FvH4_5g28140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010894
Physical Location & Seq
Forward (+)
19337669 .. 19340132
2464 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28140.t2

Sequence Viewer

Length: 1179 bp
ATGCCCCTGACGAGAATTGCTGCCGATACACTCGGTGTGTTGACCGTATGTCTAGTTGCTCTCTTGATCCTTCTGGGTTCACTCTGCATCATCTACTTGTTTTACTTTCGCTCTCGTATTCGTAGTCAGGGTTTTGTTCAACTAAGTTATTTCAGTGGCCCTTGGATAATCCGTATAACTTTCATATTGTTTGCCATTTGGTGGGGAATTGGTGAAATTGTCCGGTTAAGTTTGTTGAGACGGGAAGGAAGATTCTTGAATACCCTTAACTTGAAATGGCAGGAGACTGTCTGCAAATGCTATATTGTCTCAAACCTGGGGTTTGCAGAACCTTGCCTATTCCTGACCCTCGTGTTCCTACTTCGTGCTCCTTTGCATACAATGGAGTCAGGTATTCTAAGCCGACAGTGGAATGGGAAAACAGCTGGTTACATTCTTTTCTACTGCCTCCCAATACTTCTTCTTCAGCTTGTTGTCATAGTAGTTGGACCCAAACTGCACAATATTAAGTTGCCTTTGTACTTCACCAGTACAATGAACAAGACTGATCAGATTGTTTTCTGCACTTACCCTTTATTGAGTACGATACTTCTTGGGATTTTTGCCATCATTCTAACCGCATACGTGTTTTGGCTTGGAAGGCAGATTTTAAAGTTGGTCATCAATAAGGGTCTGCAGAAAAGAGTTTATACATTGATATTCTCAGTTTCAAGTTTCCTTCCATTGAGGGTTACTTTGCTTGGTTTCTCTGTTTTATCTAAACCAGAGCACTTTCAGTTTGAAGCTCTTGCTTTCTTGGCTTTTCTTGCCCTTCTATGTTGTGCGGGTGTGTGTATATGCACGCTTGTTTACTGCCCGGTTGCAGATTCTTTAGCTCTGGGGAGTTTACAGGACTTGGAGGGTAGGAGGAGACTTGATGATGGTCAAAATGACACCATTTCTCTTATTGCTAACCAGAGTCATATGGAAGAAAGTGTTGGAATTAGTCCCAGTAGAAACTCTGATGTGTCAACCAAGCAGCGGGGATCAATTTCATTCCGTGCTTTCGATAAGGACAGTTCTTCTAGGGGAGCGTTTGTGGAATTGAGCCTTTTCTCTCCTAGTGAAGATGCAACACCCCCAGAATCACCTCCGCTCCTTGGCTGGCCTATGCGTCCCTCTCCTTCACCTCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

43.92

Weight (kDa)

