AT1G57680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010894
Physical Location & Seq
Reverse (-)
21362359 .. 21364749
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G57680.3

Sequence Viewer

Length: 1089 bp
ATGCCCCTGACAAAATTAGTTCCCGATGCATTCGGCGTTGTGACGATATGTCTAGTCGCTCTGCTAGTTCTTTTGGGTCTCCTTTGCATCGCTTACTCGTTCTATTTCCAGTCTCACGTTCGTAAGCAAGGCTATATTCAACTTGGTTACTTCAGTGGTCCCTGGATTATCCGAATCACTTTCATTCTCTTTGCTATCTGGTGGGCTGTTGGTGAGATTTTTCGATTGAGTTTGTTGAGGCGTCACAGAAGGTTGTTGAGTGGGTTGGATCTGAGATGGCAAGAAAACGTTTGCAAGTGGTACATCGTTTCCAATCTAGGATTTGCGGAGCCTTGTCTCTTTCTGACTCTCATGTTTCTTCTGCGTGCTCCCTTGAAGATGGAATCAGGGGCTTTGAGCGGAAAATGGAACAGGGACACAGCAGGTTATATTATTCTTTATTGTCTCCCGATGCTTGCTCTTCAACTTGCGGTTGTGTTGTCCGAGTCACGCCTAAATGGTGGTAGTGGCTCTTATGTAAAGCTGCCACACGACTTCACAAGAACGTATTCCCGAGTTATTATTGATCACGACGAGGTGGCCTTATGCACATATCCTCTACTGAGTACCATCCTTCTTGGTGTGTTTGCAGCCGTCCTAACAGCTTACTTGTTCTGGCTTGGAAGGCAGATACTGAAACTTGTCATTAACAAGCGTTTACAGAAGAGAGTATACACTTTGATATTCTCGGTCTCGAGTTTCCTTCCATTAAGGATTGTTATGCTCTGTTTGTCGGTTCTCACAGCAGCAGACAAGATTATATTCGAAGCCCTTTCTTTCTTGGCCTTCCTCTCCCTCTTCTGCTTTTGCGTGGTATCCATCTGCTTGCTTGTCTACTTCCCGGTTTCAGATTCCATGGCCCTGAGAGGTCTAAGAGACACAGATGATGAGGATACGGCTGTGACCGAAGAACGCAGTGGTGCTCTGTTACTTGCACCAAACTCTTCACAAACTGATGAGGGATTGAGCTTAAGAGGTCGGAGAGACTCGGGATCGTCTACACAGGAGAGGTATGTGGAACTCAGCCTATTTCTGGAAGCTGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

362

Amino Acids

40.88

Weight (kDa)

