Rroxscaffold_3G00239640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010894
Physical Location & Seq
Forward (+)
30108679 .. 30111373
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239640.1

Sequence Viewer

Length: 1191 bp
ATGCCCCAGACGAGAATTGCTGCCGATACACTCGGTGTGTTGACCGTATGTCTAGTTGCTCTCTTGATCCTTCTGGGTGTCCTCTGCATCACCTACTTGTTTTACTTTCGCTGTCGTATTCGTAGTCAGGGTTTTGTTCAACTCAGTTATTTCAGTGGCCCTTGGATAATCCGAATAACTTTCATTTTGTTTGCAATCTGGTGGGGAATTGGTGAAATTATCCGGTTAAGTTTGTTGAGACGGGAAGGAAGACTGTTGAATACCCTTAACTTGAAATGGCAGGAGACTGTCTGCAAATGCTATATTGTCTCAAACCTGGGGTTTGCAGAACCTTGCCTATTCCTGACCCTTGTGTTCCTACTTCGTGCTCCTTTGCATACAATGGAGTCAGGTATTCTAAGCCGACAATGGAATGGGAAAACAGCTGGCTACATTCTTTTCTACTGCCTCCCAATGGTTCTTCTACAGCTCGTTGTCATAGTAATTGGACCCACTCTGAACAGTAATCATGAGTTGCCTCCCTACTTTACCATTACCAGTTCAATGAACAAGACTGATCAGATTGTCCTCTGCACTTACCCTTTACTGAGTACGTTACTTCTTGGGATTTTTGCCATCATTCTAACTGCCTACGTGTTTTGGCTTGGAAGGCAGATTTTAAAGATGGTCATCAATAAGGGTCTGCAGAAAAGAGTTTATACATTGATATTCTCAGTTTCAAGTTTCCTTCCATTGAGGGTTACTTTGCTTAGCTTCTCTGTTTTATCTAAACCAGAGCACTTTCAGTTTGAAGCTCTTGCTTTCTTGGCTTTTCTTGCCCTTTTATGTTGTGCGGGTGTGTGTATATGCATGCTTGTTTACTGCCCGGTTGCGGATTCTTTAGCGCTGGGGAGTTTACAGGACTTGGAGGGTAGGAGGAGACTTGATGATGGTCAAAATGACACCATTTCTCTTATTGCTAACCAGAGTCATATGGAAGAAAGTGCTGGATTTAGTCCCAGTAGAAGCTCTGATGTGTCAACCAAGCAGCGCGGATCAATTTCTTTCCGTGCTTTGGGAAAGGAGGATGGTTCTTCTAGGGGACCATTTGTGGAATTGAGCCTCTTCTCTCCTAGTGAAGATGCAACACCCCCAGAATCACCTCCGCTTCTTGGCTGGCCTATGCGTTCCTCTCCTTCACCTCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

44.24

Weight (kDa)

8.77

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57680 AT1G57680 AT1G57680
fragaria_vesca FvH4_5g28140 FvH4_5g28140
malus_domestica MD08G1245000.v1.1 MD15G1440100.v1.1
prunus_persica Prupe.1G582400_v2.0.a1
pyrus_communis pycom08g21250 pycom15g38800
rosa_chinensis RchiOBHm_Chr7g0220291
rosa_laevigata RLG00000002242
rosa_multiflora Rmu_sc0001136.1_g000030
rosa_roxburghii Rroxscaffold_3G00239640
rosa_rugosa Rorug07G0191900.1
rosa_samantha Rh7AG333900 Rh7BG323200 Rh7CG351600 Rh7DG330200
rosa_wichuraiana Rw7G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1032
AciI CCGC 4 cut(s) 833, 872, 1032, 1145
AclWI GGATC 2 cut(s) 61, 1042
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 1 cut(s) 592
AfeI AGCGCT 1 cut(s) 885
AfiI CCNNNNNNNGG 4 cut(s) 454, 871, 1054, 1151
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 6 cut(s) 140, 259, 274, 543, 720, 791
AhdI GACNNNNNGTC 1 cut(s) 48
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 5 cut(s) 425, 469, 753, 794, 1008
AluI AGCT 5 cut(s) 425, 469, 753, 794, 1008
Alw21I GWGCWC 2 cut(s) 370, 780
