Rw0G007030
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00263
OG0013950
Physical Location & Seq
Forward (+)
15095 .. 16022
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007030.1

Sequence Viewer

Length: 846 bp
ATGAATCACATACACAACTCTGGCCATGCTTCCTGGAGCTCTATACCAAAAATAGCTGGTTTGGAGAGGTGTGGGAAGAGTTGCAGGTTGAGGTGGATAAACTACTTGAGGCCAGATCTGAAGAGGGGTTCATTTTCTGAGCAAGAAGAGAGAATCATCATAGATGTTCATAGGGTTGTAGGCAACAGGTGGGCTCAGATAGCCAAGCAAATGCCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATCAAGAAGAAACTCATCTCTCAAGGTCTGGATCCCAACACTCACAATCTTATCATCCCAGCTGCTTCTGATTCCAAATCTAGCCATGATAGCAGCTCATTGCATGGAAGCTTATCAAGTACCATACCAACCTATTTATATCAAAGCCCTAATATGGTTTGGACCGATCATTTCCAAGAGCAATATCCAAGAGGAAGCCAACCCTCAATGGAAAAATCTAAAGTGCAGACTATCTCATCTTTTTCTCATCACTCCTATCCATCGGAGCTCGATATTATAATCGAAAATTGCAAAACATGGGGTACTGGTAGTAGCATTGAATCCACCACCGCAGAACCCGCAGAACCCGCAGAGATGGAATATATGTCAATGAAAGCAGAACAGAAAGAGGAAAGTTGTGAAGTGCAAACTGAAAACGGCAGCTGTTCTGTGTTGAATTATAATGGTCGGCAAACTAGTATGGATGCTAGTTCATTCGGGAGCTGTAACTTGTCAAATTTTGACTTTGTGGAGTCTACACTAGTGCCTTGTGAAATGGATTACCATCTGAGGCCAATAATGGATCAACTTGCATGTTATCGTAATTAG

Protein Analysis

281

Amino Acids

31.75

Weight (kDa)

