Prupe.1G582400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010894
Physical Location & Seq
Forward (+)
47309799 .. 47313148
3350 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G582400.1

Sequence Viewer

Length: 1224 bp
ATGCCCCTGACGAGCTTTGCTGCCGATACACTCGGTGTGTTGACCATATGTCTAGTTGCTCTCTTGATCCTTCTTGGTTTCCTCTGCATTATTTACTTGTTTTACTTTCGCTCTCGCATTCGTAGCCAGGGTTTTATTCAACTTAGTTATTTCAGTGGCCCGTGGATTATCCGAATCACTTTCATCTTGTTTGCAATCTGGTGGGGTTTTGGTGAAATTGCCCGTTTAAGTCTGTTGAGACGTGAAGGGAGACTACTGAATACCCTTAACTCGAAATGGCAGGAGAATCTTTGCAAATGTTACATAGTCTCAAACCTGGGGTTTGCAGAACCATGTCTATTTCTGACCCTCGTGTTCCTACTTCGTGCGCCCTTGCAGACAATGGAGTCAGGAATTCTAAGCCGAGAGGGGAATGGGAAAACAGCTGGTTACGTTCTTTTCTACTGCCTCCCAATGCTTGTTCTTCAGCTCTTTGTTATTTTAATTGGACCCGAGCTCCACAAGAATGAAAGTTTACGCAAATTGCCTTCCTATTTCACAAGTACAGTGAACAAGACTGATCACATTGCCCTCTGCACTTACCCTTTACTGAGTACTATCCTCCTTGGGATTTTTGGCATCATTCTAACTGCCTACTTGTTTTGGCTTGGAAGGCAGATTTTAAAATTGGTCATCAATAAGGGTCTGCAGAAGAGGGTTTACACATTGATATTCTCAGTTTCAAGTTTCCTTCCGTTAAGGGTTACTTTGCTTGGTTTCTCTGTTTTATCTAAACCAGAGCACATTCAGTTTGAAGTTCTTTCTTTCTTGGCTTTTCTTGCACTTTTATGTTGTGCCGGGGTGTGTATATGCATGCTTGTTTACTGCCCAGTTGCGGATTCTTTAGCCCTGGGGAGTCTACAGGACTTGGAGAGTAGGAGGAGAGTTAATGATGATCAAAATGACACCATTTCTCTTATTGCTAACCAGAGTCATATGGAAGAAAGTTCTGGAATCAGCCCTAGTAGAAACTCTGATGTATCAGCAAAGCGTGGATCAATTTCTTTTCGTACTTTAGAAAAGGAGGAGGGTTCTTCTAGGATACCCTTTGTAGAACTGAGCCTCTTCTCTCCCAGTCGAGATGCAACACCCCCGGAATCACCTCCCCTCCTTGGCTGGCCAATGCGTCCCCTTCCATCATCTCACTCACCCGTAGTTCAAATTCATGGAACCACAGATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

408

Amino Acids

45.62

Weight (kDa)

