AT5G02520

SANTA (SANT Associated)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
561179 .. 564142
2964 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02520.2

Sequence Viewer

Length: 1797 bp
ATGACGGAACCAAATCTCGACGAAGATGGTTCCAAGTCGTCTTTCCAGAAAACGGTGGTGCTGAGAGATTGGTGGTTGATAAAATGCCCAAAGGAATTCGAAGGGAAACAATTTGGTGTTGCTGGATTCGAAGAGTCCGTCGAGACAAGAGCAATGCGTGTGTTTACATCTTCACCAATCACCAAAGCTTTGGATGTTTTCACACTCTTAGCATCTGATGGAATCTATATCACTCTCAGAGGTTTTCTTAACAAAGAACGCGTTCTTAAAAATGGATTTAACCCTGAGATTTCTCGTGAATTCATCTTCGGGTTTCCTCCTTGTTGGGAACGAGTTTGTAACAGTTGCTTTGAAGGAGACTCTTTTGGCACTGATGTTAATACCGTCCCTTCGACTATCGAGAAAGCTTGTCCTCCCATTTTATCACCTTGTAAGTACTCTAACAGGAATCTTAAGGATAATCCAGCTGAGAGCAGAGAGAAAAGCAATGTGACTGAGACTGATATTGCAGAGATTAATGATAAAGGTGGTTCTGGAGCAAGAGATATAAAAACTGCAAGGAGAAGGTCTCTTCATCTGCAAATAAAAAGGATACTTGAATCGAGTAAAGTCCGGAAGACTGCTAATGATGGAGATCATGGTAGTGAATTTTTGAATACGGCTAAGCGCGGTGATGTAGAAAGAGATGGATGTGAGGTTATCAATAATGAAGACAGTGAATGGAAACTCGATGAAAGTGAAGTCCAGAATCTTTGTAATGATGGAGATAATGGTAGTGAAGGTTTCATTAAGGCTAAGAGCAGTGATGTAGAAAAAGATAAGAGCGAAGCTATCGATAATGATGTGATATCTCCAGCGGTTGGAAGTGGTATTAAGCATACCGGTGCAGATAATGTTGATAAAGTGACAAGTGCAAGTGCTACTGGAGAATCACTTACTTCGGAACAGCAAAATGGTTTACTTGTAACAACAGCATCTCCACATTCCCTGCTTAAAGACTTAGCCAAGAGTAGCAAACCTGAAAAGAAAGGAATATCCAAGAAAAGTGGCAAGATCCTCAGAAGTGACGACAATGTAGTAGATCCCATGAATTACTCTGGGACGAAAGTCAAAAGTGCGGAAAACAAAAGGAAAATCGATGCGAGTAAACTCCAGAGTCCGACTAGTAATGTTGCAGAACATAGTAAGGAAGGTTTAAATAATGCTAAGAGCAATGACGTAGAAAAAGATGTATGTGTGGCTATCAATAATGAAGTGATATCACCAGTGAAGGGATTTGGTAAAAGGCTTTCTGGTACAGATGTTGAAAGATTAACAAGTAAGAATGCTACTAAAGAATCACTGACGTCAGTACAGCGAAAAGGTAGAGTGAAGGTATCGAAGGCATTTCAAGATCCCCTGTCGAAAGGAAAATCAAAGAAAAGTGAGAAGACCCTTCAAAGTAACAGCAATGTTGTAGAGCCTATGAATCATTTCAGGTCTGAAGCTGAAGAAGCTGAAGAAAACTTGTCATGGGAAAAAATAAAGAGGAAAATCGACTTTGATGTGGAGGTAACACCGGAAAAAAAAGTGAAGCAGCAGAAGACCAATGCGGCGTCTACTGATTCATTGGGACAGAAACGGTCAAGATCAGGAAGGGTGCTTGTGTCATCACTAGAGTTTTGGCGTAACCAAATTCCTGTTTATGATATGGATCGGAACCTTATCCAAGTAAAGGATGGTAGTGAGACTAACTCCGCTCCATCTAAAGGAAAAGGATCGGATTCTCGAAAGCGAAGAAACTTGAAAATCAAATAA

Protein Analysis

598

Amino Acids

66.05

Weight (kDa)

