RchiOBHm_Chr4g0407561

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010074
Physical Location & Seq
Forward (+)
29803865 .. 29806319
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37879

Sequence Viewer

Length: 861 bp
ATGGTGTCCACCAGAAGAACGTCGGCCTCTGCAACGCCGCCCCAACCTTATTCAAATACCCGAATCCTCAAAACCCCATTCTCTACCCCCAAAACCATCTCTACCTCCGTCAAATCGGTATTATTGGATGATTGGTGGCTGGTCAAGGCTCAAGGAAAGGGCTTGGCTGTCGAAGGCTTGGCTAAAACACAGAGACCAGCAATAAGAACTTTTAGCTCGGCAGCAATTTCAAAGAGACATACCGCCACAATTCTTGAGACAACAGATGGCATCATTGTTACACTCTGTGGTTTCTTAAATATCTCCCGCACAGGTCAAAATGGTTTTCCGCCCGAGGTATACAATCGCTATCTGCTTGGATTTCCATATGACTGGGAGGAGCATGCAGCTGGTTTATTGGTTCAAGGTTCTACTGACAAAAGTGCCTCAGCCAGAAATTCATCGTCTCAGAAGTTCATGTTTTCAGAAGACAGTGAAAGTAATCCGTTACCATTTTCTATAGCTGATGTCCCAGCGACAGTTACACGTGATTTTATAATGTCTTGTGTTGGAGATTCTGAACAATTGAAGACCATATTCGGTGATATACTGAGAACATCCGGGGACAATGTTTTTGGGGATACCACTCTGCAAATCAACTCAAACATGGAAGATAGTCATCCAATTGAAAATGTGAAATCTGGACGAAATGAAACACCCCCCATGGCTAAGAAGGTTCGGATTGATGATGACAAAAACAAGACTACAGACACATGTTTAAAAGGCAGCCAGAAATCTAAGGGAATGTGTTCCGGAAGAAACCAGACCAGCACGAAATCTGTACCCACAAGATCAAGCGCCAGGCTGAAGAATTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

286

Amino Acids

31.22

Weight (kDa)