8.64

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57680 AT1G57680 AT1G57680
fragaria_vesca FvH4_5g28140 FvH4_5g28140
malus_domestica MD08G1245000.v1.1 MD15G1440100.v1.1
prunus_persica Prupe.1G582400_v2.0.a1
pyrus_communis pycom08g21250 pycom15g38800
rosa_chinensis RchiOBHm_Chr7g0220291
rosa_laevigata RLG00000002242
rosa_multiflora Rmu_sc0001136.1_g000030
rosa_roxburghii Rroxscaffold_3G00239640
rosa_rugosa Rorug07G0191900.1
rosa_samantha Rh7AG333900 Rh7BG323200 Rh7CG351600 Rh7DG330200
rosa_wichuraiana Rw7G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 413
AccBSI CCGCTC 1 cut(s) 399
AccI GTMKAC 3 cut(s) 711, 873, 1037
AciI CCGC 3 cut(s) 326, 399, 470
AclI AACGTT 1 cut(s) 288
AclWI GGATC 2 cut(s) 276, 1039
AcuI CTGAAG 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 241
AfaI GTAC 2 cut(s) 302, 607
AfiI CCNNNNNNNGG 1 cut(s) 1072
AflII CTTAAG 1 cut(s) 1009
AgsI TTSAA 3 cut(s) 140, 376, 464
AhdI GACNNNNNGTC 1 cut(s) 48
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 4 cut(s) 523, 644, 1008, 1079
AluI AGCT 4 cut(s) 523, 644, 1008, 1079
Alw21I GWGCWC 2 cut(s) 370, 964
Alw26I GTCTC 7 cut(s) 83, 117, 341, 449, 736, 909, 1017
AlwI GGATC 2 cut(s) 276, 1039
AlwNI CAGNNNCTG 1 cut(s) 673
Ama87I CYCGRG 3 cut(s) 552, 733, 1027
AoxI GGCC 3 cut(s) 579, 822, 897
ApeKI GCWGC 3 cut(s) 523, 629, 785
Asp700I GAANNNNTTC 1 cut(s) 547
AspS9I GGNCC 2 cut(s) 158, 898
AsuC2I CCSGG 1 cut(s) 881
AsuHPI GGTGA 1 cut(s) 224
AsuII TTCGAA 1 cut(s) 804
AvaI CYCGRG 3 cut(s) 552, 733, 1027
AvaII GGWCC 1 cut(s) 158
BaeI ACNNNNGTAYC 2 cut(s) 924, 957
BarI GAAGNNNNNNTAC 2 cut(s) 695, 727
Bbv12I GWGCWC 2 cut(s) 370, 964
BbvI GCAGC 3 cut(s) 510, 641, 797
BccI CCATC 4 cut(s) 270, 373, 617, 866
BceAI ACGGC 2 cut(s) 617, 951
BciT130I CCWGG 1 cut(s) 163
BciVI GTATCC 2 cut(s) 865, 925
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 1 cut(s) 881
BcoDI GTCTC 7 cut(s) 83, 117, 341, 449, 736, 909, 1017
BfaI CTAG 3 cut(s) 53, 65, 317
BfrI CTTAAG 1 cut(s) 1009
BfuAI ACCTGC 1 cut(s) 413
BfuI GTATCC 2 cut(s) 865, 925
BisI GCNGC 3 cut(s) 524, 630, 786
BlsI GCNGC 3 cut(s) 525, 631, 787
Bme1390I CCNGG 2 cut(s) 163, 881
Bme18I GGWCC 1 cut(s) 158
BmeRI GACNNNNNGTC 1 cut(s) 48
BmeT110I CYCGRG 3 cut(s) 552, 733, 1027
BmgT120I GGNCC 2 cut(s) 158, 898
BmiI GGNNCC 2 cut(s) 160, 330
BmrFI CCNGG 2 cut(s) 163, 881
BmsI GCATC 3 cut(s) 16, 96, 441
Bpu14I TTCGAA 1 cut(s) 804
BpuMI CCSGG 1 cut(s) 881
BsaHI GRCGYC 1 cut(s) 241
BsaI GGTCTC 2 cut(s) 83, 736
BsaJI CCNNGG 2 cut(s) 161, 894
Bsc4I CCNNNNNNNGG 1 cut(s) 1072
Bse1I ACTGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 161, 894
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 1 cut(s) 1072
BseMII CTCAG 5 cut(s) 263, 593, 893, 1071, 1075
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 3 cut(s) 510, 641, 797
BshFI GGCC 3 cut(s) 581, 824, 899
BsiHKAI GWGCWC 2 cut(s) 370, 964
BsiHKCI CYCGRG 3 cut(s) 552, 733, 1027
BsiSI CCGG 1 cut(s) 881
BslFI GGGAC 2 cut(s) 144, 428
BslI CCNNNNNNNGG 1 cut(s) 1072
BsmAI GTCTC 7 cut(s) 83, 117, 341, 449, 736, 909, 1017
BsmFI GGGAC 2 cut(s) 144, 428
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 3 cut(s) 581, 824, 899
Bso31I GGTCTC 2 cut(s) 83, 736
BsoBI CYCGRG 3 cut(s) 552, 733, 1027