8.82

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 19 - 111 9.1e-26 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010074)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1349
AccB7I CCANNNNNTGG 1 cut(s) 860
AccBSI CCGCTC 1 cut(s) 1739
AccI GTMKAC 1 cut(s) 1598
AccII CGCG 2 cut(s) 261, 669
AccIII TCCGGA 1 cut(s) 612
AciI CCGC 5 cut(s) 669, 857, 1118, 1592, 1737
AclWI GGATC 5 cut(s) 1048, 1076, 1388, 1701, 1765
AcsI RAATTY 4 cut(s) 95, 299, 647, 1674
AcuI CTGAAG 3 cut(s) 1503, 1509, 1518
AcyI GRCGYC 2 cut(s) 1346, 1595
AfaI GTAC 3 cut(s) 437, 1297, 1353
AfiI CCNNNNNNNGG 5 cut(s) 52, 860, 1271, 1714, 1748
AflII CTTAAG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 259
AgeI ACCGGT 1 cut(s) 881
AgsI TTSAA 7 cut(s) 353, 599, 655, 1307, 1391, 1439, 1786
AhlI ACTAGT 1 cut(s) 1163
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 6 cut(s) 188, 407, 467, 830, 1487, 1496
AluI AGCT 6 cut(s) 188, 407, 467, 830, 1487, 1496
Alw26I GTCTC 5 cut(s) 137, 351, 491, 573, 1721
AlwI GGATC 5 cut(s) 1048, 1076, 1388, 1701, 1765
Aor13HI TCCGGA 1 cut(s) 612
ApeKI GCWGC 1 cut(s) 1576
ApoI RAATTY 4 cut(s) 95, 299, 647, 1674
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AseI ATTAAT 1 cut(s) 516
AsiGI ACCGGT 1 cut(s) 881
Asp700I GAANNNNTTC 2 cut(s) 261, 1472
AspLEI GCGC 1 cut(s) 669
AsuHPI GGTGA 5 cut(s) 165, 172, 417, 683, 1254
AsuII TTCGAA 2 cut(s) 99, 129
BaeI ACNNNNGTAYC 2 cut(s) 1287, 1320
BauI CACGAG 1 cut(s) 294
BbsI GAAGAC 4 cut(s) 623, 717, 1436, 1589
BbvI GCAGC 1 cut(s) 1588
BccI CCATC 7 cut(s) 20, 212, 623, 680, 755, 1712, 1750
BceAI ACGGC 1 cut(s) 675
BciVI GTATCC 1 cut(s) 585
BcoDI GTCTC 5 cut(s) 137, 351, 491, 573, 1721
BcuI ACTAGT 1 cut(s) 1163
BfaI CTAG 2 cut(s) 1164, 1655
BfrI CTTAAG 1 cut(s) 452
BfuI GTATCC 1 cut(s) 585
BisI GCNGC 2 cut(s) 1577, 1593
BlpI GCTNAGC 1 cut(s) 663
BlsI GCNGC 2 cut(s) 1578, 1594
BmcAI AGTACT 1 cut(s) 437
BmiI GGNNCC 3 cut(s) 9, 31, 1700
BmsI GCATC 3 cut(s) 221, 983, 1129
BoxI GACNNNNGTC 1 cut(s) 1106
BpiI GAAGAC 4 cut(s) 623, 717, 1436, 1589
BplI GAGNNNNNCTC 4 cut(s) 553, 585, 1718, 1750
BpmI CTGGAG 4 cut(s) 555, 837, 945, 1136
Bpu1102I GCTNAGC 1 cut(s) 663
Bpu14I TTCGAA 2 cut(s) 99, 129
Bsa29I ATCGAT 2 cut(s) 834, 1137
BsaBI GATNNNNATC 2 cut(s) 633, 1692
BsaHI GRCGYC 2 cut(s) 1346, 1595
BsaI GGTCTC 1 cut(s) 573
BsaWI WCCGGW 3 cut(s) 612, 881, 1558
BsaXI ACNNNNNCTCC 2 cut(s) 961, 991
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 860, 1271, 1714, 1748
