AT1G58210

actin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010074
Physical Location & Seq
Forward (+)
21553537 .. 21554778
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58210.1

Sequence Viewer

Length: 846 bp
ATGACGACGACGAGGGCGAAGTCCAAATTCCAGTCTCTCTCAGCATGTCGCTTCACGCCGTTACCGGAACCCAATACCTCACCGAGCACTTACTCCAAGACTTTACCAAAACCCAATTCCTCGCCGGGAACCGACGGAACTTTCCCAACACCGTTTCCCTTAGCTGTCATCACTCCAATCAAAACCCTAAAATCCGTCACATTATCCGATTGGTGGCTAACAAAGAAAGGCAAAGATTTGTGTATTAAAGGATTCGAATCAAATGGTGCATCTGGAGTAAGACTGTTTTCATCAGGAACAATCTCAAAGCGACATGAAAGTACAACTCTTGAAGCAATTGATGGGATTACAATTTCTATCAATGGTTTCATCAATCGATCTCGTTGTCTAGAGAATGGTATTTCGATTGAGGTTTGTAATCGTTTTCGTTTAGGGTTTCCTTATGATTGGGAAGATTACAATGAAGAAGAAGAAGAGAAGAAGAAGAAGAATGTTGATATTTCGTTTGATGATATTCCTGTGAATAGGTATCAGGATCTTTATTCTCTTGAGGGTTGTTTGAAAGATAAGATTTTGGACGATGTTGTTGGTAGTTTAAGAGATTTGGTTTGTCAGAAATCTGATAAGGCATGTGAGAAATCAAGAGTTGGTGATGTTGATGATGATGATGATGATGATGATGATAAGAGTTTGGTTTCGAGGGTTGTGGGAGTGAAGACTAGAGGTATGCTTAGAAGGAGAGAAGAGTATGAAGCTTCTATTGGGAAAAGAGTTGCGACCATGTCTGGGAAAAGAGTTGTGACAGTGTCCAAGAAGAAGAATAGGAGAAGAAGTTTCGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0008092 GO:0016020 GO:0044464 GO:0044877 GO:0051015 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIP1 SANTA

Protein Analysis

281

Amino Acids

31.56

Weight (kDa)