Alw26I GTCTC 4 cut(s) 232, 278, 313, 913
AlwI GGATC 2 cut(s) 61, 1042
Aor51HI AGCGCT 1 cut(s) 885
AoxI GGCC 2 cut(s) 157, 1157
ApeKI GCWGC 2 cut(s) 20, 1027
AspLEI GCGC 2 cut(s) 886, 1032
AspS9I GGNCC 3 cut(s) 158, 488, 1082
AsuC2I CCSGG 1 cut(s) 866
AsuHPI GGTGA 5 cut(s) 82, 224, 1131, 1170, 1175
AvaII GGWCC 2 cut(s) 488, 1082
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 370, 780
BbvI GCAGC 2 cut(s) 7, 1039
BccI CCATC 4 cut(s) 623, 658, 923, 1061
BciT130I CCWGG 1 cut(s) 317
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 1 cut(s) 866
BcoDI GTCTC 4 cut(s) 232, 278, 313, 913
BfaI CTAG 3 cut(s) 53, 1077, 1113
BfmI CTRYAG 2 cut(s) 464, 683
BfoI RGCGCY 1 cut(s) 887
BisI GCNGC 2 cut(s) 21, 1028
BlpI GCTNAGC 1 cut(s) 749
BlsI GCNGC 2 cut(s) 22, 1029
Bme1390I CCNGG 2 cut(s) 317, 866
Bme18I GGWCC 2 cut(s) 488, 1082
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgT120I GGNCC 3 cut(s) 158, 488, 1082
BmiI GGNNCC 2 cut(s) 490, 1083
BmrFI CCNGG 2 cut(s) 317, 866
BmrI ACTGGG 1 cut(s) 993
BmsI GCATC 2 cut(s) 96, 1111
BmuI ACTGGG 1 cut(s) 993
BpiI GAAGAC 1 cut(s) 256
Bpu1102I GCTNAGC 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 866
BsaAI YACGTR 1 cut(s) 634
BsaBI GATNNNNATC 1 cut(s) 668
BsaJI CCNNGG 2 cut(s) 161, 316
BsaWI WCCGGW 1 cut(s) 222
Bsc4I CCNNNNNNNGG 4 cut(s) 454, 871, 1054, 1151
Bse1I ACTGG 3 cut(s) 537, 999, 1186
Bse8I GATNNNNATC 1 cut(s) 668
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 161, 316
BseGI GGATG 1 cut(s) 1072
BseJI GATNNNNATC 1 cut(s) 668
BseLI CCNNNNNNNGG 4 cut(s) 454, 871, 1054, 1151
BseMII CTCAG 3 cut(s) 157, 578, 726
BseNI ACTGG 3 cut(s) 537, 999, 1186
BseRI GAGGAG 1 cut(s) 931
BseXI GCAGC 2 cut(s) 7, 1039
BseYI CCCAGC 1 cut(s) 886
BsgI GTGCAG 1 cut(s) 556
Bsh1236I CGCG 1 cut(s) 1032
BshFI GGCC 2 cut(s) 159, 1159
BsiHKAI GWGCWC 2 cut(s) 370, 780
BsiSI CCGG 2 cut(s) 223, 866
BslFI GGGAC 2 cut(s) 981, 1095
BslI CCNNNNNNNGG 4 cut(s) 454, 871, 1054, 1151
BsmAI GTCTC 4 cut(s) 232, 278, 313, 913
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 981, 1095
BsnI GGCC 2 cut(s) 159, 1159
Bsp1286I GDGCHC 2 cut(s) 370, 780
Bsp143I GATC 3 cut(s) 66, 556, 1034
Bsp1720I GCTNAGC 1 cut(s) 749
BspACI CCGC 4 cut(s) 833, 872, 1032, 1145
BspANI GGCC 2 cut(s) 159, 1159
BspCNI CTCAG 3 cut(s) 156, 579, 725
BspFNI CGCG 1 cut(s) 1032
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 490, 1083
BspMAI CTGCAG 1 cut(s) 687
BspPI GGATC 2 cut(s) 61, 1042
BsrI ACTGG 3 cut(s) 537, 999, 1186
BssECI CCNNGG 2 cut(s) 161, 316
BssMI GATC 3 cut(s) 66, 556, 1034
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 4 cut(s) 46, 255, 289, 503