Bse118I RCCGGY 1 cut(s) 881
Bse1I ACTGG 2 cut(s) 928, 1265
Bse3DI GCAATG 4 cut(s) 159, 493, 1219, 1456
Bse8I GATNNNNATC 2 cut(s) 633, 1692
BseAI TCCGGA 1 cut(s) 612
BseCI ATCGAT 2 cut(s) 834, 1137
BseGI GGATG 3 cut(s) 199, 695, 1723
BseJI GATNNNNATC 2 cut(s) 633, 1692
BseLI CCNNNNNNNGG 5 cut(s) 52, 860, 1271, 1714, 1748
BseMI GCAATG 4 cut(s) 159, 493, 1219, 1456
BseMII CTCAG 6 cut(s) 53, 250, 276, 459, 486, 1072
BseNI ACTGG 2 cut(s) 928, 1265
BseXI GCAGC 1 cut(s) 1588
BsgI GTGCAG 1 cut(s) 906
Bsh1236I CGCG 2 cut(s) 261, 669
BshTI ACCGGT 1 cut(s) 881
BshVI ATCGAT 2 cut(s) 834, 1137
BsiSI CCGG 3 cut(s) 613, 882, 1559
BslFI GGGAC 3 cut(s) 371, 1114, 1626
BslI CCNNNNNNNGG 5 cut(s) 52, 860, 1271, 1714, 1748
BsmAI GTCTC 5 cut(s) 137, 351, 491, 573, 1721
BsmFI GGGAC 3 cut(s) 371, 1114, 1626
BsmI GAATGC 1 cut(s) 1330
Bso31I GGTCTC 1 cut(s) 573
Bsp119I TTCGAA 2 cut(s) 99, 129
Bsp13I TCCGGA 1 cut(s) 612
Bsp143I GATC 7 cut(s) 634, 1053, 1081, 1393, 1628, 1693, 1757
Bsp1720I GCTNAGC 1 cut(s) 663
BspACI CCGC 5 cut(s) 669, 857, 1118, 1592, 1737
BspCNI CTCAG 6 cut(s) 54, 249, 277, 460, 487, 1071
BspDI ATCGAT 2 cut(s) 834, 1137
BspEI TCCGGA 1 cut(s) 612
BspFNI CGCG 2 cut(s) 261, 669
BspLI GGNNCC 3 cut(s) 9, 31, 1700
BspPI GGATC 5 cut(s) 1048, 1076, 1388, 1701, 1765
BspT104I TTCGAA 2 cut(s) 99, 129
BspTI CTTAAG 1 cut(s) 452
BspTNI GGTCTC 1 cut(s) 573
BsrBI CCGCTC 1 cut(s) 1739
BsrDI GCAATG 4 cut(s) 159, 493, 1219, 1456
BsrFI RCCGGY 1 cut(s) 881
BsrI ACTGG 2 cut(s) 928, 1265
BssAI RCCGGY 1 cut(s) 881
BssMI GATC 7 cut(s) 634, 1053, 1081, 1393, 1628, 1693, 1757
BssNI GRCGYC 2 cut(s) 1346, 1595
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst4CI ACNGT 5 cut(s) 55, 344, 385, 716, 1623
Bst6I CTCTTC 2 cut(s) 126, 576
BstACI GRCGYC 2 cut(s) 1346, 1595
BstAFI CTTAAG 1 cut(s) 452
BstBI TTCGAA 2 cut(s) 99, 129
BstF5I GGATG 3 cut(s) 199, 695, 1723
BstFNI CGCG 2 cut(s) 261, 669
BstHHI GCGC 1 cut(s) 669
BstKTI GATC 7 cut(s) 637, 1056, 1084, 1396, 1631, 1696, 1760
BstMAI GTCTC 5 cut(s) 137, 351, 491, 573, 1721
BstMBI GATC 7 cut(s) 634, 1053, 1081, 1393, 1628, 1693, 1757
BstMWI GCNNNNNNNGC 1 cut(s) 1493
BstPAI GACNNNNGTC 1 cut(s) 1106
BstUI CGCG 2 cut(s) 261, 669
BstV1I GCAGC 1 cut(s) 1588
BstV2I GAAGAC 4 cut(s) 623, 717, 1436, 1589
BstX2I RGATCY 3 cut(s) 1053, 1081, 1393
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 3 cut(s) 1053, 1081, 1393
Bsu15I ATCGAT 2 cut(s) 834, 1137
BsuI GTATCC 1 cut(s) 585
BsuTUI ATCGAT 2 cut(s) 834, 1137