Bsp119I TTCGAA 1 cut(s) 804
Bsp1286I GDGCHC 2 cut(s) 370, 964
Bsp143I GATC 3 cut(s) 268, 565, 1031
Bsp19I CCATGG 1 cut(s) 894
BspACI CCGC 3 cut(s) 326, 399, 470
BspANI GGCC 3 cut(s) 581, 824, 899
BspCNI CTCAG 5 cut(s) 264, 594, 894, 1072, 1074
BspLI GGNNCC 2 cut(s) 160, 330
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 2 cut(s) 276, 1039
BspQI GCTCTTC 1 cut(s) 465
BspT104I TTCGAA 1 cut(s) 804
BspTI CTTAAG 1 cut(s) 1009
BspTNI GGTCTC 2 cut(s) 83, 736
BsrBI CCGCTC 1 cut(s) 399
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 161, 894
BssMI GATC 3 cut(s) 268, 565, 1031
BssNAI GTATAC 1 cut(s) 712
BssNI GRCGYC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 894
Bst1107I GTATAC 1 cut(s) 712
Bst2UI CCWGG 1 cut(s) 163
Bst6I CTCTTC 4 cut(s) 465, 698, 842, 988
BstACI GRCGYC 1 cut(s) 241
BstAFI CTTAAG 1 cut(s) 1009
BstBI TTCGAA 1 cut(s) 804
BstC8I GCNNGC 3 cut(s) 366, 456, 866
BstDEI CTNAG 6 cut(s) 272, 602, 902, 911, 1061, 1080
BstDSI CCRYGG 1 cut(s) 894
BstF5I GGATG 1 cut(s) 609
BstKTI GATC 3 cut(s) 271, 568, 1034
BstMAI GTCTC 7 cut(s) 83, 117, 341, 449, 736, 909, 1017
BstMBI GATC 3 cut(s) 268, 565, 1031
BstMWI GCNNNNNNNGC 1 cut(s) 664
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 161, 879
BstV1I GCAGC 3 cut(s) 510, 641, 797
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BstZ17I GTATAC 1 cut(s) 712
BsuI GTATCC 2 cut(s) 865, 925
BsuRI GGCC 3 cut(s) 581, 824, 899
BtgI CCRYGG 1 cut(s) 894
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 1 cut(s) 609
BtsI GCAGTG 1 cut(s) 961
BtsIMutI CAGTG 2 cut(s) 160, 961
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 3 cut(s) 366, 456, 866
CaiI CAGNNNCTG 1 cut(s) 673
Cfr13I GGNCC 2 cut(s) 158, 898
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 301, 606
CviAII CATG 2 cut(s) 352, 895
CviQI GTAC 2 cut(s) 301, 606
DdeI CTNAG 6 cut(s) 272, 602, 902, 911, 1061, 1080
DpnI GATC 3 cut(s) 270, 567, 1033
DpnII GATC 3 cut(s) 268, 565, 1031
DriI GACNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 4 cut(s) 465, 698, 842, 988
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 4 cut(s) 465, 698, 842, 988
Eco130I CCWWGG 1 cut(s) 894
Eco31I GGTCTC 2 cut(s) 83, 736
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 136
Eco88I CYCGRG 3 cut(s) 552, 733, 1027
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 894
EcoT22I ATGCAT 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 894
FaeI CATG 2 cut(s) 355, 898
FaqI GGGAC 2 cut(s) 144, 428
FatI CATG 2 cut(s) 351, 894
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 3 cut(s) 711, 873, 1037
Fnu4HI GCNGC 3 cut(s) 524, 630, 786
FokI GGATG 1 cut(s) 596
Fsp4HI GCNGC 3 cut(s) 524, 630, 786
FspBI CTAG 3 cut(s) 53, 65, 317
GluI GCNGC 3 cut(s) 524, 630, 786
HaeIII GGCC 3 cut(s) 581, 824, 899
HapII CCGG 1 cut(s) 881
HgaI GACGC 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 241
Hin1II CATG 2 cut(s) 355, 898
HinfI GANTC 6 cut(s) 174, 346, 383, 485, 890, 1025
HpaII CCGG 1 cut(s) 881
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 4 cut(s) 698, 712, 874, 1038
Hpy188I TCNGA 6 cut(s) 173, 273, 345, 484, 889, 1020
Hpy188III TCNNGA 7 cut(s) 23, 448, 552, 569, 733, 1029, 1073
Hpy8I GTNNAC 4 cut(s) 698, 712, 874, 1038
