Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013950

Physical Location & Seq

Genomic Coordinates Forward (+)

15951953 .. 15952579

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG156700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATCAAGAAGAAACTCATCTCTCAAGGTCTGGATCCCAACACTCACAATCTTATCATCCCAGCTGCTTCTGATTCCAAATCTAGCCATGATAGCAGCTCATTGCATGGAAGCTCATCAAGTACCATACCAACCTATTTATATCAAAGCCCTAATATGGTTTGGACCGATCATTTCCAAGAGCAATATCCAAGAGGAAGCCAACCCTCAATGGAAAAATCTAAAGTGCAGACTATCTCATCTTTTTCTCATCACTCCTATCCATCGGAGCTCGATATTATAATCGAAAATTGCAAAACATGGGGTACTGGTAGTAGCATTGAATCCACCACCGCAGAACCCGCAGAGATGGAATATATGTCAATGAAAGCAGAACAGAAAGAGGAAAGTTGTGAAGTGCAAACTGAAAACGGCAGCTGTTCTGTGTTGAATTATAATGGTCAGCAAACTAGTATGGATGCTAGTTCATTCGGGAGCTGTAACTTGTCAAATTTTGACTTTGTGGAGTCTACACTAGTGCCTTGTGAAATGGATTACCATCTGAGGCCAATAATGGATCAACTTGCATGTTATCGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

208

Amino Acids

23.27

Weight (kDa)

