MD15G1440100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010894
Physical Location & Seq
Forward (+)
54015183 .. 54018099
2917 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1440100.v1.1.491

Sequence Viewer

Length: 921 bp
ATGCTGGCAGAGAGCATGCGTGGAATCTGTGCTTCGGGTAATGCCCCTGACGAGTATTGCTGCCGATACACTCGGTGTACAATGGAGACTGGAATTCTAAGCCAAACGTGGAATGGGAAAACAGCTGGTTACGTTCTTTTCTTTTGCCTTCCAGTGGTTGCTCTTCAGCTCTTTGTTATTTTAATTGGACCCGAACTCTACAGGAATGAGAGTTTACATAAATTGCCTTCCTACTTCACAAGTACAGTGAACAAGACTGATCACATTGCCCTCTGCACTTACCCCTTGCTGAGTACCATCCTCCTTGGGATTTTTGCAATCATTCTTACTGCCTACTTGTTTTGGCTTGGAAGGCAGATTTTGAAATTGGTCATCAACAAGGGTCTACAGAAGAGAGTTTATACATTGATATTCTCGGTTTCAAGTTTCCTTCCATTAAGAGTTACTTTGCTTGGTTTCTCTGTTTTATCTAAACCAGAGCACATTCAGTTTGAAGCTCTTGCTTTCTTGGCTTTTCTTGCACTTTTATGTTGTGCCGGGGTGTGTATATGCATGCTTGTTTACTGCCCAGTTGCGGATTCTTTAGCCCTGGGGAGTTTACAGGACTTGGAGAGTAGGAGAGTTAATGATGATCAAAATGATACCATTTCTCTTATTGCTAACCAGAGTCATATGGAGGGAAGTTCTGGAATCAGCCCATGTAGAAACTCTGATGCGTCAGCAAAGCGTGGATCAATTTCGTTTCGTACTTTGGAAAGGGAGGAGGGTTCTTCTAGGGTACCCTTTGTGGAACTGAGCCTCTTCTCTCCTAGTCGAGATGCATCACCCCCGGACTCACCTCCGCTGCTCGGGTGGCCCATGCGCCCCCTTCCATCATCTCACTCACCAGTAGTTGAAGTTCACGGAACCACAGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

33.66

Weight (kDa)