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 5 cut(s) 243, 623, 657, 752, 835
HpyCH4IV ACGT 3 cut(s) 117, 288, 545
HpyCH4V TGCA 6 cut(s) 29, 87, 294, 588, 629, 974
HpyF10VI GCNNNNNNNGC 1 cut(s) 664
HpyF3I CTNAG 6 cut(s) 272, 602, 902, 911, 1061, 1080
HpySE526I ACGT 3 cut(s) 117, 288, 545
Hsp92I GRCGYC 1 cut(s) 241
Hsp92II CATG 2 cut(s) 355, 898
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 3 cut(s) 268, 565, 1031
LguI GCTCTTC 1 cut(s) 465
LmnI GCTCC 2 cut(s) 328, 373
Lsp1109I GCAGC 3 cut(s) 510, 641, 797
LweI GCATC 3 cut(s) 16, 96, 441
MaeI CTAG 3 cut(s) 53, 65, 317
MaeII ACGT 3 cut(s) 117, 288, 545
MaeIII GTNAC 6 cut(s) 40, 146, 242, 486, 940, 966
MalI GATC 3 cut(s) 270, 567, 1033
MbiI CCGCTC 1 cut(s) 399
MboI GATC 3 cut(s) 268, 565, 1031
MboII GAAGA 7 cut(s) 350, 388, 452, 715, 829, 959, 975
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 370, 964
MluCI AATT 1 cut(s) 14
MlyI GAGTC 3 cut(s) 340, 494, 1019
MmeI TCCRAC 2 cut(s) 246, 998
Mph1103I ATGCAT 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 547
MseI TTAA 3 cut(s) 687, 749, 1010
MspCI CTTAAG 1 cut(s) 1009
MspI CCGG 1 cut(s) 881
MspR9I CCNGG 2 cut(s) 163, 881
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 664
NciI CCSGG 1 cut(s) 881
NcoI CCATGG 1 cut(s) 894
NdeII GATC 3 cut(s) 268, 565, 1031
NlaIII CATG 2 cut(s) 355, 898
NlaIV GGNNCC 2 cut(s) 160, 330
NmuCI GTSAC 4 cut(s) 40, 242, 486, 940
NsiI ATGCAT 1 cut(s) 31
NspV TTCGAA 1 cut(s) 804
PaeR7I CTCGAG 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 465
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 547
PfeI GAWTC 3 cut(s) 174, 383, 890
PkrI GCNGC 3 cut(s) 525, 631, 787
PleI GAGTC 3 cut(s) 340, 493, 1019
PpsI GAGTC 3 cut(s) 340, 493, 1019
Psp1406I AACGTT 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 160, 330
PspPI GGNCC 2 cut(s) 158, 898
PstNI CAGNNNCTG 1 cut(s) 673
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 2 cut(s) 302, 607
RsaNI GTAC 2 cut(s) 301, 606
SapI GCTCTTC 1 cut(s) 465
SaqAI TTAA 3 cut(s) 687, 749, 1010
SatI GCNGC 3 cut(s) 524, 630, 786
Sau3AI GATC 3 cut(s) 268, 565, 1031
Sau96I GGNCC 2 cut(s) 158, 898
SchI GAGTC 3 cut(s) 340, 494, 1019
ScrFI CCNGG 2 cut(s) 163, 881
SduI GDGCHC 2 cut(s) 370, 964
SfaNI GCATC 3 cut(s) 16, 96, 441
Sfr274I CTCGAG 1 cut(s) 733
SfuI TTCGAA 1 cut(s) 804
SinI GGWCC 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 733
SmlI CTYRAG 2 cut(s) 733, 1009
SmoI CTYRAG 2 cut(s) 733, 1009
Sse9I AATT 1 cut(s) 14
SsiI CCGC 3 cut(s) 326, 399, 470
SspMI CTAG 3 cut(s) 53, 65, 317
StyD4I CCNGG 2 cut(s) 161, 879
StyI CCWWGG 1 cut(s) 894
TaiI ACGT 3 cut(s) 120, 291, 548
TaqI TCGA 3 cut(s) 223, 734, 804
TaqII GACCGA 2 cut(s) 718, 959
TasI AATT 1 cut(s) 14
TfiI GAWTC 3 cut(s) 174, 383, 890
Tru1I TTAA 3 cut(s) 687, 749, 1010
Tru9I TTAA 3 cut(s) 687, 749, 1010
TscAI CASTG 2 cut(s) 160, 961
TseFI GTSAC 4 cut(s) 40, 242, 486, 940
TseI GCWGC 3 cut(s) 523, 629, 785
Tsp45I GTSAC 4 cut(s) 40, 242, 486, 940
TspDTI ATGAA 1 cut(s) 172
TspRI CASTG 2 cut(s) 160, 961
Vha464I CTTAAG 1 cut(s) 1009
VpaK11BI GGWCC 1 cut(s) 158
XhoI CTCGAG 1 cut(s) 733
XmiI GTMKAC 3 cut(s) 711, 873, 1037
XmnI GAANNNNTTC 1 cut(s) 547
XspI CTAG 3 cut(s) 53, 65, 317
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.