RLG00000002242

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010894
Physical Location & Seq
Forward (+)
30404153 .. 30406752
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002242

Sequence Viewer

Length: 1452 bp
ATGATGAAAGAAAATAAGAAAACAAGCTGGCCATCATCAGACAAACAACTCCCTATCGCCCAAAAAACAGCACAGAAGGAGAAAAAAGAAAACCCACCATCACGATTCTCGGCTTTTTGGCTGGGTAACATAATCAACTTGAGAGTCCAATCATTCTACAGTTATTGGCAGTTCTTTCCTCTTGATTCTGGAAAGGAAGCGTTTACGCTACCCGAGGATCTTTTGTATCCATGCTGGCAGAGAGCATGCGTGGAATCTGTGCTTCGGGTAATGCCCCAGACGAGAATTGCTGCCGATACACTCGGTGTGTTGACCGTATGTCTAGTTGCTCTCTTGATCCTTCTGGGTGTCCTCTGCATTATCTACTTGTTTTACTTTCGCTGTCGTATTCGTAGTCAGGATTTTGTTCAACTCAGTTATTTCAGTGGCCCTTGGATAATCCGAATAACTTTCATCTTGTTTGCAATCTGGTGGGGAATTGGTGAAATTATCCGGTTAAGTTTGTTGAGACGGGAAGGAAGACTGTTGAATAACCTTAACTTGAAATGGCAGGAGACTGTCTGCAAATGCTATATTGTCTCAAACCTGGGGTTTGCAGAACCTTGCCTATTCCTGACCCTTGTGTTCCTACTTCGTGCTCCTTTGCATACAATGGAGTCGGGTATTCTAAGCCGACAATGGAATGGGAAAACAGCTGGTTACGTTCTTTTCTACTGCCTCCCAATGGTTCTTCTTCAGCTCGTTGTCATAGTAATTGGACCCACGTTGAACAATATTGAGTTGCCTTCCTACTTTACCAGTACAATGAGCAAGACCGATCAGATTGTCCTCTGCACTTACCCTTTACTGAGTACGTTACTGCTTGGGATTTTTGCCATCATTCTAACTGCCTACGTGTTTTGGCTTGGAAGGCAGATTTTAAAGATGGTCATCAATAAGGGTCTGCAGAAAAGAGTTTATACATTGATATTCTCAGTTTCAAGTTTCCTTCCATTGAGGGTTACTTTGCTTGGCTTCTCTGTTTTATCTAAACCAGAGCACTTTCAGTTTGAAGCTCTTGCTTTTGTGGCTTTTCTTGCCCTTTTATGTTGTGCGGGTGTGTGTATATGCATGCTTGTTTACTGCCCGGTTGCGGATTCTTTAGCGCTGGGGAGTTTACAGGACTTGGAGGGTAGGAGGAGACTTGATGATGGTCAAAATGACACCATTTCTCTTATTGCTAACCAGAGTCATATGGAAGAAAGTGCTGGATTTAGTCCCAGTAGAAGCTCTGATGTGTCAACCAAGCAGCGCAGATCAATTTCTTTCCGTGCTTTGGGAAAGGAGGATGGTTCATCTAGGGGACCATTTGTGGAATTGAGCCTCTTCTCTCCTAGTGAAGATGCAACACCCCCAGAATCACCTCCGCTTCTTGGCTGGCCTATGCGTCCCTCTCCTTCACCTCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

484

Amino Acids

54.61

Weight (kDa)