7.51

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57680 AT1G57680 AT1G57680
fragaria_vesca FvH4_5g28140 FvH4_5g28140
malus_domestica MD08G1245000.v1.1 MD15G1440100.v1.1
prunus_persica Prupe.1G582400_v2.0.a1
pyrus_communis pycom08g21250 pycom15g38800
rosa_chinensis RchiOBHm_Chr7g0220291
rosa_laevigata RLG00000002242
rosa_multiflora Rmu_sc0001136.1_g000030
rosa_roxburghii Rroxscaffold_3G00239640
rosa_rugosa Rorug07G0191900.1
rosa_samantha Rh7AG333900 Rh7BG323200 Rh7CG351600 Rh7DG330200
rosa_wichuraiana Rw7G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 778
AccB1I GGYRCC 1 cut(s) 778
AccI GTMKAC 1 cut(s) 385
AciI CCGC 2 cut(s) 575, 842
AclWI GGATC 1 cut(s) 739
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 149
AdeI CACNNNGTG 1 cut(s) 75
AfaI GTAC 5 cut(s) 79, 244, 295, 748, 780
AfiI CCNNNNNNNGG 3 cut(s) 154, 574, 848
AgsI TTSAA 4 cut(s) 364, 423, 494, 896
AjnI CCWGG 1 cut(s) 588
AluBI AGCT 4 cut(s) 125, 169, 497, 914
AluI AGCT 4 cut(s) 125, 169, 497, 914
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 739
Ama87I CYCGRG 1 cut(s) 848
AoxI GGCC 1 cut(s) 854
ApeKI GCWGC 2 cut(s) 60, 844
ApoI RAATTY 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 778
AspLEI GCGC 1 cut(s) 864
AspS9I GGNCC 2 cut(s) 188, 855
AsuC2I CCSGG 2 cut(s) 538, 830
AsuHPI GGTGA 3 cut(s) 816, 828, 876
AvaI CYCGRG 1 cut(s) 848
AvaII GGWCC 1 cut(s) 188
BanI GGYRCC 1 cut(s) 778
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 2 cut(s) 47, 831
BccI CCATC 2 cut(s) 305, 880
BciT130I CCWGG 1 cut(s) 590
BclI TGATCA 2 cut(s) 259, 631
BcnI CCSGG 2 cut(s) 538, 830
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 3 cut(s) 774, 810, 915
BfmI CTRYAG 2 cut(s) 199, 386
BisI GCNGC 2 cut(s) 61, 845
BlsI GCNGC 2 cut(s) 62, 846
Bme1390I CCNGG 3 cut(s) 538, 590, 830
Bme18I GGWCC 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 848
BmgT120I GGNCC 2 cut(s) 188, 855
BmiI GGNNCC 3 cut(s) 190, 780, 907
BmrFI CCNGG 3 cut(s) 538, 590, 830
BmrI ACTGGG 1 cut(s) 563
BmsI GCATC 3 cut(s) 703, 808, 830
BmuI ACTGGG 1 cut(s) 563
BpuMI CCSGG 2 cut(s) 538, 830
BsaJI CCNNGG 5 cut(s) 304, 537, 588, 589, 828
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 574, 848
Bse1I ACTGG 4 cut(s) 94, 152, 569, 887
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 590
BseDI CCNNGG 5 cut(s) 304, 537, 588, 589, 828
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 3 cut(s) 154, 574, 848
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 2 cut(s) 281, 785
BseNI ACTGG 4 cut(s) 94, 152, 569, 887
BseRI GAGGAG 1 cut(s) 776
BseXI GCAGC 2 cut(s) 47, 831
BsgI GTGCAG 1 cut(s) 259
BshFI GGCC 1 cut(s) 856
BshNI GGYRCC 1 cut(s) 778
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 848
BsiSI CCGG 2 cut(s) 537, 830
BslI CCNNNNNNNGG 3 cut(s) 154, 574, 848
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 1 cut(s) 856
BsoBI CYCGRG 1 cut(s) 848
Bsp1286I GDGCHC 1 cut(s) 483
Bsp1407I TGTACA 1 cut(s) 77
Bsp143I GATC 3 cut(s) 259, 631, 731
BspACI CCGC 2 cut(s) 575, 842
BspANI GGCC 1 cut(s) 856
BspCNI CTCAG 2 cut(s) 282, 786
BspLI GGNNCC 3 cut(s) 190, 780, 907
BspPI GGATC 1 cut(s) 739
BspQI GCTCTTC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 778
BsrDI GCAATG 1 cut(s) 264
BsrGI TGTACA 1 cut(s) 77
BsrI ACTGG 4 cut(s) 94, 152, 569, 887
BssECI CCNNGG 5 cut(s) 304, 537, 588, 589, 828
BssMI GATC 3 cut(s) 259, 631, 731
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 3 cut(s) 168, 386, 806
BstAUI TGTACA 1 cut(s) 77
BstC8I GCNNGC 3 cut(s) 6, 17, 554
BstDEI CTNAG 3 cut(s) 98, 290, 794
BstF5I GGATG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 864
BstKTI GATC 3 cut(s) 262, 634, 734
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 3 cut(s) 259, 631, 731
BstMWI GCNNNNNNNGC 4 cut(s) 352, 509, 518, 853
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 2 cut(s) 19, 556
BstSCI CCNGG 3 cut(s) 536, 588, 828
BstSFI CTRYAG 2 cut(s) 199, 386
BstV1I GCAGC 2 cut(s) 47, 831
BsuRI GGCC 1 cut(s) 856
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 159, 252
Cac8I GCNNGC 3 cut(s) 6, 17, 554
CfoI GCGC 1 cut(s) 864
Cfr13I GGNCC 2 cut(s) 188, 855
CseI GACGC 1 cut(s) 705
Csp6I GTAC 5 cut(s) 78, 243, 294, 747, 779
CviAII CATG 4 cut(s) 16, 553, 699, 859
CviQI GTAC 5 cut(s) 78, 243, 294, 747, 779
DdeI CTNAG 3 cut(s) 98, 290, 794
DpnI GATC 3 cut(s) 261, 633, 733
