Rh7BG323200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010894
Physical Location & Seq
Forward (+)
31725405 .. 31728937
3533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG323200.1

Sequence Viewer

Length: 1206 bp
ATGCCCCAGACGAGAATTGCTGCCGATACACTCGGTGTGTTGACCGTATGTCTAGTTGCTCTCTTGATCCTTCTGGGTGTCCTCTGCATCACCTACATGTTTTACTTTCGCTGTCGTATTCGTAGTCAGGGTTTTGTTCAACTCAGTTATTTCAGTGGCCCTTGGATAATCCGAATAACTTTCATTTTGTTTGCAATCTGGTGGGGAATTGGTGAAATTATCCGGTTAAGTTTGTTGAGACGGGAAGGAAGACTGTTGAATACCCTTAACTTGAAATGGCAGGAGACTGTCTGCAAATGCTATATTGTCTCAAACCTGGGGTTTGCAGAACCTTGCCTATTCCTGACCCTTGTGTTCCTACTTCGTGCTCCTTTGCATACAATGGAGTCAGGTATTCTAAGCCGACAATGGAATGGGAAAACAGCTGGTTACATTCTTTTCTACTGCCTCCCAATGGTTCTTCTACAGCTCGTTGTCATAGTAATTGGACCCACTCTGAACAGTAATCATGAGTTGCCTCCCTACTTTACCATTACCAGTTCAATGAACAAGAGTTCAATGAACAAGACTGATCAGATTGTCCTCTGCACTTACCCTTTACTGAGTACATTACTTCTTGGGATTTTTGCCATCATTCTAACTGCCTATGTGTTTTGGCTTGGAAGGCAGATTTTAAAGATGGTCATCAATAAGGGTCTGCAGAAAAGAGTTTATACATTGATATTCTCAGTTTCAAGTTTCCTTCCATTGAGGGTTACTTTGCTTAGCTTCTCTGTTTTATCTAAACCAGAGCACTTTCAGTTTGAAGCTCTTGCTTTCTTGGCTTTTCTTGCCCTTTTATGTTGTGCGGGTGTGTGTATATGCATGCTTGTTTACTGCCCGGTTGCGGATTCTTTAGCGCTGGGGAGTTTACAGGACTTGGAGGGTAGGAGGAGACTTGATGATGGTCAAAATGACACCATTTCTCTTATTGCTAACCAGAGTCATATGGAAGAAAGTGCTGGATTTAGTCCCAGTAGAAGCTCTGATGTGTCAACCAAGCAGCGCGGATCAATTTCTTTCCGTGCTTTGGGAAAGGAGGATGGTTCTTCTAGGGGACCATTTGTGGAATTGAGCCTCTTCTCTCCTAGTGAAGATGCAACACCCCCAGAATCACCTCCGCTTCTTGGCTGGCCTATGCGTCCCTCTCCTTCACCTCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

44.82

Weight (kDa)

8.87

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57680 AT1G57680 AT1G57680
fragaria_vesca FvH4_5g28140 FvH4_5g28140
malus_domestica MD08G1245000.v1.1 MD15G1440100.v1.1
prunus_persica Prupe.1G582400_v2.0.a1
pyrus_communis pycom08g21250 pycom15g38800
rosa_chinensis RchiOBHm_Chr7g0220291
rosa_laevigata RLG00000002242
rosa_multiflora Rmu_sc0001136.1_g000030
rosa_roxburghii Rroxscaffold_3G00239640
rosa_rugosa Rorug07G0191900.1
rosa_samantha Rh7AG333900 Rh7BG323200 Rh7CG351600 Rh7DG330200
rosa_wichuraiana Rw7G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1047
AciI CCGC 4 cut(s) 848, 887, 1047, 1160
AclWI GGATC 2 cut(s) 61, 1057
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 1 cut(s) 607
AfeI AGCGCT 1 cut(s) 900
AfiI CCNNNNNNNGG 4 cut(s) 454, 886, 1069, 1166
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 7 cut(s) 140, 259, 274, 543, 558, 735, 806
AhdI GACNNNNNGTC 1 cut(s) 48
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 5 cut(s) 425, 469, 768, 809, 1023
AluI AGCT 5 cut(s) 425, 469, 768, 809, 1023
Alw21I GWGCWC 2 cut(s) 370, 795
