Prupe.1G188100_v2.0.a1

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010074
Physical Location & Seq
Reverse (-)
17219741 .. 17222311
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G188100.3

Sequence Viewer

Length: 894 bp
ATGGTGACTACAAGAAGACAGGCGGCCTCTGCAACTCCGGACCCGAAAACGCCCCAAAATGCTCCGAATCCCAACCCAAATACCCGAAACCCTCGAACACCATTTTCCACCACGGCCATCATCTCCGCCTCCGTCAAATCTGTCTTATTGCATGATTGGTGGCTGGTAAAGGCAAAAGGAAAGGGCTTGGCTGTTGGAGGTCTTTCTTCTAGAGATGGACTAGGAGTAAGAGTTTTTAGCTCAGCAGAAATTTCCAAGAGACACACGGCCACTGTTCTTGAGACAGCAGATGGGATCATGGTTACAGTTACTGGCTTCTTAGATAGGTCTCGCACGCATCAAAATGGCCTTCCCCCTGAGCTATACAATCACTTTCTGCTTGGATTTCCATTTAACTGGGAGGAGTACGTTGCTGTTGATTTGGGTGAAGATTCTACTGACATAGCTGCATCATTGAGGAAATCAGCTTCTCAAAAGTTCAACATGCCTTCAAGAAACAACGAAAGGAATTCCTTACCATTTTCTTTAGATGATCTCTCAGCGACAAAGGGACGAGATATATTAATGTTAGGTTATGGAGACTCCGATTATCGTTCACTAGTGAAGAACATTTTCAGTGATATACTGGGAACATCCAAGGACAATGCTTTTGAGTGTACCGGGTCATCAATCAATTTAAATGTGGAAAATAGTTGTCCGGTTGAAAATGTAGATTCTGGAACAACTAAAACTCCAACAAAGCATAAGAAGGTTATTGTTCAAGATGACAAAAACGTGATCACGGAAACCAGTAGGGTAGGGGTTTCCACAAGAAGCATGACTAGGAGTGTTTCCACAAGCAGAATGACTATAAGGAAGATTTCCACAAGAAGCAGCACCAGAAGAAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

298

Amino Acids

32.54

Weight (kDa)

