Rroxscaffold_1G00057060
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013950
Physical Location & Seq
Reverse (-)
79079438 .. 79080496
1059 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00057060.1

Sequence Viewer

Length: 495 bp
ATGTCGATAAATACGGGCCATAACTGTTGCAGCAAACAGAAAGTGAAAAGAGGACTATGGTCTCCTGAAGAAGATGAGAAGCTAATGAATCACATACACAACTCTGGCCATGGTTCCTGGAGCTCTATACCAAAAATAGCTGGTTTGGAGAGGTGTGGGAAGAGTTGCAGGTTGAGGTGGATAAACTACTTGAGGCCAGATCTGAAGAGGGGTTCATTTTCTGAGCAAGAAGAGAGAATCATCATAGATGTTCATAGGGTTGTAGGCAACAGGTGGGCTCAGATAGCCAAGCAAATGCCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATCAAGAAGAAACTCATCTCTCAAGGTCTGGATCCCAACACTCACAATCTTATCATCCCAGCTGCTTCTGATTCCAAATCTAGCCATGATAGCAGCTCATTGCATGGGAAGCTCATCAAGTACCGTACCAACCTATTTATATCAAAGCCCTAA

Protein Analysis

164

Amino Acids

18.7

Weight (kDa)

9.77

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 4.7e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 78 4.9e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 113 8.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 117 9.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57560 AT1G57560
fragaria_vesca FvH4_3g13230
malus_domestica MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica Prupe.4G119700_v2.0.a1
pyrus_communis pycom10g18970
rosa_chinensis RchiOBHm_Chr5g0021591
rosa_laevigata RLG00000032616
rosa_multiflora Rmu_sc0016972.1_g000001
rosa_roxburghii Rroxscaffold_1G00057060
rosa_rugosa Rorug05G0067500
rosa_samantha Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana Rw0G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 159
AclWI GGATC 2 cut(s) 368, 381
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 2 cut(s) 87, 224
AfaI GTAC 2 cut(s) 464, 469
AjnI CCWGG 2 cut(s) 116, 298
AluBI AGCT 6 cut(s) 82, 123, 140, 404, 438, 454
AluI AGCT 6 cut(s) 82, 123, 140, 404, 438, 454
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 2 cut(s) 368, 381
AoxI GGCC 3 cut(s) 16, 106, 194
ApeKI GCWGC 3 cut(s) 30, 404, 435
ApoI RAATTY 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 108
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 2 cut(s) 125, 280
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 42, 391, 447
BciT130I CCWGG 2 cut(s) 118, 300
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 159
BglII AGATCT 1 cut(s) 199
BisI GCNGC 3 cut(s) 31, 405, 436
BlsI GCNGC 3 cut(s) 32, 406, 437
Bme1390I CCNGG 2 cut(s) 118, 300
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 115, 375
BmrFI CCNGG 2 cut(s) 118, 300
BmsI GCATC 1 cut(s) 351
BoxI GACNNNNGTC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 2 cut(s) 211, 348
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 440
BseBI CCWGG 2 cut(s) 118, 300
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 2 cut(s) 213, 293
BseXI GCAGC 3 cut(s) 42, 391, 447
BseYI CCCAGC 1 cut(s) 400
BshFI GGCC 3 cut(s) 18, 108, 196
BsiHKAI GWGCWC 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 3 cut(s) 18, 108, 196
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 125, 280
Bsp143I GATC 2 cut(s) 199, 373
Bsp19I CCATGG 1 cut(s) 109
BspANI GGCC 3 cut(s) 18, 108, 196
BspCNI CTCAG 2 cut(s) 214, 292
BspLI GGNNCC 2 cut(s) 115, 375
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 2 cut(s) 368, 381
BspTNI GGTCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 440
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 2 cut(s) 199, 373
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 118, 300
Bst4CI ACNGT 2 cut(s) 26, 467
Bst6I CTCTTC 3 cut(s) 155, 200, 225
BstDEI CTNAG 2 cut(s) 222, 279
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 396
BstKTI GATC 2 cut(s) 202, 376
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 2 cut(s) 199, 373
BstMWI GCNNNNNNNGC 3 cut(s) 284, 432, 451