Alw26I GTCTC 4 cut(s) 232, 278, 313, 928
AlwI GGATC 2 cut(s) 61, 1057
Aor51HI AGCGCT 1 cut(s) 900
AoxI GGCC 2 cut(s) 157, 1172
ApeKI GCWGC 2 cut(s) 20, 1042
AspLEI GCGC 2 cut(s) 901, 1047
AspS9I GGNCC 3 cut(s) 158, 488, 1097
AsuC2I CCSGG 1 cut(s) 881
AsuHPI GGTGA 5 cut(s) 82, 224, 1146, 1185, 1190
AvaII GGWCC 2 cut(s) 488, 1097
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 370, 795
BbvI GCAGC 2 cut(s) 7, 1054
BccI CCATC 4 cut(s) 638, 673, 938, 1076
BciT130I CCWGG 1 cut(s) 317
BclI TGATCA 1 cut(s) 571
BcnI CCSGG 1 cut(s) 881
BcoDI GTCTC 4 cut(s) 232, 278, 313, 928
BfaI CTAG 3 cut(s) 53, 1092, 1128
BfmI CTRYAG 2 cut(s) 464, 698
BfoI RGCGCY 1 cut(s) 902
BisI GCNGC 2 cut(s) 21, 1043
BlpI GCTNAGC 1 cut(s) 764
BlsI GCNGC 2 cut(s) 22, 1044
Bme1390I CCNGG 2 cut(s) 317, 881
Bme18I GGWCC 2 cut(s) 488, 1097
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgT120I GGNCC 3 cut(s) 158, 488, 1097
BmiI GGNNCC 2 cut(s) 490, 1098
BmrFI CCNGG 2 cut(s) 317, 881
BmrI ACTGGG 1 cut(s) 1008
BmsI GCATC 2 cut(s) 96, 1126
BmuI ACTGGG 1 cut(s) 1008
BpiI GAAGAC 1 cut(s) 256
Bpu1102I GCTNAGC 1 cut(s) 764
BpuMI CCSGG 1 cut(s) 881
BsaBI GATNNNNATC 1 cut(s) 683
BsaJI CCNNGG 2 cut(s) 161, 316
BsaWI WCCGGW 1 cut(s) 222
Bsc4I CCNNNNNNNGG 4 cut(s) 454, 886, 1069, 1166
Bse1I ACTGG 3 cut(s) 537, 1014, 1201
Bse8I GATNNNNATC 1 cut(s) 683
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 161, 316
BseGI GGATG 1 cut(s) 1087
BseJI GATNNNNATC 1 cut(s) 683
BseLI CCNNNNNNNGG 4 cut(s) 454, 886, 1069, 1166
BseMII CTCAG 3 cut(s) 157, 593, 741
BseNI ACTGG 3 cut(s) 537, 1014, 1201
BseRI GAGGAG 1 cut(s) 946
BseXI GCAGC 2 cut(s) 7, 1054
BseYI CCCAGC 1 cut(s) 901
BsgI GTGCAG 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 1047
BshFI GGCC 2 cut(s) 159, 1174
BsiHKAI GWGCWC 2 cut(s) 370, 795
BsiSI CCGG 2 cut(s) 223, 881
BslFI GGGAC 3 cut(s) 996, 1110, 1167
BslI CCNNNNNNNGG 4 cut(s) 454, 886, 1069, 1166
BsmAI GTCTC 4 cut(s) 232, 278, 313, 928
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 3 cut(s) 996, 1110, 1167
BsnI GGCC 2 cut(s) 159, 1174
Bsp1286I GDGCHC 2 cut(s) 370, 795
Bsp143I GATC 3 cut(s) 66, 571, 1049
Bsp1720I GCTNAGC 1 cut(s) 764
BspACI CCGC 4 cut(s) 848, 887, 1047, 1160
BspANI GGCC 2 cut(s) 159, 1174
BspCNI CTCAG 3 cut(s) 156, 594, 740
BspFNI CGCG 1 cut(s) 1047
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 490, 1098
BspMAI CTGCAG 1 cut(s) 702
BspPI GGATC 2 cut(s) 61, 1057
BsrI ACTGG 3 cut(s) 537, 1014, 1201
BssECI CCNNGG 2 cut(s) 161, 316
BssMI GATC 3 cut(s) 66, 571, 1049
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 4 cut(s) 46, 255, 289, 503
Bst6I CTCTTC 1 cut(s) 1124