8.9

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57680 AT1G57680 AT1G57680
fragaria_vesca FvH4_5g28140 FvH4_5g28140
malus_domestica MD08G1245000.v1.1 MD15G1440100.v1.1
prunus_persica Prupe.1G582400_v2.0.a1
pyrus_communis pycom08g21250 pycom15g38800
rosa_chinensis RchiOBHm_Chr7g0220291
rosa_laevigata RLG00000002242
rosa_multiflora Rmu_sc0001136.1_g000030
rosa_roxburghii Rroxscaffold_3G00239640
rosa_rugosa Rorug07G0191900.1
rosa_samantha Rh7AG333900 Rh7BG323200 Rh7CG351600 Rh7DG330200
rosa_wichuraiana Rw7G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 385
AccI GTMKAC 1 cut(s) 898
AciI CCGC 1 cut(s) 875
AclWI GGATC 2 cut(s) 61, 1042
AcoI YGGCCR 1 cut(s) 1157
AcsI RAATTY 2 cut(s) 393, 1200
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 3 cut(s) 544, 595, 1051
AfiI CCNNNNNNNGG 2 cut(s) 874, 1151
AgsI TTSAA 4 cut(s) 140, 723, 794, 1199
AhdI GACNNNNNGTC 1 cut(s) 48
AjiI CACGTC 1 cut(s) 242
AjnI CCWGG 3 cut(s) 126, 315, 888
AluBI AGCT 4 cut(s) 15, 425, 469, 496
AluI AGCT 4 cut(s) 15, 425, 469, 496
Alw21I GWGCWC 2 cut(s) 498, 783
Alw26I GTCTC 3 cut(s) 232, 244, 313
AlwI GGATC 2 cut(s) 61, 1042
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 2 cut(s) 157, 1157
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 2 cut(s) 393, 1200
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 2 cut(s) 158, 488
AsuC2I CCSGG 2 cut(s) 838, 1133
AsuHPI GGTGA 3 cut(s) 224, 1131, 1179
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 1 cut(s) 488
BalI TGGCCA 1 cut(s) 1159
BanII GRGCYC 1 cut(s) 498
BarI GAAGNNNNNNTAC 4 cut(s) 237, 269, 683, 715
BauI CACGAG 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 498, 783
BbvI GCAGC 1 cut(s) 7
BccI CCATC 1 cut(s) 1183
BciT130I CCWGG 3 cut(s) 128, 317, 890
BciVI GTATCC 1 cut(s) 1074
BclI TGATCA 2 cut(s) 559, 934
BcnI CCSGG 2 cut(s) 838, 1133
BcoDI GTCTC 3 cut(s) 232, 244, 313
BfaI CTAG 3 cut(s) 53, 1002, 1077
BfmI CTRYAG 2 cut(s) 686, 899
BfuI GTATCC 1 cut(s) 1074
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 5 cut(s) 128, 317, 838, 890, 1133
Bme18I GGWCC 1 cut(s) 488
BmeRI GACNNNNNGTC 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 491
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 158, 488
BmiI GGNNCC 2 cut(s) 490, 1210
BmrFI CCNGG 5 cut(s) 128, 317, 838, 890, 1133
BmrI ACTGGG 2 cut(s) 863, 1107
BmsI GCATC 2 cut(s) 627, 1111
BmuI ACTGGG 2 cut(s) 863, 1107
BpuMI CCSGG 2 cut(s) 838, 1133
BsaJI CCNNGG 9 cut(s) 127, 161, 316, 604, 837, 888, 889, 1131, 1150
BsaXI ACNNNNNCTCC 4 cut(s) 480, 510, 1131, 1161
Bsc4I CCNNNNNNNGG 2 cut(s) 874, 1151
Bse1I ACTGG 2 cut(s) 869, 1113
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 3 cut(s) 128, 317, 890
BseDI CCNNGG 9 cut(s) 127, 161, 316, 604, 837, 888, 889, 1131, 1150
BseLI CCNNNNNNNGG 2 cut(s) 874, 1151
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 3 cut(s) 581, 729, 1088
BseNI ACTGG 2 cut(s) 869, 1113
BseRI GAGGAG 2 cut(s) 934, 1079
BseXI GCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 559
BshFI GGCC 2 cut(s) 159, 1159
BsiHKAI GWGCWC 2 cut(s) 498, 783
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 2 cut(s) 837, 1133
BslFI GGGAC 1 cut(s) 1152
BslI CCNNNNNNNGG 2 cut(s) 874, 1151
BsmAI GTCTC 3 cut(s) 232, 244, 313
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 1152
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 2 cut(s) 159, 1159
BsoBI CYCGRG 1 cut(s) 491
Bsp1286I GDGCHC 2 cut(s) 498, 783
