Rh7DG330200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010894
Physical Location & Seq
Reverse (-)
40085332 .. 40088301
2970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG330200.1

Sequence Viewer

Length: 1185 bp
ATGCCCCAGACGAGAATTGCTGCCGATACACTCGGTGTGTTGACCGTATGTCTAGTTGCTCTCTTGATCCTTCTGGGTGTCCTCTGCATCACCTACTTGTTTTACTTTCGCTGTCGTATTCGTAGTCAGGGTTTTGTTCAACTCAGTTATTTCAGTGGCCCTTGGATAATCCGAATAACTTTCATTTTGTTTGCAATCTGGTGGGGAATTGGTGAAATTATCCGGTTAAGTTTGTTGAGACGGGAAGGAAGACTGTTGAATACCCTTAACTGGAAATGGCAGGAGACTGTCTGCAAATGCTATATTGTCTCAAACCTGGGGTTTGCAGAACCTTGCCTATTCCTGACCCTTGTGTTCCTACTTCGTGCTCCTTTGCATACAATGGAGTCGGGTATTCTAAGCCGACAATGGAATGGGAAAACAGCTGGTTACATTCTTTTCTACTGCCTCCCAATGGTTCTTCTTCAGCTTGTTGTCATAGTAATTGGACCCACGCTGCACAATAATAAAAAGTTTCCTTCCTACTTTACCAGTACAATGAACAAGACTGATCAGATGGCCCTCTGCACTTACCCTTTACTGAGTACGTTACTTCTTGGGATTTTTGCCATCATTCTAACTGCCTACGTGTTTTGGCTTGGAAGGCAGATTTTAAAGATGGTCATCAATAAGGGTCTGCAGAAAAGAGTTTATACATTGATATTCTCAGTTTCAAGTTTCCTTCCATTGAGGGTTACTTTCCTTGGTTTCTCTGTTTTATCTAAACCAGAGCACTTTCAGTTTGAAGCTCTTGCTTTCTTGGCTTTTCTTGCCCTTTTATGTTGTGCGGGTGTGTGTATATGCATGCTTGTTTACTGCCCGGTTGCGGATTCTTTAGCGCTGGGGAGTTTACAGGACTTGGAGGGTAGGAGGAGACTTGATGATGGTCAAAATGACACCATTTCTCTTATTGCTAACCAGAGTCATATGGAAGAAAGTGCTGGATTTAGTCCCAGTAGAAGCTCTGATGTGTCAACAAAGCAGCGTGGATCAATTTCTTTCCGTGCTTTGGGAAAGGAGGATGGGTCTTCTAGGGGACCATTTGTGGAATTGAGCCTCTTCTCTCCTAGTGAAGATGCAACACCCCCAGAATCACCTCCGCTTCTTGGCTGGCCTATGCGTCCCTCTCCTTCACCTCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

394

Amino Acids

44.18

Weight (kDa)