Bst6I CTCTTC 1 cut(s) 1109
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 3 cut(s) 427, 851, 1157
BstDEI CTNAG 5 cut(s) 143, 398, 587, 712, 749
BstF5I GGATG 1 cut(s) 1072
BstFNI CGCG 1 cut(s) 1032
BstH2I RGCGCY 1 cut(s) 887
BstHHI GCGC 2 cut(s) 886, 1032
BstKTI GATC 3 cut(s) 69, 559, 1037
BstMAI GTCTC 4 cut(s) 232, 278, 313, 913
BstMBI GATC 3 cut(s) 66, 556, 1034
BstMWI GCNNNNNNNGC 3 cut(s) 649, 806, 815
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 2 cut(s) 315, 864
BstSFI CTRYAG 2 cut(s) 464, 683
BstUI CGCG 1 cut(s) 1032
BstV1I GCAGC 2 cut(s) 7, 1039
BstV2I GAAGAC 1 cut(s) 256
BsuRI GGCC 2 cut(s) 159, 1159
BtsCI GGATG 1 cut(s) 1072
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 3 cut(s) 427, 851, 1157
CciI TCATGA 1 cut(s) 508
CfoI GCGC 2 cut(s) 886, 1032
Cfr13I GGNCC 3 cut(s) 158, 488, 1082
Csp6I GTAC 1 cut(s) 591
CviAII CATG 2 cut(s) 509, 850
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 5 cut(s) 143, 398, 587, 712, 749
DpnI GATC 3 cut(s) 68, 558, 1036
DpnII GATC 3 cut(s) 66, 556, 1034
DraI TTTAAA 1 cut(s) 660
DraIII CACNNNGTG 1 cut(s) 35
DriI GACNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 1109
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 1109
Eco130I CCWWGG 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 488, 1082
Eco47III AGCGCT 1 cut(s) 885
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 851
ErhI CCWWGG 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 2 cut(s) 512, 853
FaqI GGGAC 2 cut(s) 981, 1095
FatI CATG 2 cut(s) 508, 849
FauI CCCGC 1 cut(s) 826
FauNDI CATATG 1 cut(s) 972
FbaI TGATCA 1 cut(s) 556
Fnu4HI GCNGC 2 cut(s) 21, 1028
FokI GGATG 1 cut(s) 1079
Fsp4HI GCNGC 2 cut(s) 21, 1028
FspBI CTAG 3 cut(s) 53, 1077, 1113
GlaI GCGC 2 cut(s) 885, 1031
GluI GCNGC 2 cut(s) 21, 1028
GsaI CCCAGC 1 cut(s) 890
HaeII RGCGCY 1 cut(s) 887
HaeIII GGCC 2 cut(s) 159, 1159
HapII CCGG 2 cut(s) 223, 866
HhaI GCGC 2 cut(s) 886, 1032
Hin1II CATG 2 cut(s) 512, 853
Hin6I GCGC 2 cut(s) 884, 1030
HinP1I GCGC 2 cut(s) 884, 1030
HincII GTYRAC 2 cut(s) 42, 1020
HindII GTYRAC 2 cut(s) 42, 1020
HinfI GANTC 4 cut(s) 386, 875, 967, 1136
HpaII CCGG 2 cut(s) 223, 866
HphI GGTGA 5 cut(s) 82, 224, 1131, 1170, 1175
Hpy166II GTNNAC 4 cut(s) 42, 859, 896, 1020
Hpy188I TCNGA 4 cut(s) 173, 498, 561, 1012
Hpy188III TCNNGA 3 cut(s) 64, 343, 509
Hpy8I GTNNAC 4 cut(s) 42, 859, 896, 1020
HpyAV CCTTC 5 cut(s) 80, 239, 642, 737, 1185
HpyCH4III ACNGT 4 cut(s) 46, 255, 289, 503
HpyCH4IV ACGT 2 cut(s) 593, 633
HpyCH4V TGCA 9 cut(s) 87, 194, 294, 326, 376, 573, 685, 849, 1124
HpyF10VI GCNNNNNNNGC 3 cut(s) 649, 806, 815