BtsCI GGATG 3 cut(s) 199, 695, 1723
BtsI GCAGTG 1 cut(s) 808
BtsIMutI CAGTG 5 cut(s) 369, 721, 808, 1272, 1340
CfoI GCGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 881
ClaI ATCGAT 2 cut(s) 834, 1137
CseI GACGC 1 cut(s) 1584
Csp6I GTAC 3 cut(s) 436, 1296, 1352
CspAI ACCGGT 1 cut(s) 881
CspCI CAANNNNNGTGG 2 cut(s) 1027, 1062
CviAII CATG 3 cut(s) 638, 1087, 1512
CviQI GTAC 3 cut(s) 436, 1296, 1352
DpnI GATC 7 cut(s) 636, 1055, 1083, 1395, 1630, 1695, 1759
DpnII GATC 7 cut(s) 634, 1053, 1081, 1393, 1628, 1693, 1757
DraI TTTAAA 1 cut(s) 1197
Eam1104I CTCTTC 2 cut(s) 126, 576
EarI CTCTTC 2 cut(s) 126, 576
Eco31I GGTCTC 1 cut(s) 573
Eco32I GATATC 2 cut(s) 849, 1260
Eco57I CTGAAG 3 cut(s) 1503, 1509, 1518
EcoRI GAATTC 2 cut(s) 95, 299
EcoRV GATATC 2 cut(s) 849, 1260
FaeI CATG 3 cut(s) 641, 1090, 1515
FaqI GGGAC 3 cut(s) 371, 1114, 1626
FatI CATG 3 cut(s) 637, 1086, 1511
FblI GTMKAC 1 cut(s) 1598
Fnu4HI GCNGC 2 cut(s) 1577, 1593
FokI GGATG 3 cut(s) 206, 702, 1730
Fsp4HI GCNGC 2 cut(s) 1577, 1593
FspBI CTAG 2 cut(s) 1164, 1655
GlaI GCGC 1 cut(s) 668
GluI GCNGC 2 cut(s) 1577, 1593
GsuI CTGGAG 4 cut(s) 555, 837, 945, 1136
HapII CCGG 3 cut(s) 613, 882, 1559
HgaI GACGC 1 cut(s) 1584
HhaI GCGC 1 cut(s) 669
Hin1I GRCGYC 2 cut(s) 1346, 1595
Hin1II CATG 3 cut(s) 641, 1090, 1515
Hin6I GCGC 1 cut(s) 667
HinP1I GCGC 1 cut(s) 667
HindIII AAGCTT 2 cut(s) 186, 405
HpaII CCGG 3 cut(s) 613, 882, 1559
HphI GGTGA 5 cut(s) 165, 172, 417, 683, 1254
Hpy166II GTNNAC 4 cut(s) 165, 959, 1148, 1599
Hpy188I TCNGA 8 cut(s) 217, 239, 943, 1061, 1161, 1483, 1698, 1762
Hpy8I GTNNAC 4 cut(s) 165, 959, 1148, 1599
Hpy99I CGWCG 2 cut(s) 23, 143
HpyCH4III ACNGT 5 cut(s) 55, 344, 385, 716, 1623
HpyCH4IV ACGT 2 cut(s) 1218, 1346
HpyCH4V TGCA 6 cut(s) 509, 557, 580, 887, 914, 1175
HpyF10VI GCNNNNNNNGC 1 cut(s) 1493
HpySE526I ACGT 2 cut(s) 1218, 1346
Hsp92I GRCGYC 2 cut(s) 1346, 1595
Hsp92II CATG 3 cut(s) 641, 1090, 1515
HspAI GCGC 1 cut(s) 667
Kpn2I TCCGGA 1 cut(s) 612
Kzo9I GATC 7 cut(s) 634, 1053, 1081, 1393, 1628, 1693, 1757
LmnI GCTCC 2 cut(s) 536, 1744
Lsp1109I GCAGC 1 cut(s) 1588
LweI GCATC 3 cut(s) 221, 983, 1129
MaeI CTAG 2 cut(s) 1164, 1655
MaeII ACGT 2 cut(s) 1218, 1346
MaeIII GTNAC 8 cut(s) 338, 490, 904, 964, 1064, 1442, 1552, 1667
MalI GATC 7 cut(s) 636, 1055, 1083, 1395, 1630, 1695, 1759
MbiI CCGCTC 1 cut(s) 1739
MboI GATC 7 cut(s) 634, 1053, 1081, 1393, 1628, 1693, 1757
MflI RGATCY 3 cut(s) 1053, 1081, 1393