8.97

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G57680 AT1G57680 AT1G57680
fragaria_vesca FvH4_5g28140 FvH4_5g28140
malus_domestica MD08G1245000.v1.1 MD15G1440100.v1.1
prunus_persica Prupe.1G582400_v2.0.a1
pyrus_communis pycom08g21250 pycom15g38800
rosa_chinensis RchiOBHm_Chr7g0220291
rosa_laevigata RLG00000002242
rosa_multiflora Rmu_sc0001136.1_g000030
rosa_roxburghii Rroxscaffold_3G00239640
rosa_rugosa Rorug07G0191900.1
rosa_samantha Rh7AG333900 Rh7BG323200 Rh7CG351600 Rh7DG330200
rosa_wichuraiana Rw7G028170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 1094, 1133, 1406
AclWI GGATC 2 cut(s) 225, 331
AcoI YGGCCR 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 719
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 2 cut(s) 802, 853
AfeI AGCGCT 1 cut(s) 1146
AfiI CCNNNNNNNGG 4 cut(s) 724, 1132, 1315, 1412
AflIII ACRYGT 1 cut(s) 894
AgsI TTSAA 6 cut(s) 410, 529, 544, 769, 981, 1052
AhdI GACNNNNNGTC 1 cut(s) 318
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 5 cut(s) 27, 695, 739, 1055, 1269
AluI AGCT 5 cut(s) 27, 695, 739, 1055, 1269
Alw21I GWGCWC 2 cut(s) 640, 1041
Alw26I GTCTC 4 cut(s) 502, 548, 583, 1174
AlwI GGATC 2 cut(s) 225, 331
Ama87I CYCGRG 1 cut(s) 212
Aor51HI AGCGCT 1 cut(s) 1146
AoxI GGCC 3 cut(s) 29, 427, 1418
ApeKI GCWGC 2 cut(s) 290, 1288
AspLEI GCGC 2 cut(s) 1147, 1293
AspS9I GGNCC 3 cut(s) 428, 758, 1343
AsuC2I CCSGG 1 cut(s) 1127
AsuHPI GGTGA 4 cut(s) 494, 1392, 1431, 1436
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 2 cut(s) 758, 1343
BalI TGGCCA 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 526
Bbv12I GWGCWC 2 cut(s) 640, 1041
BbvI GCAGC 2 cut(s) 277, 1300
BccI CCATC 6 cut(s) 40, 106, 884, 919, 1184, 1322
BciT130I CCWGG 1 cut(s) 587
BciVI GTATCC 1 cut(s) 237
BcnI CCSGG 1 cut(s) 1127
BcoDI GTCTC 4 cut(s) 502, 548, 583, 1174
BfaI CTAG 3 cut(s) 323, 1338, 1374
BfmI CTRYAG 2 cut(s) 157, 944
BfoI RGCGCY 1 cut(s) 1148
BfuI GTATCC 1 cut(s) 237
BisI GCNGC 2 cut(s) 291, 1289
BlsI GCNGC 2 cut(s) 292, 1290
Bme1390I CCNGG 2 cut(s) 587, 1127
Bme18I GGWCC 2 cut(s) 758, 1343
BmeRI GACNNNNNGTC 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 3 cut(s) 428, 758, 1343
BmiI GGNNCC 2 cut(s) 760, 1344
BmrFI CCNGG 2 cut(s) 587, 1127
BmrI ACTGGG 1 cut(s) 1254
BmsI GCATC 1 cut(s) 1372
BmuI ACTGGG 1 cut(s) 1254
BpiI GAAGAC 1 cut(s) 526
BpuEI CTTGAG 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 1127
BsaAI YACGTR 1 cut(s) 895
BsaBI GATNNNNATC 1 cut(s) 929
BsaJI CCNNGG 3 cut(s) 213, 431, 586
BsaWI WCCGGW 1 cut(s) 492
Bsc4I CCNNNNNNNGG 4 cut(s) 724, 1132, 1315, 1412
Bse1I ACTGG 3 cut(s) 798, 1260, 1447
Bse8I GATNNNNATC 1 cut(s) 929
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 3 cut(s) 213, 431, 586
BseGI GGATG 1 cut(s) 1333
BseJI GATNNNNATC 1 cut(s) 929
BseLI CCNNNNNNNGG 4 cut(s) 724, 1132, 1315, 1412
BseMII CTCAG 3 cut(s) 427, 839, 987
BseNI ACTGG 3 cut(s) 798, 1260, 1447
BseRI GAGGAG 1 cut(s) 1192
BseXI GCAGC 2 cut(s) 277, 1300
BseYI CCCAGC 2 cut(s) 121, 1147
BsgI GTGCAG 1 cut(s) 817
BshFI GGCC 3 cut(s) 31, 429, 1420
BsiHKAI GWGCWC 2 cut(s) 640, 1041
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 2 cut(s) 493, 1127
BslFI GGGAC 3 cut(s) 1242, 1356, 1413
BslI CCNNNNNNNGG 4 cut(s) 724, 1132, 1315, 1412
BsmAI GTCTC 4 cut(s) 502, 548, 583, 1174