9.03

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57680 AT1G57680 AT1G57680
fragaria_vesca FvH4_5g28140 FvH4_5g28140
malus_domestica MD08G1245000.v1.1 MD15G1440100.v1.1
prunus_persica Prupe.1G582400_v2.0.a1
pyrus_communis pycom08g21250 pycom15g38800
rosa_chinensis RchiOBHm_Chr7g0220291
rosa_laevigata RLG00000002242
rosa_multiflora Rmu_sc0001136.1_g000030
rosa_roxburghii Rroxscaffold_3G00239640
rosa_rugosa Rorug07G0191900.1
rosa_samantha Rh7AG333900 Rh7BG323200 Rh7CG351600 Rh7DG330200
rosa_wichuraiana Rw7G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 827, 866, 1139
AclWI GGATC 2 cut(s) 61, 1036
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 2 cut(s) 535, 586
AfeI AGCGCT 1 cut(s) 879
AfiI CCNNNNNNNGG 5 cut(s) 270, 454, 865, 1048, 1145
AflIII ACRYGT 1 cut(s) 627
AgsI TTSAA 4 cut(s) 140, 259, 714, 785
AhdI GACNNNNNGTC 1 cut(s) 48
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 4 cut(s) 425, 469, 788, 1002
AluI AGCT 4 cut(s) 425, 469, 788, 1002
Alw21I GWGCWC 2 cut(s) 370, 774
Alw26I GTCTC 4 cut(s) 232, 278, 313, 907
AlwI GGATC 2 cut(s) 61, 1036
Aor51HI AGCGCT 1 cut(s) 879
AoxI GGCC 3 cut(s) 157, 558, 1151
ApeKI GCWGC 3 cut(s) 20, 496, 1021
AspLEI GCGC 1 cut(s) 880
AspS9I GGNCC 4 cut(s) 158, 488, 559, 1076
AsuC2I CCSGG 1 cut(s) 860
AsuHPI GGTGA 5 cut(s) 82, 224, 1125, 1164, 1169
AvaII GGWCC 2 cut(s) 488, 1076
BbsI GAAGAC 2 cut(s) 256, 1059
Bbv12I GWGCWC 2 cut(s) 370, 774
BbvI GCAGC 3 cut(s) 7, 483, 1033
BccI CCATC 5 cut(s) 550, 617, 652, 917, 1055
BciT130I CCWGG 1 cut(s) 317
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 1 cut(s) 860
BcoDI GTCTC 4 cut(s) 232, 278, 313, 907
BfaI CTAG 3 cut(s) 53, 1071, 1107
BfmI CTRYAG 1 cut(s) 677
BfoI RGCGCY 1 cut(s) 881
BisI GCNGC 3 cut(s) 21, 497, 1022
BlsI GCNGC 3 cut(s) 22, 498, 1023
Bme1390I CCNGG 2 cut(s) 317, 860
Bme18I GGWCC 2 cut(s) 488, 1076
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgT120I GGNCC 4 cut(s) 158, 488, 559, 1076
BmiI GGNNCC 2 cut(s) 490, 1077
BmrFI CCNGG 2 cut(s) 317, 860
BmrI ACTGGG 1 cut(s) 987
BmsI GCATC 2 cut(s) 96, 1105
BmuI ACTGGG 1 cut(s) 987
BpiI GAAGAC 2 cut(s) 256, 1059
BpuMI CCSGG 1 cut(s) 860
BsaAI YACGTR 1 cut(s) 628
BsaBI GATNNNNATC 1 cut(s) 662
BsaJI CCNNGG 3 cut(s) 161, 316, 742
BsaWI WCCGGW 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 1049, 1079
Bsc4I CCNNNNNNNGG 5 cut(s) 270, 454, 865, 1048, 1145
Bse1I ACTGG 4 cut(s) 275, 531, 993, 1180
Bse8I GATNNNNATC 1 cut(s) 662
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 3 cut(s) 161, 316, 742
BseGI GGATG 1 cut(s) 1066
BseJI GATNNNNATC 1 cut(s) 662
BseLI CCNNNNNNNGG 5 cut(s) 270, 454, 865, 1048, 1145
BseMII CTCAG 3 cut(s) 157, 572, 720
BseNI ACTGG 4 cut(s) 275, 531, 993, 1180
BseRI GAGGAG 1 cut(s) 925
BseXI GCAGC 3 cut(s) 7, 483, 1033
BseYI CCCAGC 1 cut(s) 880
BsgI GTGCAG 2 cut(s) 482, 550
BshFI GGCC 3 cut(s) 159, 560, 1153
BsiHKAI GWGCWC 2 cut(s) 370, 774
BsiSI CCGG 2 cut(s) 223, 860