BstC8I GCNNGC 2 cut(s) 866, 1172
BstDEI CTNAG 5 cut(s) 143, 398, 602, 727, 764
BstF5I GGATG 1 cut(s) 1087
BstFNI CGCG 1 cut(s) 1047
BstH2I RGCGCY 1 cut(s) 902
BstHHI GCGC 2 cut(s) 901, 1047
BstKTI GATC 3 cut(s) 69, 574, 1052
BstMAI GTCTC 4 cut(s) 232, 278, 313, 928
BstMBI GATC 3 cut(s) 66, 571, 1049
BstMWI GCNNNNNNNGC 3 cut(s) 664, 821, 830
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 2 cut(s) 100, 868
BstSCI CCNGG 2 cut(s) 315, 879
BstSFI CTRYAG 2 cut(s) 464, 698
BstUI CGCG 1 cut(s) 1047
BstV1I GCAGC 2 cut(s) 7, 1054
BstV2I GAAGAC 1 cut(s) 256
BsuRI GGCC 2 cut(s) 159, 1174
BtsCI GGATG 1 cut(s) 1087
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 866, 1172
CciI TCATGA 1 cut(s) 508
CfoI GCGC 2 cut(s) 901, 1047
Cfr13I GGNCC 3 cut(s) 158, 488, 1097
CseI GACGC 1 cut(s) 1169
Csp6I GTAC 1 cut(s) 606
CviAII CATG 3 cut(s) 97, 509, 865
CviQI GTAC 1 cut(s) 606
DdeI CTNAG 5 cut(s) 143, 398, 602, 727, 764
DpnI GATC 3 cut(s) 68, 573, 1051
DpnII GATC 3 cut(s) 66, 571, 1049
DraI TTTAAA 1 cut(s) 675
DraIII CACNNNGTG 1 cut(s) 35
DriI GACNNNNNGTC 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 1124
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 1124
Eco130I CCWWGG 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 488, 1097
Eco47III AGCGCT 1 cut(s) 900
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 866
ErhI CCWWGG 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 3 cut(s) 100, 512, 868
FaqI GGGAC 3 cut(s) 996, 1110, 1167
FatI CATG 3 cut(s) 96, 508, 864
FauI CCCGC 1 cut(s) 841
FauNDI CATATG 1 cut(s) 987
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 2 cut(s) 21, 1043
FokI GGATG 1 cut(s) 1094
Fsp4HI GCNGC 2 cut(s) 21, 1043
FspBI CTAG 3 cut(s) 53, 1092, 1128
GlaI GCGC 2 cut(s) 900, 1046
GluI GCNGC 2 cut(s) 21, 1043
GsaI CCCAGC 1 cut(s) 905
HaeII RGCGCY 1 cut(s) 902
HaeIII GGCC 2 cut(s) 159, 1174
HapII CCGG 2 cut(s) 223, 881
HgaI GACGC 1 cut(s) 1169
HhaI GCGC 2 cut(s) 901, 1047
Hin1II CATG 3 cut(s) 100, 512, 868
Hin6I GCGC 2 cut(s) 899, 1045
HinP1I GCGC 2 cut(s) 899, 1045
HincII GTYRAC 2 cut(s) 42, 1035
HindII GTYRAC 2 cut(s) 42, 1035
HinfI GANTC 4 cut(s) 386, 890, 982, 1151
HpaII CCGG 2 cut(s) 223, 881
HphI GGTGA 5 cut(s) 82, 224, 1146, 1185, 1190
Hpy166II GTNNAC 4 cut(s) 42, 874, 911, 1035
Hpy188I TCNGA 4 cut(s) 173, 498, 576, 1027
Hpy188III TCNNGA 3 cut(s) 64, 343, 509
Hpy8I GTNNAC 4 cut(s) 42, 874, 911, 1035
HpyAV CCTTC 5 cut(s) 80, 239, 657, 752, 1200
HpyCH4III ACNGT 4 cut(s) 46, 255, 289, 503
HpyCH4V TGCA 9 cut(s) 87, 194, 294, 326, 376, 588, 700, 864, 1139
HpyF10VI GCNNNNNNNGC 3 cut(s) 664, 821, 830
