pycom15g38800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010894
Physical Location & Seq
Forward (+)
38553608 .. 38554829
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g38800.2

Sequence Viewer

Length: 1176 bp
ATGCCCCTGACGAGTATTGCTGCCGATACACTCGGTGTGTTGACCATATGTCTAGTTGCTCTATCGATCCTTCTTGGTTTCCTCTGCATTATTTACTTGTTTTACTTTCGCTCTCGCATTCGTAGTCAGGGTTTTATTCAGCTGGGTTATTTCAGTGGCCCTTGGATTATCCGAATCACTTTCATCGTGTTTGCAATCTGGTGGGGTTTCGGTGAAATTGTCCGTTTAAGTCTGTTGAGACGTGAGGGGAGAGTGTTGAACGCCCTTAACTTGAAATGGCAGGAGACTCTTTGCAAATGTTACATTGTCTCAAACCTTGGGTTTGCAGAACCATGCCTATTCCTGACTCTTGTGTTTCTACTTCGTGCGCCCTTGCAAACAATGGAGACTGGAATTCTAAGCCAAACGTGGAATGGGAAAACAGCTGGTTACATTTTTTTCTTTTGCCTTCCAGTGGTTGCTCTTCAGCTCTTTGTTATTTTAATCGGACCCGAACTCTACAGGAATGAGAGTTTACGTAAATTGCCTTCCTACTTCACAAGTACAGTGCACAAGACTGATCACATTGCCCTCTGCACTTACCCCTTGCTGAGTACCATCCTCCTTGGGATTTTTGCAATCATTCTTACTGCCTACTTGTTTTGGCTTGGAAGGCAGATTTTGAAATTGGTCATCAACAAGGGTCTACAGAAGAGAGTTTATACATTGATATTCTCGGTTTCAAGTTTCCTTCCATTAAGAGTTACTTTGCTTGGTTTCTCTGTTTTATCTAAACCAGAGCACATTCAGTTTGAAGCTCTTGCTTTCTTGGCTTTTCTTGCACTTTTATGTTGTGCCGGGGTGTGTATATGCATGCTTGTTTACTGCCCTGTTGCGGATTCTTTAGCCCTGGGGAGTTTACAGGACTTGGAGAGTAGGAGAAGTCATATGGAGGAAAGTTCTGGAATCAGCCCATGTAGAAACTCTGATGTGTCAGCAAAGCGTGGATCAATTTCTTTTCGTACTTTGGAAAGGGAGGAGGGTTCTTCTAGGGTACCCTTTGTGGAACTGAGCCTCTTCTCTCCTAGTCGAGATGCATCACCCCCGGACTCACCTCCGCTGCTCGGGTGGCCCATGCGCCCCCTTCCATCATCTCACTCACCAGTAGTTCAAGTTCACGGAACCACAGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

392

Amino Acids

43.75

Weight (kDa)