BslFI GGGAC 3 cut(s) 975, 1089, 1146
BslI CCNNNNNNNGG 5 cut(s) 270, 454, 865, 1048, 1145
BsmAI GTCTC 4 cut(s) 232, 278, 313, 907
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 3 cut(s) 975, 1089, 1146
BsnI GGCC 3 cut(s) 159, 560, 1153
Bsp1286I GDGCHC 2 cut(s) 370, 774
Bsp143I GATC 3 cut(s) 66, 550, 1028
BspACI CCGC 3 cut(s) 827, 866, 1139
BspANI GGCC 3 cut(s) 159, 560, 1153
BspCNI CTCAG 3 cut(s) 156, 573, 719
BspLI GGNNCC 2 cut(s) 490, 1077
BspMAI CTGCAG 1 cut(s) 681
BspPI GGATC 2 cut(s) 61, 1036
BsrI ACTGG 4 cut(s) 275, 531, 993, 1180
BssECI CCNNGG 3 cut(s) 161, 316, 742
BssMI GATC 3 cut(s) 66, 550, 1028
BssT1I CCWWGG 2 cut(s) 161, 742
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 3 cut(s) 46, 255, 289
Bst6I CTCTTC 1 cut(s) 1103
BstBAI YACGTR 1 cut(s) 628
BstC8I GCNNGC 2 cut(s) 845, 1151
BstDEI CTNAG 4 cut(s) 143, 398, 581, 706
BstF5I GGATG 1 cut(s) 1066
BstH2I RGCGCY 1 cut(s) 881
BstHHI GCGC 1 cut(s) 880
BstKTI GATC 3 cut(s) 69, 553, 1031
BstMAI GTCTC 4 cut(s) 232, 278, 313, 907
BstMBI GATC 3 cut(s) 66, 550, 1028
BstMWI GCNNNNNNNGC 3 cut(s) 643, 800, 809
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 847
BstSCI CCNGG 2 cut(s) 315, 858
BstSFI CTRYAG 1 cut(s) 677
BstV1I GCAGC 3 cut(s) 7, 483, 1033
BstV2I GAAGAC 2 cut(s) 256, 1059
BsuRI GGCC 3 cut(s) 159, 560, 1153
BtsCI GGATG 1 cut(s) 1066
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 845, 1151
CfoI GCGC 1 cut(s) 880
Cfr13I GGNCC 4 cut(s) 158, 488, 559, 1076
CseI GACGC 1 cut(s) 1148
Csp6I GTAC 2 cut(s) 534, 585
CviAII CATG 1 cut(s) 844
CviQI GTAC 2 cut(s) 534, 585
DdeI CTNAG 4 cut(s) 143, 398, 581, 706
DpnI GATC 3 cut(s) 68, 552, 1030
DpnII GATC 3 cut(s) 66, 550, 1028
DraI TTTAAA 1 cut(s) 654
DraIII CACNNNGTG 1 cut(s) 35
DriI GACNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 1103
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 1103
Eco130I CCWWGG 2 cut(s) 161, 742
Eco47I GGWCC 2 cut(s) 488, 1076
Eco47III AGCGCT 1 cut(s) 879
Eco57I CTGAAG 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 2 cut(s) 161, 742
EcoT22I ATGCAT 1 cut(s) 845
ErhI CCWWGG 2 cut(s) 161, 742
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 1 cut(s) 847
FaqI GGGAC 3 cut(s) 975, 1089, 1146
FatI CATG 1 cut(s) 843
FauI CCCGC 1 cut(s) 820
FauNDI CATATG 1 cut(s) 966
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 3 cut(s) 21, 497, 1022
FokI GGATG 1 cut(s) 1073
Fsp4HI GCNGC 3 cut(s) 21, 497, 1022
FspBI CTAG 3 cut(s) 53, 1071, 1107
GlaI GCGC 1 cut(s) 879
GluI GCNGC 3 cut(s) 21, 497, 1022
GsaI CCCAGC 1 cut(s) 884
HaeII RGCGCY 1 cut(s) 881
HaeIII GGCC 3 cut(s) 159, 560, 1153
HapII CCGG 2 cut(s) 223, 860
HgaI GACGC 1 cut(s) 1148
HhaI GCGC 1 cut(s) 880
Hin1II CATG 1 cut(s) 847
Hin6I GCGC 1 cut(s) 878
HinP1I GCGC 1 cut(s) 878
HincII GTYRAC 2 cut(s) 42, 1014
HindII GTYRAC 2 cut(s) 42, 1014
HinfI GANTC 4 cut(s) 386, 869, 961, 1130
HpaII CCGG 2 cut(s) 223, 860
HphI GGTGA 5 cut(s) 82, 224, 1125, 1164, 1169