9.08

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57680 AT1G57680 AT1G57680
fragaria_vesca FvH4_5g28140 FvH4_5g28140
malus_domestica MD08G1245000.v1.1 MD15G1440100.v1.1
prunus_persica Prupe.1G582400_v2.0.a1
pyrus_communis pycom08g21250 pycom15g38800
rosa_chinensis RchiOBHm_Chr7g0220291
rosa_laevigata RLG00000002242
rosa_multiflora Rmu_sc0001136.1_g000030
rosa_roxburghii Rroxscaffold_3G00239640
rosa_rugosa Rorug07G0191900.1
rosa_samantha Rh7AG333900 Rh7BG323200 Rh7CG351600 Rh7DG330200
rosa_wichuraiana Rw7G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 201
AccBSI CCGCTC 1 cut(s) 1135
AciI CCGC 4 cut(s) 618, 824, 1021, 1133
AclWI GGATC 2 cut(s) 61, 1033
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 3 cut(s) 521, 532, 583
AfiI CCNNNNNNNGG 3 cut(s) 201, 1020, 1139
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 5 cut(s) 140, 259, 274, 711, 782
AhdI GACNNNNNGTC 1 cut(s) 48
AjnI CCWGG 1 cut(s) 315
AjuI GAANNNNNNNTTGG 2 cut(s) 960, 992
AluBI AGCT 4 cut(s) 425, 469, 785, 875
AluI AGCT 4 cut(s) 425, 469, 785, 875
Alw21I GWGCWC 2 cut(s) 370, 771
Alw26I GTCTC 4 cut(s) 232, 278, 313, 904
AlwI GGATC 2 cut(s) 61, 1033
AoxI GGCC 2 cut(s) 157, 1145
ApeKI GCWGC 2 cut(s) 20, 1018
AspS9I GGNCC 2 cut(s) 158, 488
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 5 cut(s) 224, 517, 1119, 1158, 1163
AvaII GGWCC 1 cut(s) 488
BauI CACGAG 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 370, 771
BbvI GCAGC 2 cut(s) 7, 1030
BccI CCATC 2 cut(s) 614, 914
BciT130I CCWGG 1 cut(s) 317
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 4 cut(s) 232, 278, 313, 904
BfaI CTAG 3 cut(s) 53, 1065, 1101
BfmI CTRYAG 1 cut(s) 674
BisI GCNGC 2 cut(s) 21, 1019
BlsI GCNGC 2 cut(s) 22, 1020
Bme1390I CCNGG 2 cut(s) 317, 857
Bme18I GGWCC 1 cut(s) 488
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 158, 488
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 2 cut(s) 317, 857
BmrI ACTGGG 1 cut(s) 984
BmsI GCATC 2 cut(s) 96, 1099
BmuI ACTGGG 1 cut(s) 984
BpuMI CCSGG 1 cut(s) 857
BsaAI YACGTR 1 cut(s) 625
BsaJI CCNNGG 3 cut(s) 161, 316, 1138
BsaWI WCCGGW 1 cut(s) 222
BsaXI ACNNNNNCTCC 4 cut(s) 1062, 1092, 1119, 1149
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 1020, 1139
Bse1I ACTGG 3 cut(s) 528, 990, 1174
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 3 cut(s) 161, 316, 1138
BseLI CCNNNNNNNGG 3 cut(s) 201, 1020, 1139
BseMII CTCAG 1 cut(s) 717
BseNI ACTGG 3 cut(s) 528, 990, 1174
BseRI GAGGAG 1 cut(s) 922
BseXI GCAGC 2 cut(s) 7, 1030
BsgI GTGCAG 2 cut(s) 482, 547
BshFI GGCC 2 cut(s) 159, 1147
BsiHKAI GWGCWC 2 cut(s) 370, 771
BsiSI CCGG 2 cut(s) 223, 857
BslFI GGGAC 2 cut(s) 972, 1140
BslI CCNNNNNNNGG 3 cut(s) 201, 1020, 1139
BsmAI GTCTC 4 cut(s) 232, 278, 313, 904
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 972, 1140
BsnI GGCC 2 cut(s) 159, 1147
Bsp1286I GDGCHC 2 cut(s) 370, 771
Bsp143I GATC 3 cut(s) 66, 547, 1025
BspACI CCGC 4 cut(s) 618, 824, 1021, 1133
BspANI GGCC 2 cut(s) 159, 1147
BspCNI CTCAG 1 cut(s) 716
BspLI GGNNCC 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 678
BspPI GGATC 2 cut(s) 61, 1033
BsrBI CCGCTC 1 cut(s) 1135
BsrI ACTGG 3 cut(s) 528, 990, 1174
BssECI CCNNGG 3 cut(s) 161, 316, 1138
BssMI GATC 3 cut(s) 66, 547, 1025
BssSI CACGAG 1 cut(s) 350
BssT1I CCWWGG 2 cut(s) 161, 1138
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 4 cut(s) 46, 289, 408, 1058
BstBAI YACGTR 1 cut(s) 625
BstC8I GCNNGC 2 cut(s) 842, 1145
BstDEI CTNAG 3 cut(s) 143, 398, 703
BstKTI GATC 3 cut(s) 69, 550, 1028
BstMAI GTCTC 4 cut(s) 232, 278, 313, 904
BstMBI GATC 3 cut(s) 66, 547, 1025
BstMWI GCNNNNNNNGC 3 cut(s) 640, 797, 806
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 315, 855
BstSFI CTRYAG 1 cut(s) 674
BstV1I GCAGC 2 cut(s) 7, 1030
BsuRI GGCC 2 cut(s) 159, 1147
BtsIMutI CAGTG 2 cut(s) 160, 413
Cac8I GCNNGC 2 cut(s) 842, 1145
Cfr13I GGNCC 2 cut(s) 158, 488