BsmBI CGTCTC 1 cut(s) 502
BsmFI GGGAC 3 cut(s) 1242, 1356, 1413
BsnI GGCC 3 cut(s) 31, 429, 1420
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 640, 1041
Bsp143I GATC 4 cut(s) 217, 336, 817, 1295
BspACI CCGC 3 cut(s) 1094, 1133, 1406
BspANI GGCC 3 cut(s) 31, 429, 1420
BspCNI CTCAG 3 cut(s) 426, 840, 986
BspLI GGNNCC 2 cut(s) 760, 1344
BspMAI CTGCAG 1 cut(s) 948
BspPI GGATC 2 cut(s) 225, 331
BsrI ACTGG 3 cut(s) 798, 1260, 1447
BssECI CCNNGG 3 cut(s) 213, 431, 586
BssMI GATC 4 cut(s) 217, 336, 817, 1295
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 4 cut(s) 161, 316, 525, 559
Bst6I CTCTTC 1 cut(s) 1370
BstBAI YACGTR 1 cut(s) 895
BstC8I GCNNGC 5 cut(s) 29, 236, 247, 1112, 1418
BstDEI CTNAG 4 cut(s) 413, 668, 848, 973
BstF5I GGATG 1 cut(s) 1333
BstH2I RGCGCY 1 cut(s) 1148
BstHHI GCGC 2 cut(s) 1147, 1293
BstKTI GATC 4 cut(s) 220, 339, 820, 1298
BstMAI GTCTC 4 cut(s) 502, 548, 583, 1174
BstMBI GATC 4 cut(s) 217, 336, 817, 1295
BstMWI GCNNNNNNNGC 3 cut(s) 910, 1067, 1076
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 2 cut(s) 249, 1114
BstSCI CCNGG 2 cut(s) 585, 1125
BstSFI CTRYAG 2 cut(s) 157, 944
BstV1I GCAGC 2 cut(s) 277, 1300
BstV2I GAAGAC 1 cut(s) 526
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuI GTATCC 1 cut(s) 237
BsuRI GGCC 3 cut(s) 31, 429, 1420
BtsCI GGATG 1 cut(s) 1333
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 5 cut(s) 29, 236, 247, 1112, 1418
CfoI GCGC 2 cut(s) 1147, 1293
Cfr13I GGNCC 3 cut(s) 428, 758, 1343
CseI GACGC 1 cut(s) 1415
Csp6I GTAC 2 cut(s) 801, 852
CviAII CATG 3 cut(s) 231, 246, 1111
CviQI GTAC 2 cut(s) 801, 852
DdeI CTNAG 4 cut(s) 413, 668, 848, 973
DpnI GATC 4 cut(s) 219, 338, 819, 1297
DpnII GATC 4 cut(s) 217, 336, 817, 1295
DraI TTTAAA 1 cut(s) 921
DraIII CACNNNGTG 1 cut(s) 305
DriI GACNNNNNGTC 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 1370
Eam1105I GACNNNNNGTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 1370
Eco130I CCWWGG 1 cut(s) 431
Eco47I GGWCC 2 cut(s) 758, 1343
Eco47III AGCGCT 1 cut(s) 1146
Eco57I CTGAAG 1 cut(s) 719
Eco88I CYCGRG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 1112
ErhI CCWWGG 1 cut(s) 431
Esp3I CGTCTC 1 cut(s) 502
FaeI CATG 3 cut(s) 234, 249, 1114
FaqI GGGAC 3 cut(s) 1242, 1356, 1413
FatI CATG 3 cut(s) 230, 245, 1110
FauI CCCGC 1 cut(s) 1087
FauNDI CATATG 1 cut(s) 1233
Fnu4HI GCNGC 2 cut(s) 291, 1289
FokI GGATG 1 cut(s) 1340
Fsp4HI GCNGC 2 cut(s) 291, 1289
FspBI CTAG 3 cut(s) 323, 1338, 1374
GlaI GCGC 2 cut(s) 1146, 1292
GluI GCNGC 2 cut(s) 291, 1289
GsaI CCCAGC 2 cut(s) 125, 1151
HaeII RGCGCY 1 cut(s) 1148
HaeIII GGCC 3 cut(s) 31, 429, 1420
HapII CCGG 2 cut(s) 493, 1127
HgaI GACGC 1 cut(s) 1415
HhaI GCGC 2 cut(s) 1147, 1293
Hin1II CATG 3 cut(s) 234, 249, 1114
Hin6I GCGC 2 cut(s) 1145, 1291
HinP1I GCGC 2 cut(s) 1145, 1291
HincII GTYRAC 2 cut(s) 312, 1281
HindII GTYRAC 2 cut(s) 312, 1281
HinfI GANTC 8 cut(s) 105, 144, 185, 254, 656, 1136, 1228, 1397
HpaII CCGG 2 cut(s) 493, 1127
HphI GGTGA 4 cut(s) 494, 1392, 1431, 1436
Hpy166II GTNNAC 5 cut(s) 204, 312, 1120, 1157, 1281
Hpy188I TCNGA 4 cut(s) 40, 443, 822, 1273
Hpy188III TCNNGA 6 cut(s) 102, 182, 189, 334, 398, 613
Hpy8I GTNNAC 5 cut(s) 204, 312, 1120, 1157, 1281
HpyAV CCTTC 7 cut(s) 70, 350, 509, 795, 903, 998, 1446