6.0

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 36 3.1e-06 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 11 - 50 1.2e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 42 - 85 2.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 45 - 89 2.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57560 AT1G57560
fragaria_vesca FvH4_3g13230
malus_domestica MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica Prupe.4G119700_v2.0.a1
pyrus_communis pycom10g18970
rosa_chinensis RchiOBHm_Chr5g0021591
rosa_laevigata RLG00000032616
rosa_multiflora Rmu_sc0016972.1_g000001
rosa_roxburghii Rroxscaffold_1G00057060
rosa_rugosa Rorug05G0067500
rosa_samantha Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana Rw0G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 536, 699
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 773
AciI CCGC 3 cut(s) 588, 597, 606
AclWI GGATC 3 cut(s) 284, 297, 828
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 2 cut(s) 241, 754
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 379, 562
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 2 cut(s) 578, 694
AhlI ACTAGT 2 cut(s) 713, 778
AjnI CCWGG 2 cut(s) 32, 214
AluBI AGCT 8 cut(s) 39, 56, 320, 354, 369, 526, 681, 741
AluI AGCT 8 cut(s) 39, 56, 320, 354, 369, 526, 681, 741
Alw21I GWGCWC 2 cut(s) 41, 528
AlwI GGATC 3 cut(s) 284, 297, 828
AoxI GGCC 3 cut(s) 22, 110, 809
ApeKI GCWGC 3 cut(s) 320, 351, 678
ApoI RAATTY 2 cut(s) 241, 754
AspS9I GGNCC 1 cut(s) 420
AvaII GGWCC 1 cut(s) 420
BalI TGGCCA 1 cut(s) 24
BamHI GGATCC 1 cut(s) 289
BanII GRGCYC 3 cut(s) 41, 196, 528
Bbv12I GWGCWC 2 cut(s) 41, 528
BbvI GCAGC 3 cut(s) 307, 363, 690
BccI CCATC 3 cut(s) 526, 607, 810
BceAI ACGGC 1 cut(s) 691
BciT130I CCWGG 2 cut(s) 34, 216
BcuI ACTAGT 2 cut(s) 713, 778
BfaI CTAG 4 cut(s) 339, 714, 726, 779
BfuAI ACCTGC 1 cut(s) 75
BglII AGATCT 1 cut(s) 115
BisI GCNGC 3 cut(s) 321, 352, 679
BlsI GCNGC 3 cut(s) 322, 353, 680
Bme1390I CCNGG 2 cut(s) 34, 216
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 2 cut(s) 34, 216
BmsI GCATC 2 cut(s) 267, 712
BpmI CTGGAG 1 cut(s) 55
BpuEI CTTGAG 2 cut(s) 127, 264
BsaBI GATNNNNATC 1 cut(s) 801
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 568
Bse3DI GCAATG 1 cut(s) 356
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 2 cut(s) 34, 216
BseGI GGATG 2 cut(s) 312, 727
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 3 cut(s) 129, 209, 797
BseNI ACTGG 1 cut(s) 568
BseXI GCAGC 3 cut(s) 307, 363, 690
BseYI CCCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 503
BshFI GGCC 3 cut(s) 24, 112, 811
BsiHKAI GWGCWC 2 cut(s) 41, 528
BslI CCNNNNNNNGG 1 cut(s) 412
BsnI GGCC 3 cut(s) 24, 112, 811
Bsp1286I GDGCHC 3 cut(s) 41, 196, 528
Bsp143I GATC 4 cut(s) 115, 289, 424, 820
BspACI CCGC 3 cut(s) 588, 597, 606
BspANI GGCC 3 cut(s) 24, 112, 811
BspCNI CTCAG 3 cut(s) 130, 208, 798
BspLI GGNNCC 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 3 cut(s) 284, 297, 828
BsrDI GCAATG 1 cut(s) 356
BsrI ACTGG 1 cut(s) 568
BssMI GATC 4 cut(s) 115, 289, 424, 820
Bst2UI CCWGG 2 cut(s) 34, 216
Bst6I CTCTTC 3 cut(s) 71, 116, 141
BstDEI CTNAG 3 cut(s) 138, 195, 806
BstF5I GGATG 2 cut(s) 312, 727
BstKTI GATC 4 cut(s) 118, 292, 427, 823
BstMBI GATC 4 cut(s) 115, 289, 424, 820
BstMWI GCNNNNNNNGC 4 cut(s) 200, 348, 596, 605
BstNI CCWGG 2 cut(s) 34, 216
BstNSI RCATGY 1 cut(s) 834
BstSCI CCNGG 2 cut(s) 32, 214
BstV1I GCAGC 3 cut(s) 307, 363, 690
BstX2I RGATCY 2 cut(s) 115, 289
BstYI RGATCY 2 cut(s) 115, 289
BsuRI GGCC 3 cut(s) 24, 112, 811
BtsCI GGATG 2 cut(s) 312, 727
BveI ACCTGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 420
Csp6I GTAC 2 cut(s) 378, 561
CviAII CATG 6 cut(s) 26, 255, 344, 362, 555, 831
CviQI GTAC 2 cut(s) 378, 561
DdeI CTNAG 3 cut(s) 138, 195, 806
DpnI GATC 4 cut(s) 117, 291, 426, 822