CseI GACGC 1 cut(s) 1142
Csp6I GTAC 3 cut(s) 520, 531, 582
CviQI GTAC 3 cut(s) 520, 531, 582
DdeI CTNAG 3 cut(s) 143, 398, 703
DpnI GATC 3 cut(s) 68, 549, 1027
DpnII GATC 3 cut(s) 66, 547, 1025
DraI TTTAAA 1 cut(s) 651
DraIII CACNNNGTG 1 cut(s) 35
DriI GACNNNNNGTC 1 cut(s) 48
Eam1105I GACNNNNNGTC 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 161, 1138
Eco47I GGWCC 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 2 cut(s) 161, 1138
ErhI CCWWGG 2 cut(s) 161, 1138
Esp3I CGTCTC 1 cut(s) 232
FaqI GGGAC 2 cut(s) 972, 1140
FauI CCCGC 2 cut(s) 817, 1014
FauNDI CATATG 1 cut(s) 963
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 21, 1019
Fsp4HI GCNGC 2 cut(s) 21, 1019
FspBI CTAG 3 cut(s) 53, 1065, 1101
GluI GCNGC 2 cut(s) 21, 1019
HaeIII GGCC 2 cut(s) 159, 1147
HapII CCGG 2 cut(s) 223, 857
HgaI GACGC 1 cut(s) 1142
HincII GTYRAC 2 cut(s) 42, 1011
HindII GTYRAC 2 cut(s) 42, 1011
HinfI GANTC 5 cut(s) 252, 386, 866, 958, 1124
HpaII CCGG 2 cut(s) 223, 857
HphI GGTGA 5 cut(s) 224, 517, 1119, 1158, 1163
Hpy166II GTNNAC 5 cut(s) 42, 80, 850, 887, 1011
Hpy188I TCNGA 2 cut(s) 552, 1003
Hpy188III TCNNGA 3 cut(s) 64, 256, 343
Hpy8I GTNNAC 5 cut(s) 42, 80, 850, 887, 1011
HpyAV CCTTC 6 cut(s) 80, 239, 633, 728, 821, 1173
HpyCH4III ACNGT 4 cut(s) 46, 289, 408, 1058
HpyCH4IV ACGT 1 cut(s) 624
HpyF10VI GCNNNNNNNGC 3 cut(s) 640, 797, 806
HpyF3I CTNAG 3 cut(s) 143, 398, 703
HpySE526I ACGT 1 cut(s) 624
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 3 cut(s) 66, 547, 1025
LmnI GCTCC 3 cut(s) 373, 1070, 1140
Lsp1109I GCAGC 2 cut(s) 7, 1030
LweI GCATC 2 cut(s) 96, 1099
MaeI CTAG 3 cut(s) 53, 1065, 1101
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 2 cut(s) 428, 730
MalI GATC 3 cut(s) 68, 549, 1027
MbiI CCGCTC 1 cut(s) 1135
MboI GATC 3 cut(s) 66, 547, 1025
MboII GAAGA 6 cut(s) 261, 452, 455, 980, 1053, 1118
MhlI GDGCHC 2 cut(s) 370, 771
MluCI AATT 6 cut(s) 15, 207, 216, 981, 1029, 1082
MlyI GAGTC 2 cut(s) 395, 967
MmeI TCCRAC 2 cut(s) 466, 958
MnlI CCTC 8 cut(s) 359, 458, 720, 892, 900, 1140, 1168, 1179
MseI TTAA 4 cut(s) 227, 267, 507, 650
MspA1I CMGCKG 2 cut(s) 425, 1021
MspI CCGG 2 cut(s) 223, 857
MspR9I CCNGG 2 cut(s) 317, 857
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 640, 797, 806
NciI CCSGG 1 cut(s) 857
NdeI CATATG 1 cut(s) 963
NdeII GATC 3 cut(s) 66, 547, 1025
NlaIV GGNNCC 1 cut(s) 490
PfeI GAWTC 3 cut(s) 252, 866, 1124
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 2 cut(s) 22, 1020
PleI GAGTC 2 cut(s) 394, 966
PpsI GAGTC 2 cut(s) 394, 966
Ppu21I YACGTR 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 2 cut(s) 158, 488
PstI CTGCAG 1 cut(s) 678
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 3 cut(s) 521, 532, 583
RsaNI GTAC 3 cut(s) 520, 531, 582
SaqAI TTAA 4 cut(s) 227, 267, 507, 650
SatI GCNGC 2 cut(s) 21, 1019
Sau3AI GATC 3 cut(s) 66, 547, 1025
Sau96I GGNCC 2 cut(s) 158, 488
SchI GAGTC 2 cut(s) 395, 967
ScrFI CCNGG 2 cut(s) 317, 857
SduI GDGCHC 2 cut(s) 370, 771
SfaNI GCATC 2 cut(s) 96, 1099
SfcI CTRYAG 1 cut(s) 674
SinI GGWCC 1 cut(s) 488
Sse9I AATT 6 cut(s) 15, 207, 216, 981, 1029, 1082
SsiI CCGC 4 cut(s) 618, 824, 1021, 1133
SspI AATATT 1 cut(s) 505
SspMI CTAG 3 cut(s) 53, 1065, 1101
StyD4I CCNGG 2 cut(s) 315, 855
StyI CCWWGG 2 cut(s) 161, 1138
TaaI ACNGT 4 cut(s) 46, 289, 408, 1058
TaiI ACGT 1 cut(s) 627
TaqI TCGA 1 cut(s) 1047
TasI AATT 6 cut(s) 15, 207, 216, 981, 1029, 1082
TatI WGTACW 2 cut(s) 519, 530
TfiI GAWTC 3 cut(s) 252, 866, 1124
Tru1I TTAA 4 cut(s) 227, 267, 507, 650
Tru9I TTAA 4 cut(s) 227, 267, 507, 650
TscAI CASTG 2 cut(s) 160, 413
TseI GCWGC 2 cut(s) 20, 1018
TspDTI ATGAA 3 cut(s) 172, 551, 1023
TspGWI ACGGA 2 cut(s) 161, 1028
TspRI CASTG 2 cut(s) 160, 413
Van91I CCANNNNNTGG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 488
XspI CTAG 3 cut(s) 53, 1065, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.