HpyCH4III ACNGT 4 cut(s) 161, 316, 525, 559
HpyCH4IV ACGT 4 cut(s) 702, 764, 854, 894
HpyCH4V TGCA 9 cut(s) 357, 464, 564, 596, 646, 834, 946, 1110, 1385
HpyF10VI GCNNNNNNNGC 3 cut(s) 910, 1067, 1076
HpyF3I CTNAG 4 cut(s) 413, 668, 848, 973
HpySE526I ACGT 4 cut(s) 702, 764, 854, 894
Hsp92II CATG 3 cut(s) 234, 249, 1114
HspAI GCGC 2 cut(s) 1145, 1291
Kzo9I GATC 4 cut(s) 217, 336, 817, 1295
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 2 cut(s) 277, 1300
LweI GCATC 1 cut(s) 1372
MaeI CTAG 3 cut(s) 323, 1338, 1374
MaeII ACGT 4 cut(s) 702, 764, 854, 894
MaeIII GTNAC 4 cut(s) 125, 698, 855, 1000
MalI GATC 4 cut(s) 219, 338, 819, 1297
MboI GATC 4 cut(s) 217, 336, 817, 1295
MboII GAAGA 6 cut(s) 531, 722, 725, 1250, 1357, 1391
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 640, 1041
MlsI TGGCCA 1 cut(s) 31
MluCI AATT 6 cut(s) 285, 477, 486, 753, 1299, 1355
MluNI TGGCCA 1 cut(s) 31
MlyI GAGTC 3 cut(s) 153, 665, 1237
Mox20I TGGCCA 1 cut(s) 31
Mph1103I ATGCAT 1 cut(s) 1112
MscI TGGCCA 1 cut(s) 31
MseI TTAA 3 cut(s) 497, 537, 920
Msp20I TGGCCA 1 cut(s) 31
MspA1I CMGCKG 1 cut(s) 695
MspI CCGG 2 cut(s) 493, 1127
MspR9I CCNGG 2 cut(s) 587, 1127
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 3 cut(s) 910, 1067, 1076
NciI CCSGG 1 cut(s) 1127
NdeI CATATG 1 cut(s) 1233
NdeII GATC 4 cut(s) 217, 336, 817, 1295
NlaIII CATG 3 cut(s) 234, 249, 1114
NlaIV GGNNCC 2 cut(s) 760, 1344
NmeAIII GCCGAG 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 1112
NspI RCATGY 2 cut(s) 249, 1114
PaeI GCATGC 2 cut(s) 249, 1114
PfeI GAWTC 5 cut(s) 105, 185, 254, 1136, 1397
PkrI GCNGC 2 cut(s) 292, 1290
PleI GAGTC 3 cut(s) 152, 664, 1236
PpsI GAGTC 3 cut(s) 152, 664, 1236
Ppu21I YACGTR 1 cut(s) 895
Psp6I CCWGG 1 cut(s) 585
PspFI CCCAGC 2 cut(s) 121, 1147
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 2 cut(s) 760, 1344
PspPI GGNCC 3 cut(s) 428, 758, 1343
PstI CTGCAG 1 cut(s) 948
PsuI RGATCY 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 2 cut(s) 802, 853
RsaNI GTAC 2 cut(s) 801, 852
SaqAI TTAA 3 cut(s) 497, 537, 920
SatI GCNGC 2 cut(s) 291, 1289
Sau3AI GATC 4 cut(s) 217, 336, 817, 1295
Sau96I GGNCC 3 cut(s) 428, 758, 1343
SchI GAGTC 3 cut(s) 153, 665, 1237
ScrFI CCNGG 2 cut(s) 587, 1127
SduI GDGCHC 2 cut(s) 640, 1041
SfaNI GCATC 1 cut(s) 1372
SfcI CTRYAG 2 cut(s) 157, 944
SinI GGWCC 2 cut(s) 758, 1343
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
SphI GCATGC 2 cut(s) 249, 1114
Sse9I AATT 6 cut(s) 285, 477, 486, 753, 1299, 1355
SsiI CCGC 3 cut(s) 1094, 1133, 1406
SspI AATATT 1 cut(s) 775
SspMI CTAG 3 cut(s) 323, 1338, 1374
StyD4I CCNGG 2 cut(s) 585, 1125
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 4 cut(s) 161, 316, 525, 559
TaiI ACGT 4 cut(s) 705, 767, 857, 897
TaqII GACCGA 1 cut(s) 830
TasI AATT 6 cut(s) 285, 477, 486, 753, 1299, 1355
TatI WGTACW 1 cut(s) 800
TfiI GAWTC 5 cut(s) 105, 185, 254, 1136, 1397
Tru1I TTAA 3 cut(s) 497, 537, 920
Tru9I TTAA 3 cut(s) 497, 537, 920
TscAI CASTG 1 cut(s) 430
TseI GCWGC 2 cut(s) 290, 1288
TspDTI ATGAA 3 cut(s) 20, 442, 1323
TspGWI ACGGA 1 cut(s) 1298
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 758, 1343
XceI RCATGY 2 cut(s) 249, 1114
XspI CTAG 3 cut(s) 323, 1338, 1374
Zsp2I ATGCAT 1 cut(s) 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.