pycom08g21250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0010894
Physical Location & Seq
Forward (+)
20791426 .. 20792367
942 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g21250.1

Sequence Viewer

Length: 942 bp
ATGCCCCTGACGAGAATTGCTGCCGATACACTCGGTGTGTTGACCATATGTCTAGTTGCTCTCTTGATCCTTCTTGGTGTCTTCTGCATTATTTACTTGTTTTACTTTCGCTCTCACATTCGTAATCAGGGTTTTATTCAGCTGAATTATTTCAGTGGCCCTTGGATTATCCGAATCACTTTCATCTTGTTTGCAATCTGGTGGGGTTTTGGTGAAGTTGCCCGTTTAAGTCTGTTGAGACGTGAGGGGAGAGTGTTGAACGCCCTTAACTTTAAATGGCAGGAGAATCTTTGCAAGTGTTACATTGTCTCAAACCTTGGGTTTGCGGAACCATGCCTATTCCTGACCCTTGTGTTCCTACTTCGTGCGCCTTTGCAGACAATGGAGTCAGGAATTCTAAGCCGAAAGTGGAATGGGAAAACAGCTGGTTACATTCTTTTCTTTTGCCTCCCATTGGTTGCTCTTCAGCTCTTCGTTATTTTAATTGGACCCGAACTCCACAAGAAAGACAGTTTACATAAATTGCCTTACTACTTCACAAGTACAGTGAACAAGACTGATCATGTTGCCCTCTGCACTTACCCTTTGCTGAGTACCATCCTGCTTGGGATTTTTGCCATCATTCTAACTGCCTACTTGTTTTGGCTTGGAAGGCGGATTTTAAAATTGGTCATCAACAAGGGTCTGCAGAAGAGAGTTTATACATTGATATTCTCGGTTTCAAGTTTCCTTCCGTTAAGAGTTACTTTGCTTGGTTTCTCTGTTTTATCTAAACCAGAGCACGTTCAGTTTGAAACTCTTGCTTTCTTGGCGTTTCTTGCACTTTTATGTTGTGCTGGGGTGTGTATATGCATGCTTGTTTACTGCCCAGTTGCGGATTCTTTAGCCCTGGGGAGTTTACAGGACTTGGAGAGTAGGAGAGTTAATGATCGATCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

35.56

Weight (kDa)