9.13

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57680 AT1G57680 AT1G57680
fragaria_vesca FvH4_5g28140 FvH4_5g28140
malus_domestica MD08G1245000.v1.1 MD15G1440100.v1.1
prunus_persica Prupe.1G582400_v2.0.a1
pyrus_communis pycom08g21250 pycom15g38800
rosa_chinensis RchiOBHm_Chr7g0220291
rosa_laevigata RLG00000002242
rosa_multiflora Rmu_sc0001136.1_g000030
rosa_roxburghii Rroxscaffold_3G00239640
rosa_rugosa Rorug07G0191900.1
rosa_samantha Rh7AG333900 Rh7BG323200 Rh7CG351600 Rh7DG330200
rosa_wichuraiana Rw7G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1033
AccB1I GGYRCC 1 cut(s) 1033
AccI GTMKAC 1 cut(s) 685
AciI CCGC 2 cut(s) 875, 1097
AclWI GGATC 2 cut(s) 61, 994
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 4 cut(s) 544, 595, 1003, 1035
AfiI CCNNNNNNNGG 3 cut(s) 454, 874, 1103
AgsI TTSAA 6 cut(s) 259, 274, 664, 723, 794, 1151
AhdI GACNNNNNGTC 1 cut(s) 48
AjiI CACGTC 1 cut(s) 242
AjnI CCWGG 1 cut(s) 888
AluBI AGCT 5 cut(s) 142, 425, 469, 797, 1169
AluI AGCT 5 cut(s) 142, 425, 469, 797, 1169
Alw21I GWGCWC 2 cut(s) 552, 783
Alw26I GTCTC 4 cut(s) 232, 278, 313, 380
Alw44I GTGCAC 1 cut(s) 548
AlwI GGATC 2 cut(s) 61, 994
Ama87I CYCGRG 1 cut(s) 1103
AoxI GGCC 2 cut(s) 157, 1109
ApaLI GTGCAC 1 cut(s) 548
ApeKI GCWGC 2 cut(s) 20, 1099
ApoI RAATTY 1 cut(s) 393
Asp718I GGTACC 1 cut(s) 1033
AspLEI GCGC 2 cut(s) 370, 1119
AspS9I GGNCC 3 cut(s) 158, 488, 1110
AsuC2I CCSGG 2 cut(s) 838, 1085
AsuHPI GGTGA 4 cut(s) 224, 1071, 1083, 1131
AvaI CYCGRG 1 cut(s) 1103
AvaII GGWCC 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 1033
BarI GAAGNNNNNNTAC 2 cut(s) 511, 543
Bbv12I GWGCWC 2 cut(s) 552, 783
BbvI GCAGC 2 cut(s) 7, 1086
BccI CCATC 2 cut(s) 605, 1135
BciT130I CCWGG 1 cut(s) 890
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 2 cut(s) 838, 1085
BcoDI GTCTC 4 cut(s) 232, 278, 313, 380
BfaI CTAG 4 cut(s) 53, 1029, 1065, 1170
BfmI CTRYAG 2 cut(s) 499, 686
BisI GCNGC 2 cut(s) 21, 1100
BlsI GCNGC 2 cut(s) 22, 1101
Bme1390I CCNGG 3 cut(s) 838, 890, 1085
Bme18I GGWCC 1 cut(s) 488
BmeRI GACNNNNNGTC 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 1103
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 3 cut(s) 158, 488, 1110
BmiI GGNNCC 3 cut(s) 490, 1035, 1162
BmrFI CCNGG 3 cut(s) 838, 890, 1085
BmsI GCATC 2 cut(s) 1063, 1085
BpuMI CCSGG 2 cut(s) 838, 1085
Bsa29I ATCGAT 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 518
BsaJI CCNNGG 7 cut(s) 161, 316, 604, 837, 888, 889, 1083
Bsc4I CCNNNNNNNGG 3 cut(s) 454, 874, 1103
Bse1I ACTGG 3 cut(s) 394, 452, 1142
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 890
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 7 cut(s) 161, 316, 604, 837, 888, 889, 1083
BseGI GGATG 1 cut(s) 597
BseLI CCNNNNNNNGG 3 cut(s) 454, 874, 1103
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 2 cut(s) 581, 1040
BseNI ACTGG 3 cut(s) 394, 452, 1142
BseRI GAGGAG 1 cut(s) 1031
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 2 cut(s) 7, 1086
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 559
BshFI GGCC 2 cut(s) 159, 1111
BshNI GGYRCC 1 cut(s) 1033
BshVI ATCGAT 1 cut(s) 65
BsiHKAI GWGCWC 2 cut(s) 552, 783
BsiHKCI CYCGRG 1 cut(s) 1103
BsiSI CCGG 2 cut(s) 837, 1085
BslI CCNNNNNNNGG 3 cut(s) 454, 874, 1103
BsmAI GTCTC 4 cut(s) 232, 278, 313, 380
BsmBI CGTCTC 1 cut(s) 232
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 2 cut(s) 159, 1111