DpnII GATC 3 cut(s) 259, 631, 731
DraIII CACNNNGTG 1 cut(s) 75
Eam1104I CTCTTC 3 cut(s) 168, 386, 806
EarI CTCTTC 3 cut(s) 168, 386, 806
Eco130I CCWWGG 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 588
EcoT14I CCWWGG 1 cut(s) 304
EcoT22I ATGCAT 2 cut(s) 554, 823
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 4 cut(s) 19, 556, 702, 862
FalI AAGNNNNNCTT 2 cut(s) 430, 462
FatI CATG 4 cut(s) 15, 552, 698, 858
FauNDI CATATG 1 cut(s) 672
FbaI TGATCA 2 cut(s) 259, 631
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 61, 845
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 61, 845
FspBI CTAG 3 cut(s) 774, 810, 915
GlaI GCGC 1 cut(s) 863
GluI GCNGC 2 cut(s) 61, 845
HaeIII GGCC 1 cut(s) 856
HapII CCGG 2 cut(s) 537, 830
HgaI GACGC 1 cut(s) 705
HhaI GCGC 1 cut(s) 864
Hin1II CATG 4 cut(s) 19, 556, 702, 862
Hin6I GCGC 1 cut(s) 862
HinP1I GCGC 1 cut(s) 862
HinfI GANTC 5 cut(s) 24, 578, 667, 690, 833
HpaII CCGG 2 cut(s) 537, 830
HphI GGTGA 3 cut(s) 816, 828, 876
Hpy166II GTNNAC 7 cut(s) 78, 215, 250, 386, 562, 599, 901
Hpy188I TCNGA 1 cut(s) 712
Hpy188III TCNNGA 2 cut(s) 687, 815
Hpy8I GTNNAC 7 cut(s) 78, 215, 250, 386, 562, 599, 901
HpyAV CCTTC 5 cut(s) 158, 237, 345, 440, 878
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 2 cut(s) 107, 132
HpyCH4V TGCA 5 cut(s) 276, 317, 521, 552, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 352, 509, 518, 853
HpyF3I CTNAG 3 cut(s) 98, 290, 794
HpySE526I ACGT 2 cut(s) 107, 132
Hsp92II CATG 4 cut(s) 19, 556, 702, 862
HspAI GCGC 1 cut(s) 862
KpnI GGTACC 1 cut(s) 782
Ksp22I TGATCA 2 cut(s) 259, 631
Kzo9I GATC 3 cut(s) 259, 631, 731
LguI GCTCTTC 1 cut(s) 168
Lsp1109I GCAGC 2 cut(s) 47, 831
LweI GCATC 3 cut(s) 703, 808, 830
MaeI CTAG 3 cut(s) 774, 810, 915
MaeII ACGT 2 cut(s) 107, 132
MaeIII GTNAC 2 cut(s) 128, 442
MalI GATC 3 cut(s) 261, 633, 733
MboI GATC 3 cut(s) 259, 631, 731
MboII GAAGA 4 cut(s) 155, 403, 762, 793
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 5 cut(s) 93, 183, 221, 365, 735
MlyI GAGTC 2 cut(s) 676, 827
MnlI CCTC 7 cut(s) 281, 311, 670, 754, 757, 809, 849
Mph1103I ATGCAT 2 cut(s) 554, 823
MseI TTAA 3 cut(s) 182, 437, 624
MslI CAYNNNNRTG 1 cut(s) 526
MspA1I CMGCKG 2 cut(s) 125, 844
MspI CCGG 2 cut(s) 537, 830
MspR9I CCNGG 3 cut(s) 538, 590, 830
MvaI CCWGG 1 cut(s) 590
MwoI GCNNNNNNNGC 4 cut(s) 352, 509, 518, 853
NciI CCSGG 2 cut(s) 538, 830
NdeI CATATG 1 cut(s) 672
NdeII GATC 3 cut(s) 259, 631, 731
NlaIII CATG 4 cut(s) 19, 556, 702, 862
NlaIV GGNNCC 3 cut(s) 190, 780, 907
NsiI ATGCAT 2 cut(s) 554, 823
NspI RCATGY 2 cut(s) 19, 556
PaeI GCATGC 2 cut(s) 19, 556
PasI CCCWGGG 1 cut(s) 589
PciSI GCTCTTC 1 cut(s) 168
PfeI GAWTC 3 cut(s) 24, 578, 690
PkrI GCNGC 2 cut(s) 62, 846
PleI GAGTC 2 cut(s) 675, 827
PpsI GAGTC 2 cut(s) 675, 827
Psp6I CCWGG 1 cut(s) 588
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 190, 780, 907
PspPI GGNCC 2 cut(s) 188, 855
PsrI GAACNNNNNNTAC 2 cut(s) 882, 914
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 5 cut(s) 79, 244, 295, 748, 780
RsaNI GTAC 5 cut(s) 78, 243, 294, 747, 779
RseI CAYNNNNRTG 1 cut(s) 526
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 3 cut(s) 182, 437, 624
SatI GCNGC 2 cut(s) 61, 845
Sau3AI GATC 3 cut(s) 259, 631, 731
Sau96I GGNCC 2 cut(s) 188, 855
SchI GAGTC 2 cut(s) 676, 827
ScrFI CCNGG 3 cut(s) 538, 590, 830
SduI GDGCHC 1 cut(s) 483
SetI ASST 7 cut(s) 110, 127, 135, 171, 499, 841, 916
SfaNI GCATC 3 cut(s) 703, 808, 830
SfcI CTRYAG 2 cut(s) 199, 386
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 526
SphI GCATGC 2 cut(s) 19, 556
Sse9I AATT 5 cut(s) 93, 183, 221, 365, 735
SsiI CCGC 2 cut(s) 575, 842
SspMI CTAG 3 cut(s) 774, 810, 915
StyD4I CCNGG 3 cut(s) 536, 588, 828
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 2 cut(s) 110, 135
TaqI TCGA 1 cut(s) 814
TasI AATT 5 cut(s) 93, 183, 221, 365, 735
TatI WGTACW 2 cut(s) 77, 242
TfiI GAWTC 3 cut(s) 24, 578, 690
Tru1I TTAA 3 cut(s) 182, 437, 624
Tru9I TTAA 3 cut(s) 182, 437, 624
TscAI CASTG 2 cut(s) 159, 252
TseI GCWGC 2 cut(s) 60, 844
TspGWI ACGGA 1 cut(s) 918
TspRI CASTG 2 cut(s) 159, 252
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 93
XceI RCATGY 2 cut(s) 19, 556
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 385
XspI CTAG 3 cut(s) 774, 810, 915
Zsp2I ATGCAT 2 cut(s) 554, 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.