4.89

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57560 AT1G57560
fragaria_vesca	FvH4_3g13230
malus_domestica	MD05G1243900.v1.1 MD10G1225800.v1.1
prunus_persica	Prupe.4G119700_v2.0.a1
pyrus_communis	pycom10g18970
rosa_chinensis	RchiOBHm_Chr5g0021591
rosa_laevigata	RLG00000032616
rosa_multiflora	Rmu_sc0016972.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057060
rosa_rugosa	Rorug05G0067500
rosa_samantha	Rh5AG156900 Rh5BG156400 Rh5CG170700 Rh5DG156700
rosa_wichuraiana	Rw0G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	326, 480
AasI	GACNNNNNNGTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	554
AciI	CCGC	2 cut(s)	378, 387
AclWI	GGATC	3 cut(s)	74, 87, 609
AcsI	RAATTY	2 cut(s)	31, 535
AfaI	GTAC	2 cut(s)	169, 352
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	368, 475
AhlI	ACTAGT	2 cut(s)	494, 559
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	6 cut(s)	110, 144, 159, 316, 462, 522
AluI	AGCT	6 cut(s)	110, 144, 159, 316, 462, 522
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	3 cut(s)	74, 87, 609
AoxI	GGCC	1 cut(s)	590
ApeKI	GCWGC	3 cut(s)	110, 141, 459
ApoI	RAATTY	2 cut(s)	31, 535
AspS9I	GGNCC	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	97, 153, 471
BccI	CCATC	3 cut(s)	316, 388, 591
BceAI	ACGGC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	6
BcuI	ACTAGT	2 cut(s)	494, 559
BfaI	CTAG	4 cut(s)	129, 495, 507, 560
BisI	GCNGC	3 cut(s)	111, 142, 460
BlsI	GCNGC	3 cut(s)	112, 143, 461
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	2 cut(s)	57, 493
BpuEI	CTTGAG	1 cut(s)	54
BsaBI	GATNNNNATC	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	146
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	102, 508
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	97, 153, 471
BseYI	CCCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	202
BsnI	GGCC	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	79, 214, 601
BspACI	CCGC	2 cut(s)	378, 387
BspANI	GGCC	1 cut(s)	592
BspCNI	CTCAG	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	3 cut(s)	74, 87, 609
BsrDI	GCAATG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	358
BssMI	GATC	3 cut(s)	79, 214, 601
Bst2UI	CCWGG	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	102, 508
BstKTI	GATC	3 cut(s)	82, 217, 604
BstMBI	GATC	3 cut(s)	79, 214, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 386
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	4
BstV1I	GCAGC	3 cut(s)	97, 153, 471
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	102, 508
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	168, 351
CviAII	CATG	5 cut(s)	45, 134, 152, 345, 612
CviQI	GTAC	2 cut(s)	168, 351
DdeI	CTNAG	1 cut(s)	587
DpnI	GATC	3 cut(s)	81, 216, 603
DpnII	GATC	3 cut(s)	79, 214, 601
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	4
EcoT22I	ATGCAT	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	5 cut(s)	48, 137, 155, 348, 615
FatI	CATG	5 cut(s)	44, 133, 151, 344, 611
FauI	CCCGC	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	3 cut(s)	111, 142, 460
FokI	GGATG	2 cut(s)	89, 515
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	3 cut(s)	111, 142, 460
FspBI	CTAG	4 cut(s)	129, 495, 507, 560
GluI	GCNGC	3 cut(s)	111, 142, 460
GsaI	CCCAGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	592
Hin1II	CATG	5 cut(s)	48, 137, 155, 348, 615
HinfI	GANTC	3 cut(s)	119, 368, 551
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	3 cut(s)	118, 313, 588
Hpy188III	TCNNGA	5 cut(s)	28, 37, 52, 77, 517
Hpy8I	GTNNAC	1 cut(s)	555
HpyCH4V	TGCA	6 cut(s)	48, 151, 274, 339, 445, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 386
HpyF3I	CTNAG	1 cut(s)	587
Hsp92II	CATG	5 cut(s)	48, 137, 155, 348, 615
Kzo9I	GATC	3 cut(s)	79, 214, 601
LmnI	GCTCC	2 cut(s)	313, 519
LpnPI	CCDG	5 cut(s)	18, 22, 62, 120, 339
Lsp1109I	GCAGC	3 cut(s)	97, 153, 471
LweI	GCATC	2 cut(s)	57, 493
MaeI	CTAG	4 cut(s)	129, 495, 507, 560
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	3 cut(s)	81, 216, 603
MboI	GATC	3 cut(s)	79, 214, 601
MboII	GAAGA	2 cut(s)	21, 67
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	5 cut(s)	31, 334, 475, 535, 622
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	5 cut(s)	16, 233, 262, 421, 582
Mph1103I	ATGCAT	1 cut(s)	50
MspA1I	CMGCKG	2 cut(s)	110, 462
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	138, 386
NdeII	GATC	3 cut(s)	79, 214, 601
NlaIII	CATG	5 cut(s)	48, 137, 155, 348, 615
NlaIV	GGNNCC	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	1 cut(s)	615
PfeI	GAWTC	2 cut(s)	119, 368
PkrI	GCNGC	3 cut(s)	112, 143, 461
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PsiI	TTATAA	2 cut(s)	326, 480
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	79
PvuII	CAGCTG	2 cut(s)	110, 462
RsaI	GTAC	2 cut(s)	169, 352
RsaNI	GTAC	2 cut(s)	168, 351
SacI	GAGCTC	1 cut(s)	318
SatI	GCNGC	3 cut(s)	111, 142, 460
Sau3AI	GATC	3 cut(s)	79, 214, 601
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	9 cut(s)	27, 76, 112, 146, 161, 182, 318, 464, 524
SfaNI	GCATC	2 cut(s)	57, 493
SinI	GGWCC	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
SpeI	ACTAGT	2 cut(s)	494, 559
Sse9I	AATT	5 cut(s)	31, 334, 475, 535, 622
SsiI	CCGC	2 cut(s)	378, 387
SspMI	CTAG	4 cut(s)	129, 495, 507, 560
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	4
TaqI	TCGA	2 cut(s)	318, 330
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	5 cut(s)	31, 334, 475, 535, 622
TfiI	GAWTC	2 cut(s)	119, 368
TseI	GCWGC	3 cut(s)	110, 141, 459
TspDTI	ATGAA	2 cut(s)	425, 501
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	2 cut(s)	31, 535
XceI	RCATGY	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	554
XspI	CTAG	4 cut(s)	129, 495, 507, 560
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.