HpyF3I CTNAG 5 cut(s) 143, 398, 602, 727, 764
Hsp92II CATG 3 cut(s) 100, 512, 868
HspAI GCGC 2 cut(s) 899, 1045
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 3 cut(s) 66, 571, 1049
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 2 cut(s) 7, 1054
LweI GCATC 2 cut(s) 96, 1126
MaeI CTAG 3 cut(s) 53, 1092, 1128
MaeIII GTNAC 2 cut(s) 428, 754
MalI GATC 3 cut(s) 68, 573, 1051
MboI GATC 3 cut(s) 66, 571, 1049
MboII GAAGA 6 cut(s) 261, 452, 1004, 1080, 1111, 1145
MhlI GDGCHC 2 cut(s) 370, 795
MluCI AATT 6 cut(s) 15, 207, 216, 483, 1053, 1109
MlyI GAGTC 2 cut(s) 395, 991
Mph1103I ATGCAT 1 cut(s) 866
MseI TTAA 3 cut(s) 227, 267, 674
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 223, 881
MspR9I CCNGG 2 cut(s) 317, 881
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 1047
MwoI GCNNNNNNNGC 3 cut(s) 664, 821, 830
NciI CCSGG 1 cut(s) 881
NdeI CATATG 1 cut(s) 987
NdeII GATC 3 cut(s) 66, 571, 1049
NlaIII CATG 3 cut(s) 100, 512, 868
NlaIV GGNNCC 2 cut(s) 490, 1098
NsiI ATGCAT 1 cut(s) 866
NspI RCATGY 2 cut(s) 100, 868
PaeI GCATGC 1 cut(s) 868
PagI TCATGA 1 cut(s) 508
PciI ACATGT 1 cut(s) 96
PfeI GAWTC 2 cut(s) 890, 1151
PkrI GCNGC 2 cut(s) 22, 1044
PleI GAGTC 2 cut(s) 394, 990
PpsI GAGTC 2 cut(s) 394, 990
PscI ACATGT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 901
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 2 cut(s) 490, 1098
PspPI GGNCC 3 cut(s) 158, 488, 1097
PstI CTGCAG 1 cut(s) 702
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 3 cut(s) 227, 267, 674
SatI GCNGC 2 cut(s) 21, 1043
Sau3AI GATC 3 cut(s) 66, 571, 1049
Sau96I GGNCC 3 cut(s) 158, 488, 1097
SchI GAGTC 2 cut(s) 395, 991
ScrFI CCNGG 2 cut(s) 317, 881
SduI GDGCHC 2 cut(s) 370, 795
SfaNI GCATC 2 cut(s) 96, 1126
SfcI CTRYAG 2 cut(s) 464, 698
SinI GGWCC 2 cut(s) 488, 1097
SmiMI CAYNNNNRTG 1 cut(s) 95
SphI GCATGC 1 cut(s) 868
Sse9I AATT 6 cut(s) 15, 207, 216, 483, 1053, 1109
SsiI CCGC 4 cut(s) 848, 887, 1047, 1160
SspMI CTAG 3 cut(s) 53, 1092, 1128
StyD4I CCNGG 2 cut(s) 315, 879
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 4 cut(s) 46, 255, 289, 503
TasI AATT 6 cut(s) 15, 207, 216, 483, 1053, 1109
TatI WGTACW 1 cut(s) 605
TfiI GAWTC 2 cut(s) 890, 1151
Tru1I TTAA 3 cut(s) 227, 267, 674
Tru9I TTAA 3 cut(s) 227, 267, 674
TscAI CASTG 1 cut(s) 160
TseI GCWGC 2 cut(s) 20, 1042
TspDTI ATGAA 3 cut(s) 172, 560, 575
TspGWI ACGGA 1 cut(s) 1052
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 2 cut(s) 488, 1097
XceI RCATGY 2 cut(s) 100, 868
XspI CTAG 3 cut(s) 53, 1092, 1128
Zsp2I ATGCAT 1 cut(s) 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.