Rh5AG156900
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013950
Physical Location & Seq
Forward (+)
16545152 .. 16546442
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG156900.1

Sequence Viewer

Length: 930 bp
ATGTCGATAAATACGGGCCATAACTGTTGCAGCAAACAGAAAGTGAAAAGAGGACTATGGTCTCCTGAAGAAGATGAGAAGCTAATGAATCACATACACAACTCTGGCCATGCTTCCTGGAGCTCTATACCAAAAATAGCTGGTTTGGAGAGGTGTGGGAAGAGTTGCAGGTTGAGGTGGATAAACTACTTGAGGCCAGATCTGAAGAGGGGTTCATTTTCTGAGCAAGAAGAGAGAATCATCATAGATGTTCATAGGGTTGTAGGCAACAGGTGGGCTCAGATAGCCAAGCAAATGCCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATCAAGAAGAAACTCATCTCTCAAGGTCTGGATCCCAACACTCACAATCTTATCATCCCAGCTGCTTCTGATTCCAAATCTAGCCATGATAGCAGCTCATTGCATGGAAGCTTATCAAGTACCATACCAACCTATTTATATCAAAGCCCTAATATGGTTTGGACCGATCATTTCCAAGAGCAATATCCAAGAGGAAGCCAACCCTCAATGGAAAAATCTAAAGTGCAGACTATCTCATCTTTTTCTCATCACTCCTATCCATCGGAGCTCGATATTATAATCGAAAATTGCAAAACATGGGGTACTGGTAGTAGCATTGAATCCACCACCGCAGAACCCGCAGAACCCGCAGAGATGGAATATATGTCAATGAAAGCAGAACAGAAAGAGGAAAGTTGTGAAGTGCAAACTGAAAACGGCAGCTGTTCTGTGTTGAATTATAATGGTCGGCAAACTAGTATGGATGCTAGTTCATTCGGGAGCTGTAACTTGTCAAATTTTGACTTTGTGGAGTCTACACTAGTGCCTTGTGAAATGGATTACCATCTGAGGCCAATAATGGATCAACTTGCATGTTATCGTAATTAG

Protein Analysis

309

Amino Acids

34.95

Weight (kDa)