9.77

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58210 AT5G02520 AT5G02520 AT5G02520
fragaria_vesca FvH4_4g11320 FvH4_4g11320
malus_domestica MD04G1038200.v1.1
prunus_persica Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1
pyrus_communis pycom04g03110
rosa_chinensis RchiOBHm_Chr4g0407561
rosa_laevigata RLG00000008710
rosa_multiflora Rmu_sc0004841.1_g000004
rosa_roxburghii Rroxscaffold_5G00352180
rosa_rugosa Rorug04G0080400
rosa_samantha Rh4AG145100 Rh4BG143000 Rh4CG151800 Rh4DG139100
rosa_wichuraiana Rw4G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 2 cut(s) 23, 126
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 2 cut(s) 114, 267
AcsI RAATTY 2 cut(s) 249, 508
AfaI GTAC 2 cut(s) 407, 658
AgsI TTSAA 4 cut(s) 481, 492, 704, 761
AhlI ACTAGT 1 cut(s) 598
AluBI AGCT 4 cut(s) 240, 361, 446, 467
AluI AGCT 4 cut(s) 240, 361, 446, 467
Alw26I GTCTC 4 cut(s) 253, 275, 333, 573
AlwI GGATC 1 cut(s) 302
AlwNI CAGNNNCTG 1 cut(s) 311
Aor13HI TCCGGA 1 cut(s) 37
AoxI GGCC 4 cut(s) 24, 114, 267, 346
ApeKI GCWGC 2 cut(s) 446, 873
ApoI RAATTY 2 cut(s) 249, 508
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
AseI ATTAAT 1 cut(s) 563
Asp700I GAANNNNTTC 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 661
AsuHPI GGTGA 2 cut(s) 16, 437
AvaII GGWCC 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 433, 885
BccI CCATC 3 cut(s) 125, 209, 284
BceAI ACGGC 2 cut(s) 129, 282
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 1 cut(s) 661
BcoDI GTCTC 4 cut(s) 253, 275, 333, 573
BcuI ACTAGT 1 cut(s) 598
BfaI CTAG 4 cut(s) 210, 221, 599, 822
BisI GCNGC 3 cut(s) 24, 447, 874
BlpI GCTNAGC 1 cut(s) 241
BlsI GCNGC 3 cut(s) 25, 448, 875
Bme1390I CCNGG 1 cut(s) 661
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 661
BmrI ACTGGG 2 cut(s) 406, 635
BmsI GCATC 2 cut(s) 346, 458
BmuI ACTGGG 2 cut(s) 406, 635
BpiI GAAGAC 1 cut(s) 22
Bpu10I CCTNAGC 1 cut(s) 357
Bpu1102I GCTNAGC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 661
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 111, 636
BsaWI WCCGGW 2 cut(s) 37, 697
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 715, 745
Bse1I ACTGG 4 cut(s) 316, 401, 630, 789
BseAI TCCGGA 1 cut(s) 37
BseDI CCNNGG 2 cut(s) 111, 636
BseGI GGATG 1 cut(s) 632
BseMII CTCAG 3 cut(s) 255, 348, 552
BseNI ACTGG 4 cut(s) 316, 401, 630, 789
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 433, 885
BshFI GGCC 4 cut(s) 26, 116, 269, 348
BsiSI CCGG 3 cut(s) 38, 660, 698
BslFI GGGAC 1 cut(s) 564
BsmAI GTCTC 4 cut(s) 253, 275, 333, 573
BsmFI GGGAC 1 cut(s) 564
BsnI GGCC 4 cut(s) 26, 116, 269, 348
Bso31I GGTCTC 1 cut(s) 333
Bsp13I TCCGGA 1 cut(s) 37
Bsp143I GATC 3 cut(s) 294, 532, 777
Bsp1720I GCTNAGC 1 cut(s) 241
BspACI CCGC 2 cut(s) 23, 126
BspANI GGCC 4 cut(s) 26, 116, 269, 348
BspCNI CTCAG 3 cut(s) 254, 349, 551
BspEI TCCGGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 333
BsrI ACTGG 4 cut(s) 316, 401, 630, 789
BssECI CCNNGG 2 cut(s) 111, 636
BssMI GATC 3 cut(s) 294, 532, 777
BssT1I CCWWGG 1 cut(s) 636
Bst4CI ACNGT 2 cut(s) 274, 307
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 4 cut(s) 241, 319, 357, 538
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 632
BstKTI GATC 3 cut(s) 297, 535, 780
BstMAI GTCTC 4 cut(s) 253, 275, 333, 573
BstMBI GATC 3 cut(s) 294, 532, 777
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 659
BstV1I GCAGC 2 cut(s) 433, 885
BstV2I GAAGAC 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 396
BsuRI GGCC 4 cut(s) 26, 116, 269, 348
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 632
BtsIMutI CAGTG 2 cut(s) 270, 622
Cac8I GCNNGC 1 cut(s) 335
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 406, 657