MluCI AATT 6 cut(s) 95, 110, 299, 647, 1090, 1674
MluI ACGCGT 1 cut(s) 259
MlyI GAGTC 3 cut(s) 143, 353, 1165
MmeI TCCRAC 2 cut(s) 841, 1184
MnlI CCTC 7 cut(s) 233, 327, 423, 688, 1067, 1521, 1543
MroI TCCGGA 1 cut(s) 612
MroXI GAANNNNTTC 2 cut(s) 261, 1472
MslI CAYNNNNRTG 2 cut(s) 642, 882
MspA1I CMGCKG 2 cut(s) 467, 857
MspCI CTTAAG 1 cut(s) 452
MspI CCGG 3 cut(s) 613, 882, 1559
Mva1269I GAATGC 1 cut(s) 1330
MvnI CGCG 2 cut(s) 261, 669
MwoI GCNNNNNNNGC 1 cut(s) 1493
NdeII GATC 7 cut(s) 634, 1053, 1081, 1393, 1628, 1693, 1757
NlaIII CATG 3 cut(s) 641, 1090, 1515
NlaIV GGNNCC 3 cut(s) 9, 31, 1700
NmuCI GTSAC 3 cut(s) 490, 904, 1064
NspV TTCGAA 2 cut(s) 99, 129
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 1330
PdmI GAANNNNTTC 2 cut(s) 261, 1472
PflMI CCANNNNNTGG 1 cut(s) 860
PinAI ACCGGT 1 cut(s) 881
PkrI GCNGC 2 cut(s) 1578, 1594
PleI GAGTC 3 cut(s) 142, 353, 1164
PpsI GAGTC 3 cut(s) 142, 353, 1164
PshAI GACNNNNGTC 1 cut(s) 1106
PshBI ATTAAT 1 cut(s) 516
PspN4I GGNNCC 3 cut(s) 9, 31, 1700
PsuI RGATCY 3 cut(s) 1053, 1081, 1393
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 3 cut(s) 437, 1297, 1353
RsaNI GTAC 3 cut(s) 436, 1296, 1352
RseI CAYNNNNRTG 2 cut(s) 642, 882
SatI GCNGC 2 cut(s) 1577, 1593
Sau3AI GATC 7 cut(s) 634, 1053, 1081, 1393, 1628, 1693, 1757
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 3 cut(s) 143, 353, 1165
SfaNI GCATC 3 cut(s) 221, 983, 1129
SfuI TTCGAA 2 cut(s) 99, 129
SmiMI CAYNNNNRTG 2 cut(s) 642, 882
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SpeI ACTAGT 1 cut(s) 1163
Sse9I AATT 6 cut(s) 95, 110, 299, 647, 1090, 1674
SsiI CCGC 5 cut(s) 669, 857, 1118, 1592, 1737
SspMI CTAG 2 cut(s) 1164, 1655
TaaI ACNGT 5 cut(s) 55, 344, 385, 716, 1623
TaiI ACGT 2 cut(s) 1221, 1349
TasI AATT 6 cut(s) 95, 110, 299, 647, 1090, 1674
TatI WGTACW 2 cut(s) 435, 1351
TauI GCSGC 1 cut(s) 1595
TscAI CASTG 5 cut(s) 376, 721, 808, 1272, 1347
TseFI GTSAC 3 cut(s) 490, 904, 1064
TseI GCWGC 1 cut(s) 1576
Tsp45I GTSAC 3 cut(s) 490, 904, 1064
TspDTI ATGAA 9 cut(s) 292, 563, 723, 747, 775, 1103, 1266, 1481, 1596
TspGWI ACGGA 2 cut(s) 20, 127
TspRI CASTG 5 cut(s) 376, 721, 808, 1272, 1347
Van91I CCANNNNNTGG 1 cut(s) 860
Vha464I CTTAAG 1 cut(s) 452
VspI ATTAAT 1 cut(s) 516
XapI RAATTY 4 cut(s) 95, 299, 647, 1674
XcmI CCANNNNNNNNNTGG 1 cut(s) 1715
XmiI GTMKAC 1 cut(s) 1598
XmnI GAANNNNTTC 2 cut(s) 261, 1472
XspI CTAG 2 cut(s) 1164, 1655
ZraI GACGTC 1 cut(s) 1347
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.