6.18

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 6.2e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 78 2.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 113 2.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 117 2.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013950)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57560 AT1G57560
fragaria_vesca FvH4_3g13230
malus_domestica MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica Prupe.4G119700_v2.0.a1
pyrus_communis pycom10g18970
rosa_chinensis RchiOBHm_Chr5g0021591
rosa_laevigata RLG00000032616
rosa_multiflora Rmu_sc0016972.1_g000001
rosa_roxburghii Rroxscaffold_1G00057060
rosa_rugosa Rorug05G0067500
rosa_samantha Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana Rw0G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 620, 783
AasI GACNNNNNNGTC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 857
AciI CCGC 3 cut(s) 672, 681, 690
AclWI GGATC 3 cut(s) 368, 381, 912
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 2 cut(s) 325, 838
AcuI CTGAAG 2 cut(s) 87, 224
AfaI GTAC 2 cut(s) 463, 646
AfiI CCNNNNNNNGG 1 cut(s) 496
AgsI TTSAA 2 cut(s) 662, 778
AhlI ACTAGT 2 cut(s) 797, 862
AjnI CCWGG 2 cut(s) 116, 298
AluBI AGCT 9 cut(s) 82, 123, 140, 404, 438, 453, 610, 765, 825
AluI AGCT 9 cut(s) 82, 123, 140, 404, 438, 453, 610, 765, 825
Alw21I GWGCWC 2 cut(s) 125, 612
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 3 cut(s) 368, 381, 912
AoxI GGCC 4 cut(s) 16, 106, 194, 893
ApeKI GCWGC 4 cut(s) 30, 404, 435, 762
ApoI RAATTY 2 cut(s) 325, 838
AspS9I GGNCC 2 cut(s) 16, 504
AvaII GGWCC 1 cut(s) 504
BalI TGGCCA 1 cut(s) 108
BamHI GGATCC 1 cut(s) 373
BanII GRGCYC 3 cut(s) 125, 280, 612
Bbv12I GWGCWC 2 cut(s) 125, 612
BbvI GCAGC 4 cut(s) 42, 391, 447, 774
BccI CCATC 3 cut(s) 610, 691, 894
BceAI ACGGC 1 cut(s) 775
BciT130I CCWGG 2 cut(s) 118, 300
BcoDI GTCTC 1 cut(s) 66
BcuI ACTAGT 2 cut(s) 797, 862
BfaI CTAG 4 cut(s) 423, 798, 810, 863
BfuAI ACCTGC 1 cut(s) 159
BglII AGATCT 1 cut(s) 199
BisI GCNGC 4 cut(s) 31, 405, 436, 763
BlsI GCNGC 4 cut(s) 32, 406, 437, 764
Bme1390I CCNGG 2 cut(s) 118, 300
Bme18I GGWCC 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 16, 504
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 2 cut(s) 118, 300
BmsI GCATC 2 cut(s) 351, 796
BoxI GACNNNNGTC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 2 cut(s) 211, 348
BsaBI GATNNNNATC 1 cut(s) 885
BsaI GGTCTC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 652
Bse3DI GCAATG 1 cut(s) 440
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 2 cut(s) 118, 300
BseGI GGATG 2 cut(s) 396, 811
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 3 cut(s) 213, 293, 881
BseNI ACTGG 1 cut(s) 652
BseXI GCAGC 4 cut(s) 42, 391, 447, 774
BseYI CCCAGC 1 cut(s) 400
BsgI GTGCAG 1 cut(s) 587
BshFI GGCC 4 cut(s) 18, 108, 196, 895
BsiHKAI GWGCWC 2 cut(s) 125, 612
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 1 cut(s) 66
BsnI GGCC 4 cut(s) 18, 108, 196, 895
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 125, 280, 612
Bsp143I GATC 4 cut(s) 199, 373, 508, 904
BspACI CCGC 3 cut(s) 672, 681, 690
BspANI GGCC 4 cut(s) 18, 108, 196, 895
BspCNI CTCAG 3 cut(s) 214, 292, 882
BspLI GGNNCC 1 cut(s) 375
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 3 cut(s) 368, 381, 912
BspTNI GGTCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 440
BsrI ACTGG 1 cut(s) 652
BssMI GATC 4 cut(s) 199, 373, 508, 904
Bst2UI CCWGG 2 cut(s) 118, 300
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 3 cut(s) 155, 200, 225
BstDEI CTNAG 3 cut(s) 222, 279, 890
BstF5I GGATG 2 cut(s) 396, 811
BstKTI GATC 4 cut(s) 202, 376, 511, 907
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 4 cut(s) 199, 373, 508, 904
BstMWI GCNNNNNNNGC 4 cut(s) 284, 432, 680, 689
BstNI CCWGG 2 cut(s) 118, 300
BstNSI RCATGY 1 cut(s) 918
BstPAI GACNNNNGTC 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 116, 298
BstV1I GCAGC 4 cut(s) 42, 391, 447, 774
BstX2I RGATCY 2 cut(s) 199, 373
BstYI RGATCY 2 cut(s) 199, 373
BsuRI GGCC 4 cut(s) 18, 108, 196, 895
BtsCI GGATG 2 cut(s) 396, 811
BveI ACCTGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 16, 504
Csp6I GTAC 2 cut(s) 462, 645
