
GluI GCNGC 4 cut(s) 31, 405, 436, 754
GsaI CCCAGC 1 cut(s) 404
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 4 cut(s) 18, 108, 196, 886
Hin1II CATG 5 cut(s) 113, 342, 431, 449, 642
HinfI GANTC 5 cut(s) 88, 237, 413, 662, 845
Hpy166II GTNNAC 1 cut(s) 849
Hpy188I TCNGA 5 cut(s) 204, 282, 412, 607, 882
Hpy188III TCNNGA 6 cut(s) 65, 322, 331, 346, 371, 811
Hpy8I GTNNAC 1 cut(s) 849
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 7 cut(s) 30, 168, 342, 445, 633, 674, 739
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 432, 680, 892
HpyF3I CTNAG 3 cut(s) 222, 279, 881
Hsp92II CATG 5 cut(s) 113, 342, 431, 449, 642
Kzo9I GATC 3 cut(s) 199, 373, 508
LmnI GCTCC 3 cut(s) 120, 607, 813
Lsp1109I GCAGC 4 cut(s) 42, 391, 447, 765
LweI GCATC 2 cut(s) 351, 787
MaeI CTAG 3 cut(s) 423, 789, 854
MaeIII GTNAC 1 cut(s) 818
MalI GATC 3 cut(s) 201, 375, 510
MboI GATC 3 cut(s) 199, 373, 508
MboII GAAGA 6 cut(s) 80, 83, 217, 242, 315, 361
MflI RGATCY 2 cut(s) 199, 373
MhlI GDGCHC 3 cut(s) 125, 280, 612
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 4 cut(s) 325, 628, 769, 829
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 854
Mox20I TGGCCA 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 344
MscI TGGCCA 1 cut(s) 108
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 404, 756
MspR9I CCNGG 2 cut(s) 118, 300
MvaI CCWGG 2 cut(s) 118, 300
MwoI GCNNNNNNNGC 4 cut(s) 284, 432, 680, 892
NcoI CCATGG 1 cut(s) 109
NdeII GATC 3 cut(s) 199, 373, 508
NlaIII CATG 5 cut(s) 113, 342, 431, 449, 642
NlaIV GGNNCC 2 cut(s) 115, 375
NsiI ATGCAT 1 cut(s) 344
PfeI GAWTC 4 cut(s) 88, 237, 413, 662
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 4 cut(s) 32, 406, 437, 755
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
PshAI GACNNNNGTC 1 cut(s) 58
PsiI TTATAA 2 cut(s) 620, 774
Psp124BI GAGCTC 2 cut(s) 125, 612
Psp6I CCWGG 2 cut(s) 116, 298
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 2 cut(s) 116, 298
PspN4I GGNNCC 2 cut(s) 115, 375
PspPI GGNCC 2 cut(s) 16, 504
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 2 cut(s) 199, 373
PvuII CAGCTG 2 cut(s) 404, 756
RsaI GTAC 2 cut(s) 463, 646
RsaNI GTAC 2 cut(s) 462, 645
SacI GAGCTC 2 cut(s) 125, 612
SatI GCNGC 4 cut(s) 31, 405, 436, 754
Sau3AI GATC 3 cut(s) 199, 373, 508
Sau96I GGNCC 2 cut(s) 16, 504
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 2 cut(s) 118, 300
SduI GDGCHC 3 cut(s) 125, 280, 612
SfaNI GCATC 2 cut(s) 351, 787
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 1 cut(s) 504
SmlI CTYRAG 2 cut(s) 190, 363
SmoI CTYRAG 2 cut(s) 190, 363
SpeI ACTAGT 2 cut(s) 788, 853
Sse9I AATT 4 cut(s) 325, 628, 769, 829
SsiI CCGC 1 cut(s) 681
SspMI CTAG 3 cut(s) 423, 789, 854
SstI GAGCTC 2 cut(s) 125, 612
StyD4I CCNGG 2 cut(s) 116, 298
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 5, 612, 624
TaqII GACCGA 1 cut(s) 521
TasI AATT 4 cut(s) 325, 628, 769, 829
TfiI GAWTC 4 cut(s) 88, 237, 413, 662
TscAI CASTG 1 cut(s) 676
TseI GCWGC 4 cut(s) 30, 404, 435, 753
TspDTI ATGAA 5 cut(s) 101, 204, 242, 719, 795
TspRI CASTG 1 cut(s) 676
VpaK11BI GGWCC 1 cut(s) 504
XapI RAATTY 2 cut(s) 325, 829
XmiI GTMKAC 1 cut(s) 848
XspI CTAG 3 cut(s) 423, 789, 854
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.