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 4 cut(s) 152, 298, 484, 817
CviQI GTAC 2 cut(s) 406, 657
DdeI CTNAG 4 cut(s) 241, 319, 357, 538
DpnI GATC 3 cut(s) 296, 534, 779
DpnII GATC 3 cut(s) 294, 532, 777
DraI TTTAAA 1 cut(s) 678
EaeI YGGCCR 2 cut(s) 114, 267
EciI GGCGGA 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 636
Eco31I GGTCTC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 4 cut(s) 155, 301, 487, 820
FaqI GGGAC 1 cut(s) 564
FatI CATG 4 cut(s) 151, 297, 483, 816
FbaI TGATCA 1 cut(s) 777
Fnu4HI GCNGC 3 cut(s) 24, 447, 874
FokI GGATG 1 cut(s) 619
Fsp4HI GCNGC 3 cut(s) 24, 447, 874
FspBI CTAG 4 cut(s) 210, 221, 599, 822
GluI GCNGC 3 cut(s) 24, 447, 874
HaeIII GGCC 4 cut(s) 26, 116, 269, 348
HapII CCGG 3 cut(s) 38, 660, 698
Hin1II CATG 4 cut(s) 155, 301, 487, 820
HinfI GANTC 4 cut(s) 67, 431, 581, 713
HpaII CCGG 3 cut(s) 38, 660, 698
HphI GGTGA 2 cut(s) 16, 437
Hpy166II GTNNAC 2 cut(s) 596, 657
Hpy188I TCNGA 2 cut(s) 66, 586
Hpy188III TCNNGA 6 cut(s) 38, 210, 278, 492, 717, 761
Hpy8I GTNNAC 2 cut(s) 596, 657
HpyAV CCTTC 3 cut(s) 359, 498, 742
HpyCH4III ACNGT 2 cut(s) 274, 307
HpyCH4IV ACGT 2 cut(s) 408, 774
HpyCH4V TGCA 3 cut(s) 32, 151, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 4 cut(s) 241, 319, 357, 538
HpySE526I ACGT 2 cut(s) 408, 774
Hsp92II CATG 4 cut(s) 155, 301, 487, 820
Kpn2I TCCGGA 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 3 cut(s) 294, 532, 777
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 2 cut(s) 433, 885
LweI GCATC 2 cut(s) 346, 458
MaeI CTAG 4 cut(s) 210, 221, 599, 822
MaeII ACGT 2 cut(s) 408, 774
MaeIII GTNAC 3 cut(s) 4, 301, 307
MalI GATC 3 cut(s) 296, 534, 779
MboI GATC 3 cut(s) 294, 532, 777
MboII GAAGA 6 cut(s) 27, 198, 440, 616, 868, 894
MluCI AATT 3 cut(s) 249, 508, 673
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 2 cut(s) 175, 758
MnlI CCTC 6 cut(s) 37, 102, 139, 191, 394, 450
MroI TCCGGA 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 3 cut(s) 393, 563, 677
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 3 cut(s) 38, 660, 698
MspR9I CCNGG 1 cut(s) 661
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 661
NdeII GATC 3 cut(s) 294, 532, 777
NlaIII CATG 4 cut(s) 155, 301, 487, 820
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 3 cut(s) 67, 431, 713
PkrI GCNGC 3 cut(s) 25, 448, 875
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PshBI ATTAAT 1 cut(s) 563
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 2 cut(s) 407, 658
RsaNI GTAC 2 cut(s) 406, 657
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 3 cut(s) 393, 563, 677
SatI GCNGC 3 cut(s) 24, 447, 874
Sau3AI GATC 3 cut(s) 294, 532, 777
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 661
SfaNI GCATC 2 cut(s) 346, 458
SinI GGWCC 1 cut(s) 40
SmiI ATTTAAAT 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SpeI ACTAGT 1 cut(s) 598
Sse9I AATT 3 cut(s) 249, 508, 673
SsiI CCGC 2 cut(s) 23, 126
SspMI CTAG 4 cut(s) 210, 221, 599, 822
StyD4I CCNGG 1 cut(s) 659
StyI CCWWGG 1 cut(s) 636
SwaI ATTTAAAT 1 cut(s) 678
TaaI ACNGT 2 cut(s) 274, 307
TaiI ACGT 2 cut(s) 411, 777
TaqI TCGA 1 cut(s) 94
TasI AATT 3 cut(s) 249, 508, 673
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 3 cut(s) 67, 431, 713
Tru1I TTAA 3 cut(s) 393, 563, 677
Tru9I TTAA 3 cut(s) 393, 563, 677
TscAI CASTG 2 cut(s) 277, 622
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 446, 873
Tsp45I GTSAC 1 cut(s) 4
TspGWI ACGGA 2 cut(s) 121, 797
TspRI CASTG 2 cut(s) 277, 622
VpaK11BI GGWCC 1 cut(s) 40
VspI ATTAAT 1 cut(s) 563
XapI RAATTY 2 cut(s) 249, 508
XbaI TCTAGA 1 cut(s) 209
XceI RCATGY 1 cut(s) 487
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 4 cut(s) 210, 221, 599, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.