Bsp143I GATC 4 cut(s) 66, 559, 934, 1034
BspACI CCGC 1 cut(s) 875
BspANI GGCC 2 cut(s) 159, 1159
BspCNI CTCAG 3 cut(s) 582, 728, 1089
BspLI GGNNCC 2 cut(s) 490, 1210
BspMAI CTGCAG 1 cut(s) 690
BspPI GGATC 2 cut(s) 61, 1042
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 2 cut(s) 869, 1113
BssECI CCNNGG 9 cut(s) 127, 161, 316, 604, 837, 888, 889, 1131, 1150
BssMI GATC 4 cut(s) 66, 559, 934, 1034
BssSI CACGAG 1 cut(s) 350
BssT1I CCWWGG 2 cut(s) 604, 1150
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 3 cut(s) 128, 317, 890
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 2 cut(s) 686, 1109
BstC8I GCNNGC 2 cut(s) 854, 1157
BstDEI CTNAG 5 cut(s) 143, 398, 590, 715, 1097
BstDSI CCRYGG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 4 cut(s) 69, 562, 937, 1037
BstMAI GTCTC 3 cut(s) 232, 244, 313
BstMBI GATC 4 cut(s) 66, 559, 934, 1034
BstMWI GCNNNNNNNGC 3 cut(s) 123, 652, 818
BstNI CCWGG 3 cut(s) 128, 317, 890
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 5 cut(s) 126, 315, 836, 888, 1131
BstSFI CTRYAG 2 cut(s) 686, 899
BstV1I GCAGC 1 cut(s) 7
BsuI GTATCC 1 cut(s) 1074
BsuRI GGCC 2 cut(s) 159, 1159
BtgI CCRYGG 1 cut(s) 161
BtrI CACGTC 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 160, 552
Cac8I GCNNGC 2 cut(s) 854, 1157
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 158, 488
CseI GACGC 1 cut(s) 1154
Csp6I GTAC 3 cut(s) 543, 594, 1050
CviAII CATG 3 cut(s) 333, 853, 1205
CviQI GTAC 3 cut(s) 543, 594, 1050
DdeI CTNAG 5 cut(s) 143, 398, 590, 715, 1097
DpnI GATC 4 cut(s) 68, 561, 936, 1036
DpnII GATC 4 cut(s) 66, 559, 934, 1034
DraI TTTAAA 1 cut(s) 663
DraIII CACNNNGTG 1 cut(s) 35
DrdI GACNNNNNNGTC 1 cut(s) 385
DriI GACNNNNNGTC 1 cut(s) 48
DseDI GACNNNNNNGTC 1 cut(s) 385
EaeI YGGCCR 1 cut(s) 1157
Eam1104I CTCTTC 2 cut(s) 686, 1109
Eam1105I GACNNNNNGTC 1 cut(s) 48
EarI CTCTTC 2 cut(s) 686, 1109
Ecl136II GAGCTC 1 cut(s) 496
Eco130I CCWWGG 2 cut(s) 604, 1150
Eco24I GRGCYC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 488
Eco53kI GAGCTC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 491
EcoICRI GAGCTC 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 3 cut(s) 126, 315, 888
EcoT14I CCWWGG 2 cut(s) 604, 1150
EcoT22I ATGCAT 1 cut(s) 854
EcoT38I GRGCYC 1 cut(s) 498
ErhI CCWWGG 2 cut(s) 604, 1150
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 3 cut(s) 336, 856, 1208
FalI AAGNNNNNCTT 2 cut(s) 730, 762
FaqI GGGAC 1 cut(s) 1152
FatI CATG 3 cut(s) 332, 852, 1204
FauNDI CATATG 2 cut(s) 47, 975
FbaI TGATCA 2 cut(s) 559, 934
FblI GTMKAC 1 cut(s) 898
Fnu4HI GCNGC 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 3 cut(s) 53, 1002, 1077
GlaI GCGC 1 cut(s) 369
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 159, 1159
HapII CCGG 2 cut(s) 837, 1133
HgaI GACGC 1 cut(s) 1154
HhaI GCGC 1 cut(s) 370
Hin1II CATG 3 cut(s) 336, 856, 1208
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 8 cut(s) 174, 286, 386, 878, 895, 970, 993, 1136
HpaII CCGG 2 cut(s) 837, 1133
HphI GGTGA 3 cut(s) 224, 1131, 1179
Hpy166II GTNNAC 6 cut(s) 42, 515, 550, 700, 862, 899
Hpy188I TCNGA 3 cut(s) 173, 345, 1015
Hpy188III TCNNGA 4 cut(s) 64, 390, 990, 1118
Hpy8I GTNNAC 6 cut(s) 42, 515, 550, 700, 862, 899
HpyAV CCTTC 6 cut(s) 80, 239, 537, 645, 740, 1181
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 2 cut(s) 241, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 652, 818
HpyF3I CTNAG 5 cut(s) 143, 398, 590, 715, 1097