Hpy166II GTNNAC 4 cut(s) 42, 853, 890, 1014
Hpy188I TCNGA 3 cut(s) 173, 555, 1006
Hpy188III TCNNGA 2 cut(s) 64, 343
Hpy8I GTNNAC 4 cut(s) 42, 853, 890, 1014
HpyAV CCTTC 6 cut(s) 80, 239, 528, 636, 731, 1179
HpyCH4III ACNGT 3 cut(s) 46, 255, 289
HpyCH4IV ACGT 2 cut(s) 587, 627
HpyF10VI GCNNNNNNNGC 3 cut(s) 643, 800, 809
HpyF3I CTNAG 4 cut(s) 143, 398, 581, 706
HpySE526I ACGT 2 cut(s) 587, 627
Hsp92II CATG 1 cut(s) 847
HspAI GCGC 1 cut(s) 878
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 3 cut(s) 66, 550, 1028
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 3 cut(s) 7, 483, 1033
LweI GCATC 2 cut(s) 96, 1105
MaeI CTAG 3 cut(s) 53, 1071, 1107
MaeII ACGT 2 cut(s) 587, 627
MaeIII GTNAC 3 cut(s) 428, 588, 733
MalI GATC 3 cut(s) 68, 552, 1030
MboI GATC 3 cut(s) 66, 550, 1028
MboII GAAGA 7 cut(s) 261, 452, 455, 983, 1059, 1090, 1124
MhlI GDGCHC 2 cut(s) 370, 774
MluCI AATT 6 cut(s) 15, 207, 216, 483, 1032, 1088
MlyI GAGTC 2 cut(s) 395, 970
Mph1103I ATGCAT 1 cut(s) 845
MseI TTAA 3 cut(s) 227, 267, 653
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 223, 860
MspR9I CCNGG 2 cut(s) 317, 860
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 643, 800, 809
NciI CCSGG 1 cut(s) 860
NdeI CATATG 1 cut(s) 966
NdeII GATC 3 cut(s) 66, 550, 1028
NlaIII CATG 1 cut(s) 847
NlaIV GGNNCC 2 cut(s) 490, 1077
NsiI ATGCAT 1 cut(s) 845
NspI RCATGY 1 cut(s) 847
PaeI GCATGC 1 cut(s) 847
PfeI GAWTC 2 cut(s) 869, 1130
PkrI GCNGC 3 cut(s) 22, 498, 1023
PleI GAGTC 2 cut(s) 394, 969
PpsI GAGTC 2 cut(s) 394, 969
Ppu21I YACGTR 1 cut(s) 628
Psp6I CCWGG 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 880
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 490, 1077
PspPI GGNCC 4 cut(s) 158, 488, 559, 1076
PstI CTGCAG 1 cut(s) 681
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 535, 586
RsaNI GTAC 2 cut(s) 534, 585
SaqAI TTAA 3 cut(s) 227, 267, 653
SatI GCNGC 3 cut(s) 21, 497, 1022
Sau3AI GATC 3 cut(s) 66, 550, 1028
Sau96I GGNCC 4 cut(s) 158, 488, 559, 1076
SchI GAGTC 2 cut(s) 395, 970
ScrFI CCNGG 2 cut(s) 317, 860
SduI GDGCHC 2 cut(s) 370, 774
SfaNI GCATC 2 cut(s) 96, 1105
SfcI CTRYAG 1 cut(s) 677
SinI GGWCC 2 cut(s) 488, 1076
SphI GCATGC 1 cut(s) 847
Sse9I AATT 6 cut(s) 15, 207, 216, 483, 1032, 1088
SsiI CCGC 3 cut(s) 827, 866, 1139
SspMI CTAG 3 cut(s) 53, 1071, 1107
StyD4I CCNGG 2 cut(s) 315, 858
StyI CCWWGG 2 cut(s) 161, 742
TaaI ACNGT 3 cut(s) 46, 255, 289
TaiI ACGT 2 cut(s) 590, 630
TasI AATT 6 cut(s) 15, 207, 216, 483, 1032, 1088
TatI WGTACW 1 cut(s) 533
TfiI GAWTC 2 cut(s) 869, 1130
Tru1I TTAA 3 cut(s) 227, 267, 653
Tru9I TTAA 3 cut(s) 227, 267, 653
TscAI CASTG 1 cut(s) 160
TseI GCWGC 3 cut(s) 20, 496, 1021
TspDTI ATGAA 2 cut(s) 172, 554
TspGWI ACGGA 1 cut(s) 1031
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 488, 1076
XceI RCATGY 1 cut(s) 847
XspI CTAG 3 cut(s) 53, 1071, 1107
Zsp2I ATGCAT 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.