Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016972.1

Orthogroup ID

OG0013950

Physical Location & Seq

Genomic Coordinates Forward (+)

2768 .. 3770

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016972.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgtcgataaatacgggccataactgttgcagcaaacagaaagtgaaaagaggactatggtctcctgaagaagatgagaagctaatgaatcacatacacaactctggccatggttcctggagctctataccaaaaatagctggtttggagaggtgtgggaagagttgcaggttgaggtggataaactacttgaggccagatctgaagaggggttcattttctgagcaagaagagagaatcatcatagatgttcatagggttgtaggcaacaggtgggctcagatagccaagcaaatgccaggaagaacagacaacgaggtcaagaatttctggaactcatgcatcaagaagaaactcatctctcaaggtctggatcccaacactcacaatcttatcatcccagctgcttctgattccaaatctagccatgatagcagctcattgcatggaagctcatcaagtaccataccaacctatttatatcaaagccctaatatggtttggaccgatcatttccaagagcaatatccaagaggaagccaaccctcaatggaaaaatctaaagtgcagactatctcatctttttctcatcactcctatccatcggagctcgatattataatcgaaaattgcaaaacatggggtactggtagtagcattgaatccaccaccgcagaacccgcagagatggaatatatgtcaatgaaggcagaacagaaagaggaaagttgtgaagtgcaaactgaaaacggcagctgttctgtgttgaattataatggtcggcaaactagtatggatgctagttcattcgggagctgtaacttgtcaaattttgactttgtggagtctacactagtgccttgtgaaatggattaccatctgaggccaataatggatcaacttggttgttatcgtaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

306

Amino Acids

34.6

Weight (kDa)