HpySE526I ACGT 2 cut(s) 241, 432
Hsp92II CATG 3 cut(s) 336, 856, 1208
HspAI GCGC 1 cut(s) 368
Ksp22I TGATCA 2 cut(s) 559, 934
Kzo9I GATC 4 cut(s) 66, 559, 934, 1034
LmnI GCTCC 1 cut(s) 501
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 2 cut(s) 627, 1111
MaeI CTAG 3 cut(s) 53, 1002, 1077
MaeII ACGT 2 cut(s) 241, 432
MaeIII GTNAC 3 cut(s) 299, 428, 742
MalI GATC 4 cut(s) 68, 561, 936, 1036
MboI GATC 4 cut(s) 66, 559, 934, 1034
MboII GAAGA 5 cut(s) 455, 703, 992, 1065, 1096
MhlI GDGCHC 2 cut(s) 498, 783
MlsI TGGCCA 1 cut(s) 1159
MluCI AATT 7 cut(s) 216, 393, 483, 521, 665, 1038, 1200
MluNI TGGCCA 1 cut(s) 1159
MlyI GAGTC 3 cut(s) 395, 904, 979
Mox20I TGGCCA 1 cut(s) 1159
Mph1103I ATGCAT 1 cut(s) 854
MscI TGGCCA 1 cut(s) 1159
MseI TTAA 6 cut(s) 227, 267, 482, 662, 737, 927
MslI CAYNNNNRTG 2 cut(s) 504, 826
Msp20I TGGCCA 1 cut(s) 1159
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 837, 1133
MspR9I CCNGG 5 cut(s) 128, 317, 838, 890, 1133
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 3 cut(s) 128, 317, 890
MwoI GCNNNNNNNGC 3 cut(s) 123, 652, 818
NciI CCSGG 2 cut(s) 838, 1133
NdeI CATATG 2 cut(s) 47, 975
NdeII GATC 4 cut(s) 66, 559, 934, 1034
NlaIII CATG 3 cut(s) 336, 856, 1208
NlaIV GGNNCC 2 cut(s) 490, 1210
NmeAIII GCCGAG 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 854
NspI RCATGY 1 cut(s) 856
PaeI GCATGC 1 cut(s) 856
PasI CCCWGGG 1 cut(s) 889
PctI GAATGC 1 cut(s) 117
PfeI GAWTC 5 cut(s) 174, 286, 878, 993, 1136
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 3 cut(s) 394, 903, 978
PpsI GAGTC 3 cut(s) 394, 903, 978
Psp124BI GAGCTC 1 cut(s) 498
Psp6I CCWGG 3 cut(s) 126, 315, 888
PspGI CCWGG 3 cut(s) 126, 315, 888
PspN4I GGNNCC 2 cut(s) 490, 1210
PspPI GGNCC 2 cut(s) 158, 488
PstI CTGCAG 1 cut(s) 690
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 3 cut(s) 544, 595, 1051
RsaNI GTAC 3 cut(s) 543, 594, 1050
RseI CAYNNNNRTG 2 cut(s) 504, 826
SacI GAGCTC 1 cut(s) 498
SaqAI TTAA 6 cut(s) 227, 267, 482, 662, 737, 927
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 4 cut(s) 66, 559, 934, 1034
Sau96I GGNCC 2 cut(s) 158, 488
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 3 cut(s) 395, 904, 979
ScrFI CCNGG 5 cut(s) 128, 317, 838, 890, 1133
SduI GDGCHC 2 cut(s) 498, 783
SetI ASST 8 cut(s) 17, 244, 318, 427, 435, 471, 498, 1144
SfaNI GCATC 2 cut(s) 627, 1111
SfcI CTRYAG 2 cut(s) 686, 899
SinI GGWCC 1 cut(s) 488
SmiMI CAYNNNNRTG 2 cut(s) 504, 826
SphI GCATGC 1 cut(s) 856
Sse9I AATT 7 cut(s) 216, 393, 483, 521, 665, 1038, 1200
SsiI CCGC 1 cut(s) 875
SspMI CTAG 3 cut(s) 53, 1002, 1077
SstI GAGCTC 1 cut(s) 498
StyD4I CCNGG 5 cut(s) 126, 315, 836, 888, 1131
StyI CCWWGG 2 cut(s) 604, 1150
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 2 cut(s) 244, 435
TaqI TCGA 2 cut(s) 272, 1117
TasI AATT 7 cut(s) 216, 393, 483, 521, 665, 1038, 1200
TatI WGTACW 2 cut(s) 542, 593
TfiI GAWTC 5 cut(s) 174, 286, 878, 993, 1136
Tru1I TTAA 6 cut(s) 227, 267, 482, 662, 737, 927
Tru9I TTAA 6 cut(s) 227, 267, 482, 662, 737, 927
TscAI CASTG 2 cut(s) 160, 552
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 172, 522, 1193
TspGWI ACGGA 1 cut(s) 723
TspRI CASTG 2 cut(s) 160, 552
VpaK11BI GGWCC 1 cut(s) 488
XapI RAATTY 2 cut(s) 393, 1200
XceI RCATGY 1 cut(s) 856
XmiI GTMKAC 1 cut(s) 898
XspI CTAG 3 cut(s) 53, 1002, 1077
ZrmI AGTACT 1 cut(s) 595
Zsp2I ATGCAT 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.