8.84

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 66 - 153 8.8e-26 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58210 AT5G02520 AT5G02520 AT5G02520
fragaria_vesca FvH4_4g11320 FvH4_4g11320
malus_domestica MD04G1038200.v1.1
prunus_persica Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1
pyrus_communis pycom04g03110
rosa_chinensis RchiOBHm_Chr4g0407561
rosa_laevigata RLG00000008710
rosa_multiflora Rmu_sc0004841.1_g000004
rosa_roxburghii Rroxscaffold_5G00352180
rosa_rugosa Rorug04G0080400
rosa_samantha Rh4AG145100 Rh4BG143000 Rh4CG151800 Rh4DG139100
rosa_wichuraiana Rw4G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 543
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 213, 786
AgsI TTSAA 2 cut(s) 332, 562
AjuI GAANNNNNNNTTGG 5 cut(s) 100, 132, 744, 776, 823
AluBI AGCT 2 cut(s) 164, 755
AluI AGCT 2 cut(s) 164, 755
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 1 cut(s) 543
ApoI RAATTY 1 cut(s) 26
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 72, 662
AsuII TTCGAA 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 722
Bbv12I GWGCWC 1 cut(s) 89
BccI CCATC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 2 cut(s) 389, 720
Bme1390I CCNGG 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 69, 130
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 722
BpmI CTGGAG 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 126
Bsa29I ATCGAT 1 cut(s) 376
BsaBI GATNNNNATC 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 1 cut(s) 817
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 786
Bse1I ACTGG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 256
BseCI ATCGAT 1 cut(s) 376
BseJI GATNNNNATC 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 213, 786
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 2 cut(s) 65, 125
BslI CCNNNNNNNGG 2 cut(s) 213, 786
BsmAI GTCTC 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 377, 535
BspCNI CTCAG 1 cut(s) 53
BspDI ATCGAT 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 69, 130
BspPI GGATC 1 cut(s) 543
BspT104I TTCGAA 1 cut(s) 255
BsrI ACTGG 1 cut(s) 31
BssMI GATC 2 cut(s) 377, 535
Bst4CI ACNGT 3 cut(s) 153, 285, 805
Bst6I CTCTTC 2 cut(s) 468, 738
BstBI TTCGAA 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 40, 160, 731
BstKTI GATC 2 cut(s) 380, 538
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 2 cut(s) 377, 535
BstNSI RCATGY 2 cut(s) 48, 633
BstSCI CCNGG 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 722
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
Bsu15I ATCGAT 1 cut(s) 376
BsuTUI ATCGAT 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 810
ClaI ATCGAT 1 cut(s) 376
Csp6I GTAC 1 cut(s) 321
CviAII CATG 4 cut(s) 45, 314, 630, 781
CviJI RGCY 3 cut(s) 164, 217, 755
CviKI_1 RGCY 3 cut(s) 164, 217, 755
CviQI GTAC 1 cut(s) 321
DdeI CTNAG 3 cut(s) 40, 160, 731
DpnI GATC 2 cut(s) 379, 537
DpnII GATC 2 cut(s) 377, 535
Eam1104I CTCTTC 2 cut(s) 468, 738
EarI CTCTTC 2 cut(s) 468, 738
FaeI CATG 4 cut(s) 48, 317, 633, 784
FaiI YATR 7 cut(s) 46, 315, 444, 631, 728, 750, 782
FatI CATG 4 cut(s) 44, 313, 629, 780
FspBI CTAG 2 cut(s) 389, 720
GsuI CTGGAG 1 cut(s) 294
HapII CCGG 2 cut(s) 65, 125
Hin1II CATG 4 cut(s) 48, 317, 633, 784
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 2 cut(s) 252, 257
HpaII CCGG 2 cut(s) 65, 125
HphI GGTGA 2 cut(s) 72, 662
Hpy188I TCNGA 3 cut(s) 208, 615, 622
Hpy188III TCNNGA 7 cut(s) 273, 294, 329, 389, 533, 548, 642
Hpy99I CGWCG 3 cut(s) 10, 13, 137
HpyAV CCTTC 1 cut(s) 729
HpyCH4III ACNGT 3 cut(s) 153, 285, 805
HpyCH4V TGCA 1 cut(s) 269
HpyF3I CTNAG 3 cut(s) 40, 160, 731
Hsp92II CATG 4 cut(s) 48, 317, 633, 784
Kzo9I GATC 2 cut(s) 377, 535
LpnPI CCDG 8 cut(s) 44, 78, 138, 258, 279, 518, 531, 771
LweI GCATC 1 cut(s) 278
MaeI CTAG 2 cut(s) 389, 720
MaeIII GTNAC 3 cut(s) 60, 196, 799
MalI GATC 2 cut(s) 379, 537
MboI GATC 2 cut(s) 377, 535
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 4 cut(s) 26, 115, 336, 351
MnlI CCTC 7 cut(s) 6, 88, 130, 403, 544, 693, 716
MseI TTAA 2 cut(s) 246, 596
MspI CCGG 2 cut(s) 65, 125
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 336
NciI CCSGG 1 cut(s) 126
NdeII GATC 2 cut(s) 377, 535
NlaIII CATG 4 cut(s) 48, 317, 633, 784
NlaIV GGNNCC 2 cut(s) 69, 130
NmuCI GTSAC 2 cut(s) 196, 799
NspI RCATGY 2 cut(s) 48, 633
NspV TTCGAA 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 2 cut(s) 252, 257
PflFI GACNNNGTC 2 cut(s) 781, 805
PspN4I GGNNCC 2 cut(s) 69, 130
PsuI RGATCY 1 cut(s) 535
PsyI GACNNNGTC 2 cut(s) 781, 805
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 246, 596
Sau3AI GATC 2 cut(s) 377, 535
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 89
SetI ASST 6 cut(s) 80, 166, 414, 530, 727, 757
SfaNI GCATC 1 cut(s) 278
SfuI TTCGAA 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 4 cut(s) 26, 115, 336, 351
SspMI CTAG 2 cut(s) 389, 720
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 3 cut(s) 153, 285, 805
TaqI TCGA 4 cut(s) 255, 376, 404, 698
TasI AATT 4 cut(s) 26, 115, 336, 351
TatI WGTACW 1 cut(s) 320
TfiI GAWTC 2 cut(s) 252, 257
Tru1I TTAA 2 cut(s) 246, 596
Tru9I TTAA 2 cut(s) 246, 596
TscAI CASTG 1 cut(s) 810
TseFI GTSAC 2 cut(s) 196, 799
Tsp45I GTSAC 2 cut(s) 196, 799
TspDTI ATGAA 5 cut(s) 279, 330, 358, 477, 765
TspGWI ACGGA 2 cut(s) 150, 184
TspRI CASTG 1 cut(s) 810
Tth111I GACNNNGTC 2 cut(s) 781, 805
XapI RAATTY 1 cut(s) 26
XbaI TCTAGA 1 cut(s) 388
XceI RCATGY 2 cut(s) 48, 633
XspI CTAG 2 cut(s) 389, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.