6.31

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57560 AT1G57560
fragaria_vesca	FvH4_3g13230
malus_domestica	MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica	Prupe.4G119700_v2.0.a1
pyrus_communis	pycom10g18970
rosa_chinensis	RchiOBHm_Chr5g0021591
rosa_laevigata	RLG00000032616
rosa_multiflora	Rmu_sc0016972.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057060
rosa_rugosa	Rorug05G0067500
rosa_samantha	Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana	Rw0G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	620, 774
AasI	GACNNNNNNGTC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	848
AciI	CCGC	2 cut(s)	672, 681
AclWI	GGATC	3 cut(s)	368, 381, 903
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	325, 829
AcuI	CTGAAG	2 cut(s)	87, 224
AfaI	GTAC	2 cut(s)	463, 646
AfiI	CCNNNNNNNGG	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	662, 769
AhlI	ACTAGT	2 cut(s)	788, 853
AjnI	CCWGG	2 cut(s)	116, 298
AluBI	AGCT	9 cut(s)	82, 123, 140, 404, 438, 453, 610, 756, 816
AluI	AGCT	9 cut(s)	82, 123, 140, 404, 438, 453, 610, 756, 816
Alw21I	GWGCWC	2 cut(s)	125, 612
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	3 cut(s)	368, 381, 903
AoxI	GGCC	4 cut(s)	16, 106, 194, 884
ApeKI	GCWGC	4 cut(s)	30, 404, 435, 753
ApoI	RAATTY	2 cut(s)	325, 829
AspS9I	GGNCC	2 cut(s)	16, 504
AvaII	GGWCC	1 cut(s)	504
BalI	TGGCCA	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	373
BanII	GRGCYC	3 cut(s)	125, 280, 612
Bbv12I	GWGCWC	2 cut(s)	125, 612
BbvI	GCAGC	4 cut(s)	42, 391, 447, 765
BccI	CCATC	3 cut(s)	610, 682, 885
BceAI	ACGGC	1 cut(s)	766
BciT130I	CCWGG	2 cut(s)	118, 300
BcoDI	GTCTC	1 cut(s)	66
BcuI	ACTAGT	2 cut(s)	788, 853
BfaI	CTAG	4 cut(s)	423, 789, 801, 854
BfuAI	ACCTGC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	4 cut(s)	31, 405, 436, 754
BlsI	GCNGC	4 cut(s)	32, 406, 437, 755
Bme1390I	CCNGG	2 cut(s)	118, 300
Bme18I	GGWCC	1 cut(s)	504
BmgT120I	GGNCC	2 cut(s)	16, 504
BmiI	GGNNCC	2 cut(s)	115, 375
BmrFI	CCNGG	2 cut(s)	118, 300
BmsI	GCATC	2 cut(s)	351, 787
BoxI	GACNNNNGTC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	139
BpuEI	CTTGAG	2 cut(s)	211, 348
BsaBI	GATNNNNATC	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	1 cut(s)	652
Bse3DI	GCAATG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	876
BseBI	CCWGG	2 cut(s)	118, 300
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	396, 802
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	3 cut(s)	213, 293, 872
BseNI	ACTGG	1 cut(s)	652
BseXI	GCAGC	4 cut(s)	42, 391, 447, 765
BseYI	CCCAGC	1 cut(s)	400
BsgI	GTGCAG	1 cut(s)	587
BshFI	GGCC	4 cut(s)	18, 108, 196, 886
BsiHKAI	GWGCWC	2 cut(s)	125, 612
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	4 cut(s)	18, 108, 196, 886
Bso31I	GGTCTC	1 cut(s)	66
Bsp1286I	GDGCHC	3 cut(s)	125, 280, 612
Bsp143I	GATC	4 cut(s)	199, 373, 508, 895
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	2 cut(s)	672, 681
BspANI	GGCC	4 cut(s)	18, 108, 196, 886
BspCNI	CTCAG	3 cut(s)	214, 292, 873
BspLI	GGNNCC	2 cut(s)	115, 375
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	368, 381, 903
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	652
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	199, 373, 508, 895
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	118, 300
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	3 cut(s)	155, 200, 225
BstDEI	CTNAG	3 cut(s)	222, 279, 881
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	396, 802
BstKTI	GATC	4 cut(s)	202, 376, 511, 898
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	4 cut(s)	199, 373, 508, 895
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 432, 680
BstNI	CCWGG	2 cut(s)	118, 300
BstPAI	GACNNNNGTC	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	116, 298
BstV1I	GCAGC	4 cut(s)	42, 391, 447, 765
BstX2I	RGATCY	2 cut(s)	199, 373
BstYI	RGATCY	2 cut(s)	199, 373
BsuRI	GGCC	4 cut(s)	18, 108, 196, 886
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	396, 802
BveI	ACCTGC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	16, 504
Csp6I	GTAC	2 cut(s)	462, 645
CviAII	CATG	5 cut(s)	110, 339, 428, 446, 639
CviQI	GTAC	2 cut(s)	462, 645