BsoBI CYCGRG 1 cut(s) 1103
Bsp1286I GDGCHC 2 cut(s) 552, 783
Bsp143I GATC 3 cut(s) 66, 559, 986
BspACI CCGC 2 cut(s) 875, 1097
BspANI GGCC 2 cut(s) 159, 1111
BspCNI CTCAG 2 cut(s) 582, 1041
BspDI ATCGAT 1 cut(s) 65
BspLI GGNNCC 3 cut(s) 490, 1035, 1162
BspPI GGATC 2 cut(s) 61, 994
BspQI GCTCTTC 1 cut(s) 468
BspT107I GGYRCC 1 cut(s) 1033
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 3 cut(s) 394, 452, 1142
BssECI CCNNGG 7 cut(s) 161, 316, 604, 837, 888, 889, 1083
BssMI GATC 3 cut(s) 66, 559, 986
BssT1I CCWWGG 3 cut(s) 161, 316, 604
Bst2UI CCWGG 1 cut(s) 890
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 3 cut(s) 468, 686, 1061
BstBAI YACGTR 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 854
BstDEI CTNAG 3 cut(s) 398, 590, 1049
BstF5I GGATG 1 cut(s) 597
BstHHI GCGC 2 cut(s) 370, 1119
BstKTI GATC 3 cut(s) 69, 562, 989
BstMAI GTCTC 4 cut(s) 232, 278, 313, 380
BstMBI GATC 3 cut(s) 66, 559, 986
BstMWI GCNNNNNNNGC 4 cut(s) 652, 809, 818, 1108
BstNI CCWGG 1 cut(s) 890
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 3 cut(s) 836, 888, 1083
BstSFI CTRYAG 2 cut(s) 499, 686
BstSLI GKGCMC 1 cut(s) 552
BstSNI TACGTA 1 cut(s) 518
BstV1I GCAGC 2 cut(s) 7, 1086
Bsu15I ATCGAT 1 cut(s) 65
BsuRI GGCC 2 cut(s) 159, 1111
BsuTUI ATCGAT 1 cut(s) 65
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 597
BtsIMutI CAGTG 3 cut(s) 160, 459, 552
Cac8I GCNNGC 1 cut(s) 854
CfoI GCGC 2 cut(s) 370, 1119
Cfr13I GGNCC 3 cut(s) 158, 488, 1110
ClaI ATCGAT 1 cut(s) 65
Csp6I GTAC 4 cut(s) 543, 594, 1002, 1034
CviAII CATG 4 cut(s) 333, 853, 954, 1114
CviQI GTAC 4 cut(s) 543, 594, 1002, 1034
DdeI CTNAG 3 cut(s) 398, 590, 1049
DpnI GATC 3 cut(s) 68, 561, 988
DpnII GATC 3 cut(s) 66, 559, 986
DraIII CACNNNGTG 1 cut(s) 35
DriI GACNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 3 cut(s) 468, 686, 1061
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 3 cut(s) 468, 686, 1061
Eco105I TACGTA 1 cut(s) 518
Eco130I CCWWGG 3 cut(s) 161, 316, 604
Eco47I GGWCC 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 1103
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 888
EcoT14I CCWWGG 3 cut(s) 161, 316, 604
EcoT22I ATGCAT 2 cut(s) 854, 1078
ErhI CCWWGG 3 cut(s) 161, 316, 604
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 4 cut(s) 336, 856, 957, 1117
FalI AAGNNNNNCTT 2 cut(s) 730, 762
FatI CATG 4 cut(s) 332, 852, 953, 1113
FauNDI CATATG 2 cut(s) 47, 927
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 2 cut(s) 21, 1100
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 2 cut(s) 21, 1100
FspBI CTAG 4 cut(s) 53, 1029, 1065, 1170
GlaI GCGC 2 cut(s) 369, 1118
GluI GCNGC 2 cut(s) 21, 1100
GsaI CCCAGC 1 cut(s) 146
HaeIII GGCC 2 cut(s) 159, 1111
HapII CCGG 2 cut(s) 837, 1085
HhaI GCGC 2 cut(s) 370, 1119
Hin1II CATG 4 cut(s) 336, 856, 957, 1117
Hin6I GCGC 2 cut(s) 368, 1117
HinP1I GCGC 2 cut(s) 368, 1117
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 6 cut(s) 174, 286, 346, 878, 945, 1088
HpaII CCGG 2 cut(s) 837, 1085
HphI GGTGA 4 cut(s) 224, 1071, 1083, 1131
Hpy166II GTNNAC 7 cut(s) 42, 515, 550, 686, 862, 899, 1156
Hpy188I TCNGA 3 cut(s) 173, 488, 967
Hpy188III TCNNGA 3 cut(s) 343, 942, 1070
Hpy8I GTNNAC 7 cut(s) 42, 515, 550, 686, 862, 899, 1156
HpyAV CCTTC 6 cut(s) 80, 458, 537, 645, 740, 1133
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 3 cut(s) 241, 407, 517