9.31

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57680 AT1G57680 AT1G57680
fragaria_vesca FvH4_5g28140 FvH4_5g28140
malus_domestica MD08G1245000.v1.1 MD15G1440100.v1.1
prunus_persica Prupe.1G582400_v2.0.a1
pyrus_communis pycom08g21250 pycom15g38800
rosa_chinensis RchiOBHm_Chr7g0220291
rosa_laevigata RLG00000002242
rosa_multiflora Rmu_sc0001136.1_g000030
rosa_roxburghii Rroxscaffold_3G00239640
rosa_rugosa Rorug07G0191900.1
rosa_samantha Rh7AG333900 Rh7BG323200 Rh7CG351600 Rh7DG330200
rosa_wichuraiana Rw7G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 385
AciI CCGC 3 cut(s) 326, 655, 875
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 2 cut(s) 544, 595
AfiI CCNNNNNNNGG 2 cut(s) 454, 874
AgsI TTSAA 3 cut(s) 259, 723, 794
AhdI GACNNNNNGTC 1 cut(s) 48
AjiI CACGTC 1 cut(s) 242
AjnI CCWGG 1 cut(s) 888
AluBI AGCT 3 cut(s) 142, 425, 469
AluI AGCT 3 cut(s) 142, 425, 469
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 2 cut(s) 232, 313
AlwI GGATC 1 cut(s) 61
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 2 cut(s) 158, 488
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 1 cut(s) 7
BccI CCATC 2 cut(s) 605, 626
BciT130I CCWGG 1 cut(s) 890
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 2 cut(s) 232, 313
BfaI CTAG 1 cut(s) 53
BfmI CTRYAG 1 cut(s) 686
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 1 cut(s) 488
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 158, 488
BmiI GGNNCC 2 cut(s) 330, 490
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 1 cut(s) 863
BmuI ACTGGG 1 cut(s) 863
BpiI GAAGAC 1 cut(s) 73
Bsa29I ATCGAT 1 cut(s) 931
BsaJI CCNNGG 4 cut(s) 161, 316, 888, 889
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 874
Bse1I ACTGG 1 cut(s) 869
BseBI CCWGG 1 cut(s) 890
BseCI ATCGAT 1 cut(s) 931
BseDI CCNNGG 4 cut(s) 161, 316, 888, 889
BseGI GGATG 1 cut(s) 597
BseLI CCNNNNNNNGG 2 cut(s) 454, 874
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 1 cut(s) 869
BseXI GCAGC 1 cut(s) 7
BseYI CCCAGC 1 cut(s) 836
BsgI GTGCAG 1 cut(s) 559
BshFI GGCC 1 cut(s) 159
BshVI ATCGAT 1 cut(s) 931
BsiHKAI GWGCWC 1 cut(s) 783
BslI CCNNNNNNNGG 2 cut(s) 454, 874
BsmAI GTCTC 2 cut(s) 232, 313
BsmBI CGTCTC 1 cut(s) 232
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 783
Bsp143I GATC 4 cut(s) 66, 559, 928, 932
BspACI CCGC 3 cut(s) 326, 655, 875
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 582
BspDI ATCGAT 1 cut(s) 931
BspLI GGNNCC 2 cut(s) 330, 490
BspMAI CTGCAG 1 cut(s) 690
BspPI GGATC 1 cut(s) 61
BspQI GCTCTTC 2 cut(s) 468, 476
BsrI ACTGG 1 cut(s) 869
BssECI CCNNGG 4 cut(s) 161, 316, 888, 889
BssMI GATC 4 cut(s) 66, 559, 928, 932
BssT1I CCWWGG 2 cut(s) 161, 316
Bst2UI CCWGG 1 cut(s) 890
Bst4CI ACNGT 2 cut(s) 512, 547
Bst6I CTCTTC 3 cut(s) 468, 476, 686
BstC8I GCNNGC 1 cut(s) 854
BstDEI CTNAG 2 cut(s) 398, 590
BstF5I GGATG 1 cut(s) 597
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 4 cut(s) 69, 562, 931, 935
BstMAI GTCTC 2 cut(s) 232, 313
BstMBI GATC 4 cut(s) 66, 559, 928, 932
BstMWI GCNNNNNNNGC 3 cut(s) 652, 809, 818
BstNI CCWGG 1 cut(s) 890
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 1 cut(s) 888
BstSFI CTRYAG 1 cut(s) 686
BstV1I GCAGC 1 cut(s) 7
BstV2I GAAGAC 1 cut(s) 73
Bsu15I ATCGAT 1 cut(s) 931
BsuRI GGCC 1 cut(s) 159
BsuTUI ATCGAT 1 cut(s) 931
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 597
BtsIMutI CAGTG 2 cut(s) 160, 552
Cac8I GCNNGC 1 cut(s) 854
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 158, 488
ClaI ATCGAT 1 cut(s) 931
Csp6I GTAC 2 cut(s) 543, 594
CviAII CATG 3 cut(s) 333, 563, 853
CviJI RGCY 7 cut(s) 142, 159, 402, 425, 469, 646, 887
CviKI_1 RGCY 7 cut(s) 142, 159, 402, 425, 469, 646, 887
CviQI GTAC 2 cut(s) 543, 594
DdeI CTNAG 2 cut(s) 398, 590
DpnI GATC 4 cut(s) 68, 561, 930, 934
DpnII GATC 4 cut(s) 66, 559, 928, 932
DraI TTTAAA 2 cut(s) 274, 663
DraIII CACNNNGTG 1 cut(s) 35
DrdI GACNNNNNNGTC 1 cut(s) 385
DriI GACNNNNNGTC 1 cut(s) 48
DseDI GACNNNNNNGTC 1 cut(s) 385