DdeI	CTNAG	3 cut(s)	222, 279, 881
DpnI	GATC	4 cut(s)	201, 375, 510, 897
DpnII	GATC	4 cut(s)	199, 373, 508, 895
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	3 cut(s)	155, 200, 225
EarI	CTCTTC	3 cut(s)	155, 200, 225
Ecl136II	GAGCTC	2 cut(s)	123, 610
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	3 cut(s)	125, 280, 612
Eco31I	GGTCTC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	504
Eco53kI	GAGCTC	2 cut(s)	123, 610
Eco57I	CTGAAG	2 cut(s)	87, 224
EcoICRI	GAGCTC	2 cut(s)	123, 610
EcoRII	CCWGG	2 cut(s)	116, 298
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	344
EcoT38I	GRGCYC	3 cut(s)	125, 280, 612
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	5 cut(s)	113, 342, 431, 449, 642
FatI	CATG	5 cut(s)	109, 338, 427, 445, 638
FauI	CCCGC	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	4 cut(s)	31, 405, 436, 754
FokI	GGATG	2 cut(s)	383, 809
FriOI	GRGCYC	3 cut(s)	125, 280, 612
Fsp4HI	GCNGC	4 cut(s)	31, 405, 436, 754
FspBI	CTAG	4 cut(s)	423, 789, 801, 854
GluI	GCNGC	4 cut(s)	31, 405, 436, 754
GsaI	CCCAGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	4 cut(s)	18, 108, 196, 886
Hin1II	CATG	5 cut(s)	113, 342, 431, 449, 642
HinfI	GANTC	5 cut(s)	88, 237, 413, 662, 845
Hpy166II	GTNNAC	1 cut(s)	849
Hpy188I	TCNGA	6 cut(s)	204, 223, 282, 412, 607, 882
Hpy188III	TCNNGA	6 cut(s)	65, 322, 331, 346, 371, 811
Hpy8I	GTNNAC	1 cut(s)	849
HpyAV	CCTTC	1 cut(s)	700
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	7 cut(s)	30, 168, 342, 445, 568, 633, 739
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 432, 680
HpyF3I	CTNAG	3 cut(s)	222, 279, 881
Hsp92II	CATG	5 cut(s)	113, 342, 431, 449, 642
Kzo9I	GATC	4 cut(s)	199, 373, 508, 895
LmnI	GCTCC	3 cut(s)	120, 607, 813
Lsp1109I	GCAGC	4 cut(s)	42, 391, 447, 765
LweI	GCATC	2 cut(s)	351, 787
MaeI	CTAG	4 cut(s)	423, 789, 801, 854
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	4 cut(s)	201, 375, 510, 897
MboI	GATC	4 cut(s)	199, 373, 508, 895
MboII	GAAGA	7 cut(s)	80, 83, 172, 217, 242, 315, 361
MflI	RGATCY	2 cut(s)	199, 373
MhlI	GDGCHC	3 cut(s)	125, 280, 612
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	5 cut(s)	325, 628, 769, 829, 916
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	854
Mox20I	TGGCCA	1 cut(s)	108
Mph1103I	ATGCAT	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	2 cut(s)	404, 756
MspR9I	CCNGG	2 cut(s)	118, 300
MvaI	CCWGG	2 cut(s)	118, 300
MwoI	GCNNNNNNNGC	3 cut(s)	284, 432, 680
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	4 cut(s)	199, 373, 508, 895
NlaIII	CATG	5 cut(s)	113, 342, 431, 449, 642
NlaIV	GGNNCC	2 cut(s)	115, 375
NsiI	ATGCAT	1 cut(s)	344
PfeI	GAWTC	4 cut(s)	88, 237, 413, 662
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	32, 406, 437, 755
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
PshAI	GACNNNNGTC	1 cut(s)	58
PsiI	TTATAA	2 cut(s)	620, 774
Psp124BI	GAGCTC	2 cut(s)	125, 612
Psp6I	CCWGG	2 cut(s)	116, 298
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	2 cut(s)	116, 298
PspN4I	GGNNCC	2 cut(s)	115, 375
PspPI	GGNCC	2 cut(s)	16, 504
PsuI	RGATCY	2 cut(s)	199, 373
PvuII	CAGCTG	2 cut(s)	404, 756
RsaI	GTAC	2 cut(s)	463, 646
RsaNI	GTAC	2 cut(s)	462, 645
SacI	GAGCTC	2 cut(s)	125, 612
SatI	GCNGC	4 cut(s)	31, 405, 436, 754
Sau3AI	GATC	4 cut(s)	199, 373, 508, 895
Sau96I	GGNCC	2 cut(s)	16, 504
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	2 cut(s)	118, 300
SduI	GDGCHC	3 cut(s)	125, 280, 612
SfaNI	GCATC	2 cut(s)	351, 787
SinI	GGWCC	1 cut(s)	504
SmlI	CTYRAG	2 cut(s)	190, 363
SmoI	CTYRAG	2 cut(s)	190, 363
SpeI	ACTAGT	2 cut(s)	788, 853
Sse9I	AATT	5 cut(s)	325, 628, 769, 829, 916
SsiI	CCGC	2 cut(s)	672, 681
SspMI	CTAG	4 cut(s)	423, 789, 801, 854
SstI	GAGCTC	2 cut(s)	125, 612
StyD4I	CCNGG	2 cut(s)	116, 298
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	5, 612, 624
TaqII	GACCGA	1 cut(s)	521
TasI	AATT	5 cut(s)	325, 628, 769, 829, 916
TfiI	GAWTC	4 cut(s)	88, 237, 413, 662
TseI	GCWGC	4 cut(s)	30, 404, 435, 753
TspDTI	ATGAA	5 cut(s)	101, 204, 242, 719, 795
VpaK11BI	GGWCC	1 cut(s)	504
XapI	RAATTY	2 cut(s)	325, 829
XmiI	GTMKAC	1 cut(s)	848
XspI	CTAG	4 cut(s)	423, 789, 801, 854
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.