DpnII GATC 4 cut(s) 115, 289, 424, 820
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 3 cut(s) 71, 116, 141
EarI CTCTTC 3 cut(s) 71, 116, 141
Ecl136II GAGCTC 2 cut(s) 39, 526
Eco24I GRGCYC 3 cut(s) 41, 196, 528
Eco47I GGWCC 1 cut(s) 420
Eco53kI GAGCTC 2 cut(s) 39, 526
Eco57I CTGAAG 1 cut(s) 140
EcoICRI GAGCTC 2 cut(s) 39, 526
EcoRII CCWGG 2 cut(s) 32, 214
EcoT22I ATGCAT 1 cut(s) 260
EcoT38I GRGCYC 3 cut(s) 41, 196, 528
FaeI CATG 6 cut(s) 29, 258, 347, 365, 558, 834
FatI CATG 6 cut(s) 25, 254, 343, 361, 554, 830
FauI CCCGC 2 cut(s) 604, 613
FblI GTMKAC 1 cut(s) 773
Fnu4HI GCNGC 3 cut(s) 321, 352, 679
FokI GGATG 2 cut(s) 299, 734
FriOI GRGCYC 3 cut(s) 41, 196, 528
Fsp4HI GCNGC 3 cut(s) 321, 352, 679
FspBI CTAG 4 cut(s) 339, 714, 726, 779
GluI GCNGC 3 cut(s) 321, 352, 679
GsaI CCCAGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 3 cut(s) 24, 112, 811
Hin1II CATG 6 cut(s) 29, 258, 347, 365, 558, 834
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 5 cut(s) 4, 153, 329, 578, 770
Hpy166II GTNNAC 1 cut(s) 774
Hpy188I TCNGA 6 cut(s) 120, 139, 198, 328, 523, 807
Hpy188III TCNNGA 5 cut(s) 238, 247, 262, 287, 736
Hpy8I GTNNAC 1 cut(s) 774
HpyCH4V TGCA 7 cut(s) 84, 258, 361, 484, 549, 664, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 348, 596, 605
HpyF3I CTNAG 3 cut(s) 138, 195, 806
Hsp92II CATG 6 cut(s) 29, 258, 347, 365, 558, 834
Kzo9I GATC 4 cut(s) 115, 289, 424, 820
LmnI GCTCC 3 cut(s) 36, 523, 738
Lsp1109I GCAGC 3 cut(s) 307, 363, 690
LweI GCATC 2 cut(s) 267, 712
MaeI CTAG 4 cut(s) 339, 714, 726, 779
MaeIII GTNAC 1 cut(s) 743
MalI GATC 4 cut(s) 117, 291, 426, 822
MboI GATC 4 cut(s) 115, 289, 424, 820
MboII GAAGA 5 cut(s) 88, 133, 158, 231, 277
MflI RGATCY 2 cut(s) 115, 289
MhlI GDGCHC 3 cut(s) 41, 196, 528
MlsI TGGCCA 1 cut(s) 24
MluCI AATT 5 cut(s) 241, 544, 694, 754, 841
MluNI TGGCCA 1 cut(s) 24
MlyI GAGTC 1 cut(s) 779
MnlI CCTC 9 cut(s) 60, 84, 102, 117, 226, 443, 472, 640, 801
Mox20I TGGCCA 1 cut(s) 24
Mph1103I ATGCAT 1 cut(s) 260
MscI TGGCCA 1 cut(s) 24
Msp20I TGGCCA 1 cut(s) 24
MspA1I CMGCKG 2 cut(s) 320, 681
MspR9I CCNGG 2 cut(s) 34, 216
MvaI CCWGG 2 cut(s) 34, 216
MwoI GCNNNNNNNGC 4 cut(s) 200, 348, 596, 605
NdeII GATC 4 cut(s) 115, 289, 424, 820
NlaIII CATG 6 cut(s) 29, 258, 347, 365, 558, 834
NlaIV GGNNCC 1 cut(s) 291
NsiI ATGCAT 1 cut(s) 260
NspI RCATGY 1 cut(s) 834
PfeI GAWTC 4 cut(s) 4, 153, 329, 578
PfoI TCCNGGA 1 cut(s) 32
PkrI GCNGC 3 cut(s) 322, 353, 680
PleI GAGTC 1 cut(s) 778
PpsI GAGTC 1 cut(s) 778
PsiI TTATAA 2 cut(s) 536, 699
Psp124BI GAGCTC 2 cut(s) 41, 528
Psp6I CCWGG 2 cut(s) 32, 214
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 2 cut(s) 32, 214
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 420
PsuI RGATCY 2 cut(s) 115, 289
PvuII CAGCTG 2 cut(s) 320, 681
RsaI GTAC 2 cut(s) 379, 562
RsaNI GTAC 2 cut(s) 378, 561
SacI GAGCTC 2 cut(s) 41, 528
SatI GCNGC 3 cut(s) 321, 352, 679
Sau3AI GATC 4 cut(s) 115, 289, 424, 820
Sau96I GGNCC 1 cut(s) 420
SchI GAGTC 1 cut(s) 779
ScrFI CCNGG 2 cut(s) 34, 216
SduI GDGCHC 3 cut(s) 41, 196, 528
SfaNI GCATC 2 cut(s) 267, 712
SinI GGWCC 1 cut(s) 420
SmlI CTYRAG 2 cut(s) 106, 279
SmoI CTYRAG 2 cut(s) 106, 279
SpeI ACTAGT 2 cut(s) 713, 778
Sse9I AATT 5 cut(s) 241, 544, 694, 754, 841
SsiI CCGC 3 cut(s) 588, 597, 606
SspMI CTAG 4 cut(s) 339, 714, 726, 779
SstI GAGCTC 2 cut(s) 41, 528
StyD4I CCNGG 2 cut(s) 32, 214
TaqI TCGA 2 cut(s) 528, 540
TaqII GACCGA 1 cut(s) 437
TasI AATT 5 cut(s) 241, 544, 694, 754, 841
TfiI GAWTC 4 cut(s) 4, 153, 329, 578
TseI GCWGC 3 cut(s) 320, 351, 678
TspDTI ATGAA 5 cut(s) 17, 120, 158, 644, 720
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 2 cut(s) 241, 754
XceI RCATGY 1 cut(s) 834
XmiI GTMKAC 1 cut(s) 773
XspI CTAG 4 cut(s) 339, 714, 726, 779
Zsp2I ATGCAT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.