Eam1104I CTCTTC 3 cut(s) 468, 476, 686
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 3 cut(s) 468, 476, 686
EciI GGCGGA 1 cut(s) 670
Eco130I CCWWGG 2 cut(s) 161, 316
Eco47I GGWCC 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 888
EcoT14I CCWWGG 2 cut(s) 161, 316
EcoT22I ATGCAT 1 cut(s) 854
ErhI CCWWGG 2 cut(s) 161, 316
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 3 cut(s) 336, 566, 856
FalI AAGNNNNNCTT 2 cut(s) 730, 762
FatI CATG 3 cut(s) 332, 562, 852
FauNDI CATATG 1 cut(s) 47
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 369
GluI GCNGC 1 cut(s) 21
GsaI CCCAGC 1 cut(s) 840
HaeIII GGCC 1 cut(s) 159
HhaI GCGC 1 cut(s) 370
Hin1II CATG 3 cut(s) 336, 566, 856
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 4 cut(s) 174, 286, 386, 878
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 5 cut(s) 42, 515, 550, 862, 899
Hpy188I TCNGA 2 cut(s) 173, 937
Hpy188III TCNNGA 3 cut(s) 64, 343, 390
Hpy8I GTNNAC 5 cut(s) 42, 515, 550, 862, 899
HpyAV CCTTC 3 cut(s) 80, 645, 740
HpyCH4III ACNGT 2 cut(s) 512, 547
HpyCH4IV ACGT 2 cut(s) 241, 783
HpyCH4V TGCA 8 cut(s) 87, 194, 294, 376, 576, 688, 821, 852
HpyF10VI GCNNNNNNNGC 3 cut(s) 652, 809, 818
HpyF3I CTNAG 2 cut(s) 398, 590
HpySE526I ACGT 2 cut(s) 241, 783
Hsp92II CATG 3 cut(s) 336, 566, 856
HspAI GCGC 1 cut(s) 368
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 4 cut(s) 66, 559, 928, 932
LguI GCTCTTC 2 cut(s) 468, 476
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 241, 783
MaeIII GTNAC 3 cut(s) 299, 428, 742
MalI GATC 4 cut(s) 68, 561, 930, 934
MboI GATC 4 cut(s) 66, 559, 928, 932
MboII GAAGA 4 cut(s) 73, 455, 463, 703
MhlI GDGCHC 1 cut(s) 783
MluCI AATT 6 cut(s) 15, 145, 393, 483, 521, 665
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 3 cut(s) 238, 458, 581
Mph1103I ATGCAT 1 cut(s) 854
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 7 cut(s) 227, 267, 273, 482, 662, 737, 924
MslI CAYNNNNRTG 1 cut(s) 826
MspA1I CMGCKG 2 cut(s) 142, 425
MspR9I CCNGG 1 cut(s) 890
MvaI CCWGG 1 cut(s) 890
MwoI GCNNNNNNNGC 3 cut(s) 652, 809, 818
NdeI CATATG 1 cut(s) 47
NdeII GATC 4 cut(s) 66, 559, 928, 932
NlaIII CATG 3 cut(s) 336, 566, 856
NlaIV GGNNCC 2 cut(s) 330, 490
NsiI ATGCAT 1 cut(s) 854
NspI RCATGY 1 cut(s) 856
PaeI GCATGC 1 cut(s) 856
PasI CCCWGGG 1 cut(s) 889
PciSI GCTCTTC 2 cut(s) 468, 476
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 3 cut(s) 174, 286, 878
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp6I CCWGG 1 cut(s) 888
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 1 cut(s) 888
PspN4I GGNNCC 2 cut(s) 330, 490
PspPI GGNCC 2 cut(s) 158, 488
PstI CTGCAG 1 cut(s) 690
PvuII CAGCTG 2 cut(s) 142, 425
RsaI GTAC 2 cut(s) 544, 595
RsaNI GTAC 2 cut(s) 543, 594
RseI CAYNNNNRTG 1 cut(s) 826
SapI GCTCTTC 2 cut(s) 468, 476
SaqAI TTAA 7 cut(s) 227, 267, 273, 482, 662, 737, 924
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 4 cut(s) 66, 559, 928, 932
Sau96I GGNCC 2 cut(s) 158, 488
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 1 cut(s) 783
SetI ASST 6 cut(s) 144, 244, 318, 427, 471, 786
SfcI CTRYAG 1 cut(s) 686
SinI GGWCC 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 826
SphI GCATGC 1 cut(s) 856
Sse9I AATT 6 cut(s) 15, 145, 393, 483, 521, 665
SsiI CCGC 3 cut(s) 326, 655, 875
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 2 cut(s) 161, 316
TaaI ACNGT 2 cut(s) 512, 547
TaiI ACGT 2 cut(s) 244, 786
TaqI TCGA 1 cut(s) 931
TasI AATT 6 cut(s) 15, 145, 393, 483, 521, 665
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 3 cut(s) 174, 286, 878
Tru1I TTAA 7 cut(s) 227, 267, 273, 482, 662, 737, 924
Tru9I TTAA 7 cut(s) 227, 267, 273, 482, 662, 737, 924
TscAI CASTG 2 cut(s) 160, 552
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 172
TspGWI ACGGA 1 cut(s) 723
TspRI CASTG 2 cut(s) 160, 552
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 1 cut(s) 393
XceI RCATGY 1 cut(s) 856
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.