HpyF3I CTNAG 5 cut(s) 143, 398, 587, 712, 749
HpySE526I ACGT 2 cut(s) 593, 633
Hsp92II CATG 2 cut(s) 512, 853
HspAI GCGC 2 cut(s) 884, 1030
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 3 cut(s) 66, 556, 1034
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 2 cut(s) 7, 1039
LweI GCATC 2 cut(s) 96, 1111
MaeI CTAG 3 cut(s) 53, 1077, 1113
MaeII ACGT 2 cut(s) 593, 633
MaeIII GTNAC 2 cut(s) 594, 739
MalI GATC 3 cut(s) 68, 558, 1036
MboI GATC 3 cut(s) 66, 556, 1034
MboII GAAGA 6 cut(s) 261, 452, 989, 1065, 1096, 1130
MhlI GDGCHC 2 cut(s) 370, 780
MluCI AATT 6 cut(s) 15, 207, 216, 483, 1038, 1094
MlyI GAGTC 2 cut(s) 395, 976
Mph1103I ATGCAT 1 cut(s) 851
MseI TTAA 3 cut(s) 227, 267, 659
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 223, 866
MspR9I CCNGG 2 cut(s) 317, 866
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 1032
MwoI GCNNNNNNNGC 3 cut(s) 649, 806, 815
NciI CCSGG 1 cut(s) 866
NdeI CATATG 1 cut(s) 972
NdeII GATC 3 cut(s) 66, 556, 1034
NlaIII CATG 2 cut(s) 512, 853
NlaIV GGNNCC 2 cut(s) 490, 1083
NsiI ATGCAT 1 cut(s) 851
NspI RCATGY 1 cut(s) 853
PaeI GCATGC 1 cut(s) 853
PagI TCATGA 1 cut(s) 508
PfeI GAWTC 2 cut(s) 875, 1136
PkrI GCNGC 2 cut(s) 22, 1029
PleI GAGTC 2 cut(s) 394, 975
PpsI GAGTC 2 cut(s) 394, 975
Ppu21I YACGTR 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 886
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 490, 1083
PspPI GGNCC 3 cut(s) 158, 488, 1082
PstI CTGCAG 1 cut(s) 687
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
SaqAI TTAA 3 cut(s) 227, 267, 659
SatI GCNGC 2 cut(s) 21, 1028
Sau3AI GATC 3 cut(s) 66, 556, 1034
Sau96I GGNCC 3 cut(s) 158, 488, 1082
SchI GAGTC 2 cut(s) 395, 976
ScrFI CCNGG 2 cut(s) 317, 866
SduI GDGCHC 2 cut(s) 370, 780
SfaNI GCATC 2 cut(s) 96, 1111
SfcI CTRYAG 2 cut(s) 464, 683
SinI GGWCC 2 cut(s) 488, 1082
SphI GCATGC 1 cut(s) 853
Sse9I AATT 6 cut(s) 15, 207, 216, 483, 1038, 1094
SsiI CCGC 4 cut(s) 833, 872, 1032, 1145
SspMI CTAG 3 cut(s) 53, 1077, 1113
StyD4I CCNGG 2 cut(s) 315, 864
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 4 cut(s) 46, 255, 289, 503
TaiI ACGT 2 cut(s) 596, 636
TasI AATT 6 cut(s) 15, 207, 216, 483, 1038, 1094
TfiI GAWTC 2 cut(s) 875, 1136
Tru1I TTAA 3 cut(s) 227, 267, 659
Tru9I TTAA 3 cut(s) 227, 267, 659
TscAI CASTG 1 cut(s) 160
TseI GCWGC 2 cut(s) 20, 1027
TspDTI ATGAA 2 cut(s) 172, 560
TspGWI ACGGA 1 cut(s) 1037
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 488, 1082
XceI RCATGY 1 cut(s) 853
XspI CTAG 3 cut(s) 53, 1077, 1113
Zsp2I ATGCAT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.