HpyF10VI GCNNNNNNNGC 4 cut(s) 652, 809, 818, 1108
HpyF3I CTNAG 3 cut(s) 398, 590, 1049
HpySE526I ACGT 3 cut(s) 241, 407, 517
Hsp92II CATG 4 cut(s) 336, 856, 957, 1117
HspAI GCGC 2 cut(s) 368, 1117
KpnI GGTACC 1 cut(s) 1037
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 3 cut(s) 66, 559, 986
LguI GCTCTTC 1 cut(s) 468
Lsp1109I GCAGC 2 cut(s) 7, 1086
LweI GCATC 2 cut(s) 1063, 1085
MaeI CTAG 4 cut(s) 53, 1029, 1065, 1170
MaeII ACGT 3 cut(s) 241, 407, 517
MaeIII GTNAC 3 cut(s) 299, 428, 742
MalI GATC 3 cut(s) 68, 561, 988
MboI GATC 3 cut(s) 66, 559, 986
MboII GAAGA 4 cut(s) 455, 703, 1017, 1048
MhlI GDGCHC 2 cut(s) 552, 783
MluCI AATT 5 cut(s) 216, 393, 521, 665, 990
MlyI GAGTC 3 cut(s) 280, 340, 1082
MnlI CCTC 9 cut(s) 92, 238, 581, 611, 925, 1009, 1012, 1064, 1104
Mph1103I ATGCAT 2 cut(s) 854, 1078
MseI TTAA 4 cut(s) 227, 267, 482, 737
MslI CAYNNNNRTG 1 cut(s) 826
MspA1I CMGCKG 3 cut(s) 142, 425, 1099
MspI CCGG 2 cut(s) 837, 1085
MspR9I CCNGG 3 cut(s) 838, 890, 1085
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 1 cut(s) 890
MwoI GCNNNNNNNGC 4 cut(s) 652, 809, 818, 1108
NciI CCSGG 2 cut(s) 838, 1085
NdeI CATATG 2 cut(s) 47, 927
NdeII GATC 3 cut(s) 66, 559, 986
NlaIII CATG 4 cut(s) 336, 856, 957, 1117
NlaIV GGNNCC 3 cut(s) 490, 1035, 1162
NsiI ATGCAT 2 cut(s) 854, 1078
NspI RCATGY 1 cut(s) 856
PaeI GCATGC 1 cut(s) 856
PasI CCCWGGG 1 cut(s) 889
PciSI GCTCTTC 1 cut(s) 468
PctI GAATGC 1 cut(s) 117
PfeI GAWTC 3 cut(s) 174, 878, 945
PkrI GCNGC 2 cut(s) 22, 1101
PleI GAGTC 3 cut(s) 280, 340, 1082
PpsI GAGTC 3 cut(s) 280, 340, 1082
Ppu21I YACGTR 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 888
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 888
PspN4I GGNNCC 3 cut(s) 490, 1035, 1162
PspPI GGNCC 3 cut(s) 158, 488, 1110
PsrI GAACNNNNNNTAC 2 cut(s) 1137, 1169
PvuII CAGCTG 2 cut(s) 142, 425
RsaI GTAC 4 cut(s) 544, 595, 1003, 1035
RsaNI GTAC 4 cut(s) 543, 594, 1002, 1034
RseI CAYNNNNRTG 1 cut(s) 826
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 4 cut(s) 227, 267, 482, 737
SatI GCNGC 2 cut(s) 21, 1100
Sau3AI GATC 3 cut(s) 66, 559, 986
Sau96I GGNCC 3 cut(s) 158, 488, 1110
SchI GAGTC 3 cut(s) 280, 340, 1082
ScrFI CCNGG 3 cut(s) 838, 890, 1085
SduI GDGCHC 2 cut(s) 552, 783
SfaNI GCATC 2 cut(s) 1063, 1085
SfcI CTRYAG 2 cut(s) 499, 686
SinI GGWCC 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 826
SnaBI TACGTA 1 cut(s) 518
SphI GCATGC 1 cut(s) 856
Sse9I AATT 5 cut(s) 216, 393, 521, 665, 990
SsiI CCGC 2 cut(s) 875, 1097
SspMI CTAG 4 cut(s) 53, 1029, 1065, 1170
StyD4I CCNGG 3 cut(s) 836, 888, 1083
StyI CCWWGG 3 cut(s) 161, 316, 604
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 3 cut(s) 244, 410, 520
TaqI TCGA 2 cut(s) 65, 1069
TasI AATT 5 cut(s) 216, 393, 521, 665, 990
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 3 cut(s) 174, 878, 945
Tru1I TTAA 4 cut(s) 227, 267, 482, 737
Tru9I TTAA 4 cut(s) 227, 267, 482, 737
TscAI CASTG 3 cut(s) 160, 459, 552
TseI GCWGC 2 cut(s) 20, 1099
TspDTI ATGAA 1 cut(s) 172
TspGWI ACGGA 2 cut(s) 212, 1173
TspRI CASTG 3 cut(s) 160, 459, 552
VneI GTGCAC 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 1 cut(s) 393
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 4 cut(s) 53, 1029, 1065, 1170
Zsp2I ATGCAT 2 cut(s) 854, 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.