BstNI CCWGG 2 cut(s) 118, 300
BstPAI GACNNNNGTC 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 116, 298
BstV1I GCAGC 3 cut(s) 42, 391, 447
BstX2I RGATCY 2 cut(s) 199, 373
BstYI RGATCY 2 cut(s) 199, 373
BsuRI GGCC 3 cut(s) 18, 108, 196
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 396
BveI ACCTGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 463, 468
CviAII CATG 4 cut(s) 110, 339, 428, 446
CviQI GTAC 2 cut(s) 463, 468
DdeI CTNAG 2 cut(s) 222, 279
DpnI GATC 2 cut(s) 201, 375
DpnII GATC 2 cut(s) 199, 373
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 3 cut(s) 155, 200, 225
EarI CTCTTC 3 cut(s) 155, 200, 225
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 125, 280
Eco31I GGTCTC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 87, 224
EcoICRI GAGCTC 1 cut(s) 123
EcoRII CCWGG 2 cut(s) 116, 298
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 344
EcoT38I GRGCYC 2 cut(s) 125, 280
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 113, 342, 431, 449
FatI CATG 4 cut(s) 109, 338, 427, 445
Fnu4HI GCNGC 3 cut(s) 31, 405, 436
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 2 cut(s) 125, 280
Fsp4HI GCNGC 3 cut(s) 31, 405, 436
FspBI CTAG 1 cut(s) 423
GluI GCNGC 3 cut(s) 31, 405, 436
GsaI CCCAGC 1 cut(s) 404
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 3 cut(s) 18, 108, 196
Hin1II CATG 4 cut(s) 113, 342, 431, 449
HinfI GANTC 3 cut(s) 88, 237, 413
Hpy188I TCNGA 4 cut(s) 204, 223, 282, 412
Hpy188III TCNNGA 5 cut(s) 65, 322, 331, 346, 371
HpyCH4III ACNGT 2 cut(s) 26, 467
HpyCH4V TGCA 4 cut(s) 30, 168, 342, 445
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 432, 451
HpyF3I CTNAG 2 cut(s) 222, 279
Hsp92II CATG 4 cut(s) 113, 342, 431, 449
Kzo9I GATC 2 cut(s) 199, 373
LmnI GCTCC 1 cut(s) 120
Lsp1109I GCAGC 3 cut(s) 42, 391, 447
LweI GCATC 1 cut(s) 351
MaeI CTAG 1 cut(s) 423
MalI GATC 2 cut(s) 201, 375
MboI GATC 2 cut(s) 199, 373
MboII GAAGA 7 cut(s) 80, 83, 172, 217, 242, 315, 361
MflI RGATCY 2 cut(s) 199, 373
MhlI GDGCHC 2 cut(s) 125, 280
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 1 cut(s) 325
MluNI TGGCCA 1 cut(s) 108
MnlI CCTC 6 cut(s) 44, 144, 168, 186, 201, 310
Mox20I TGGCCA 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 344
MscI TGGCCA 1 cut(s) 108
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 404
MspR9I CCNGG 2 cut(s) 118, 300
MvaI CCWGG 2 cut(s) 118, 300
MwoI GCNNNNNNNGC 3 cut(s) 284, 432, 451
NcoI CCATGG 1 cut(s) 109
NdeII GATC 2 cut(s) 199, 373
NlaIII CATG 4 cut(s) 113, 342, 431, 449
NlaIV GGNNCC 2 cut(s) 115, 375
NsiI ATGCAT 1 cut(s) 344
PfeI GAWTC 3 cut(s) 88, 237, 413
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 3 cut(s) 32, 406, 437
PshAI GACNNNNGTC 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 116, 298
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 2 cut(s) 116, 298
PspN4I GGNNCC 2 cut(s) 115, 375
PspPI GGNCC 1 cut(s) 16
PsuI RGATCY 2 cut(s) 199, 373
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 2 cut(s) 464, 469
RsaNI GTAC 2 cut(s) 463, 468
SacI GAGCTC 1 cut(s) 125
SatI GCNGC 3 cut(s) 31, 405, 436
Sau3AI GATC 2 cut(s) 199, 373
Sau96I GGNCC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 118, 300
SduI GDGCHC 2 cut(s) 125, 280
SfaNI GCATC 1 cut(s) 351
SmlI CTYRAG 2 cut(s) 190, 363
SmoI CTYRAG 2 cut(s) 190, 363
Sse9I AATT 1 cut(s) 325
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 116, 298
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 26, 467
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 325
TfiI GAWTC 3 cut(s) 88, 237, 413
TseI GCWGC 3 cut(s) 30, 404, 435
TspDTI ATGAA 3 cut(s) 101, 204, 242
XapI RAATTY 1 cut(s) 325
XspI CTAG 1 cut(s) 423
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.