CviAII CATG 6 cut(s) 110, 339, 428, 446, 639, 915
CviQI GTAC 2 cut(s) 462, 645
DdeI CTNAG 3 cut(s) 222, 279, 890
DpnI GATC 4 cut(s) 201, 375, 510, 906
DpnII GATC 4 cut(s) 199, 373, 508, 904
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 106
Eam1104I CTCTTC 3 cut(s) 155, 200, 225
EarI CTCTTC 3 cut(s) 155, 200, 225
Ecl136II GAGCTC 2 cut(s) 123, 610
Eco24I GRGCYC 3 cut(s) 125, 280, 612
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 504
Eco53kI GAGCTC 2 cut(s) 123, 610
Eco57I CTGAAG 2 cut(s) 87, 224
EcoICRI GAGCTC 2 cut(s) 123, 610
EcoRII CCWGG 2 cut(s) 116, 298
EcoT22I ATGCAT 1 cut(s) 344
EcoT38I GRGCYC 3 cut(s) 125, 280, 612
FaeI CATG 6 cut(s) 113, 342, 431, 449, 642, 918
FatI CATG 6 cut(s) 109, 338, 427, 445, 638, 914
FauI CCCGC 2 cut(s) 688, 697
FblI GTMKAC 1 cut(s) 857
Fnu4HI GCNGC 4 cut(s) 31, 405, 436, 763
FokI GGATG 2 cut(s) 383, 818
FriOI GRGCYC 3 cut(s) 125, 280, 612
Fsp4HI GCNGC 4 cut(s) 31, 405, 436, 763
FspBI CTAG 4 cut(s) 423, 798, 810, 863
GluI GCNGC 4 cut(s) 31, 405, 436, 763
GsaI CCCAGC 1 cut(s) 404
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 4 cut(s) 18, 108, 196, 895
Hin1II CATG 6 cut(s) 113, 342, 431, 449, 642, 918
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 5 cut(s) 88, 237, 413, 662, 854
Hpy166II GTNNAC 1 cut(s) 858
Hpy188I TCNGA 6 cut(s) 204, 223, 282, 412, 607, 891
Hpy188III TCNNGA 6 cut(s) 65, 322, 331, 346, 371, 820
Hpy8I GTNNAC 1 cut(s) 858
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 8 cut(s) 30, 168, 342, 445, 568, 633, 748, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 432, 680, 689
HpyF3I CTNAG 3 cut(s) 222, 279, 890
Hsp92II CATG 6 cut(s) 113, 342, 431, 449, 642, 918
Kzo9I GATC 4 cut(s) 199, 373, 508, 904
LmnI GCTCC 3 cut(s) 120, 607, 822
Lsp1109I GCAGC 4 cut(s) 42, 391, 447, 774
LweI GCATC 2 cut(s) 351, 796
MaeI CTAG 4 cut(s) 423, 798, 810, 863
MaeIII GTNAC 1 cut(s) 827
MalI GATC 4 cut(s) 201, 375, 510, 906
MboI GATC 4 cut(s) 199, 373, 508, 904
MboII GAAGA 7 cut(s) 80, 83, 172, 217, 242, 315, 361
MflI RGATCY 2 cut(s) 199, 373
MhlI GDGCHC 3 cut(s) 125, 280, 612
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 5 cut(s) 325, 628, 778, 838, 925
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 863
Mox20I TGGCCA 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 344
MscI TGGCCA 1 cut(s) 108
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 404, 765
MspR9I CCNGG 2 cut(s) 118, 300
MvaI CCWGG 2 cut(s) 118, 300
MwoI GCNNNNNNNGC 4 cut(s) 284, 432, 680, 689
NdeII GATC 4 cut(s) 199, 373, 508, 904
NlaIII CATG 6 cut(s) 113, 342, 431, 449, 642, 918
NlaIV GGNNCC 1 cut(s) 375
NsiI ATGCAT 1 cut(s) 344
NspI RCATGY 1 cut(s) 918
PfeI GAWTC 4 cut(s) 88, 237, 413, 662
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 4 cut(s) 32, 406, 437, 764
PleI GAGTC 1 cut(s) 862
PpsI GAGTC 1 cut(s) 862
PshAI GACNNNNGTC 1 cut(s) 58
PsiI TTATAA 2 cut(s) 620, 783
Psp124BI GAGCTC 2 cut(s) 125, 612
Psp6I CCWGG 2 cut(s) 116, 298
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 2 cut(s) 116, 298
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 2 cut(s) 16, 504
PsuI RGATCY 2 cut(s) 199, 373
PvuII CAGCTG 2 cut(s) 404, 765
RsaI GTAC 2 cut(s) 463, 646
RsaNI GTAC 2 cut(s) 462, 645
SacI GAGCTC 2 cut(s) 125, 612
SatI GCNGC 4 cut(s) 31, 405, 436, 763
Sau3AI GATC 4 cut(s) 199, 373, 508, 904
Sau96I GGNCC 2 cut(s) 16, 504
SchI GAGTC 1 cut(s) 863
ScrFI CCNGG 2 cut(s) 118, 300
SduI GDGCHC 3 cut(s) 125, 280, 612
SfaNI GCATC 2 cut(s) 351, 796
SinI GGWCC 1 cut(s) 504
SmlI CTYRAG 2 cut(s) 190, 363
SmoI CTYRAG 2 cut(s) 190, 363
SpeI ACTAGT 2 cut(s) 797, 862
Sse9I AATT 5 cut(s) 325, 628, 778, 838, 925
SsiI CCGC 3 cut(s) 672, 681, 690
SspMI CTAG 4 cut(s) 423, 798, 810, 863
SstI GAGCTC 2 cut(s) 125, 612
StyD4I CCNGG 2 cut(s) 116, 298
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 3 cut(s) 5, 612, 624
TaqII GACCGA 1 cut(s) 521
TasI AATT 5 cut(s) 325, 628, 778, 838, 925
TfiI GAWTC 4 cut(s) 88, 237, 413, 662
TseI GCWGC 4 cut(s) 30, 404, 435, 762
TspDTI ATGAA 5 cut(s) 101, 204, 242, 728, 804
VpaK11BI GGWCC 1 cut(s) 504
XapI RAATTY 2 cut(s) 325, 838
XceI RCATGY 1 cut(s) 918
XmiI GTMKAC 1 cut(s) 857
XspI CTAG 4 cut(s) 423, 798, 810, 863
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.