9.41

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 40 - 127 6.4e-25 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58210 AT5G02520 AT5G02520 AT5G02520
fragaria_vesca FvH4_4g11320 FvH4_4g11320
malus_domestica MD04G1038200.v1.1
prunus_persica Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1
pyrus_communis pycom04g03110
rosa_chinensis RchiOBHm_Chr4g0407561
rosa_laevigata RLG00000008710
rosa_multiflora Rmu_sc0004841.1_g000004
rosa_roxburghii Rroxscaffold_5G00352180
rosa_rugosa Rorug04G0080400
rosa_samantha Rh4AG145100 Rh4BG143000 Rh4CG151800 Rh4DG139100
rosa_wichuraiana Rw4G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 536
AccI GTMKAC 1 cut(s) 339
AccIII TCCGGA 1 cut(s) 791
AciI CCGC 4 cut(s) 38, 243, 307, 329
AcsI RAATTY 2 cut(s) 436, 850
AcvI CACGTG 1 cut(s) 527
AdeI CACNNNGTG 1 cut(s) 287
AfaI GTAC 1 cut(s) 822
AflIII ACRYGT 2 cut(s) 524, 752
AgsI TTSAA 6 cut(s) 54, 231, 404, 568, 668, 856
AjnI CCWGG 1 cut(s) 839
AluBI AGCT 3 cut(s) 216, 389, 503
AluI AGCT 3 cut(s) 216, 389, 503
Alw26I GTCTC 4 cut(s) 187, 229, 251, 450
Ama87I CYCGRG 1 cut(s) 332
Aor13HI TCCGGA 1 cut(s) 791
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 221, 386, 765
ApoI RAATTY 2 cut(s) 436, 850
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
Asp700I GAANNNNTTC 1 cut(s) 787
AspLEI GCGC 1 cut(s) 839
AsuC2I CCSGG 1 cut(s) 601
AsuHPI GGTGA 1 cut(s) 593
AvaI CYCGRG 1 cut(s) 332
BbrPI CACGTG 1 cut(s) 527
BbsI GAAGAC 2 cut(s) 474, 575
BbvCI CCTCAGC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 233, 398, 777
BccI CCATC 2 cut(s) 104, 260
BciT130I CCWGG 1 cut(s) 841
BciVI GTATCC 1 cut(s) 613
BcnI CCSGG 1 cut(s) 601
BcoDI GTCTC 4 cut(s) 187, 229, 251, 450
BfmI CTRYAG 2 cut(s) 498, 744
BfoI RGCGCY 1 cut(s) 840
BfuI GTATCC 1 cut(s) 613
BisI GCNGC 4 cut(s) 38, 222, 387, 766
BlsI GCNGC 4 cut(s) 39, 223, 388, 767
Bme1390I CCNGG 2 cut(s) 601, 841
BmeT110I CYCGRG 1 cut(s) 332
BmrFI CCNGG 2 cut(s) 601, 841
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 474, 575
Bpu10I CCTNAGC 1 cut(s) 427
BpuEI CTTGAG 2 cut(s) 135, 275
BpuMI CCSGG 1 cut(s) 601
BsaAI YACGTR 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 3 cut(s) 333, 600, 702
BsaWI WCCGGW 1 cut(s) 791
Bse1I ACTGG 1 cut(s) 377
Bse8I GATNNNNATC 1 cut(s) 657
BseAI TCCGGA 1 cut(s) 791
BseBI CCWGG 1 cut(s) 841
BseDI CCNNGG 3 cut(s) 333, 600, 702
BseGI GGATG 3 cut(s) 133, 596, 658
BseJI GATNNNNATC 1 cut(s) 657
BseMII CTCAG 3 cut(s) 441, 461, 581
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 233, 398, 777
BseYI CCCAGC 1 cut(s) 511
BshFI GGCC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 2 cut(s) 600, 792
BslFI GGGAC 2 cut(s) 494, 617
BsmAI GTCTC 4 cut(s) 187, 229, 251, 450
BsmBI CGTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 494, 617
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 332
Bsp13I TCCGGA 1 cut(s) 791
Bsp143I GATC 1 cut(s) 830
Bsp19I CCATGG 1 cut(s) 702
BspACI CCGC 4 cut(s) 38, 243, 307, 329
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 440, 460, 582
BspEI TCCGGA 1 cut(s) 791
BspTNI GGTCTC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 333, 600, 702
BssMI GATC 1 cut(s) 830
BssNAI GTATAC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 702
Bst1107I GTATAC 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 841
Bst4CI ACNGT 2 cut(s) 473, 520
BstBAI YACGTR 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 427, 447, 590, 708, 777
BstDSI CCRYGG 1 cut(s) 702
BstF5I GGATG 3 cut(s) 133, 596, 658
BstH2I RGCGCY 1 cut(s) 840
BstHHI GCGC 1 cut(s) 839
BstKTI GATC 1 cut(s) 833
BstMAI GTCTC 4 cut(s) 187, 229, 251, 450
BstMBI GATC 1 cut(s) 830
BstNI CCWGG 1 cut(s) 841
BstNSI RCATGY 2 cut(s) 386, 756
BstSCI CCNGG 2 cut(s) 599, 839
BstSFI CTRYAG 2 cut(s) 498, 744
BstV1I GCAGC 3 cut(s) 233, 398, 777
BstV2I GAAGAC 2 cut(s) 474, 575
BstXI CCANNNNNNTGG 1 cut(s) 372
BstZ17I GTATAC 1 cut(s) 340
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 702
BtsCI GGATG 3 cut(s) 133, 596, 658
BtsIMutI CAGTG 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 384
CfoI GCGC 1 cut(s) 839
Csp6I GTAC 1 cut(s) 821
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 5 cut(s) 383, 457, 646, 703, 753
CviQI GTAC 1 cut(s) 821
DdeI CTNAG 5 cut(s) 427, 447, 590, 708, 777
DpnI GATC 1 cut(s) 832
DpnII GATC 1 cut(s) 830
DraI TTTAAA 1 cut(s) 759
DraIII CACNNNGTG 1 cut(s) 287
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 702
Eco31I GGTCTC 1 cut(s) 187
Eco72I CACGTG 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 839
EcoT14I CCWWGG 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 702
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 5 cut(s) 386, 460, 649, 706, 756
FaqI GGGAC 2 cut(s) 494, 617
FatI CATG 5 cut(s) 382, 456, 645, 702, 752
FauI CCCGC 1 cut(s) 314
FauNDI CATATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 38, 222, 387, 766
FokI GGATG 3 cut(s) 140, 583, 645
Fsp4HI GCNGC 4 cut(s) 38, 222, 387, 766
GlaI GCGC 1 cut(s) 838
GluI GCNGC 4 cut(s) 38, 222, 387, 766
GsaI CCCAGC 1 cut(s) 515
HaeII RGCGCY 1 cut(s) 840
HaeIII GGCC 1 cut(s) 26
HapII CCGG 2 cut(s) 600, 792
HhaI GCGC 1 cut(s) 839
Hin1II CATG 5 cut(s) 386, 460, 649, 706, 756
Hin6I GCGC 1 cut(s) 837
HinP1I GCGC 1 cut(s) 837
HinfI GANTC 2 cut(s) 63, 554
HpaII CCGG 2 cut(s) 600, 792
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 2 cut(s) 9, 340
Hpy188I TCNGA 4 cut(s) 450, 466, 559, 720
Hpy188III TCNNGA 3 cut(s) 254, 681, 792
Hpy8I GTNNAC 2 cut(s) 9, 340
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 167, 706
HpyCH4III ACNGT 2 cut(s) 473, 520
HpyCH4IV ACGT 2 cut(s) 20, 526
HpyCH4V TGCA 3 cut(s) 32, 386, 631
HpyF3I CTNAG 5 cut(s) 427, 447, 590, 708, 777
HpySE526I ACGT 2 cut(s) 20, 526
Hsp92II CATG 5 cut(s) 386, 460, 649, 706, 756
HspAI GCGC 1 cut(s) 837
Kpn2I TCCGGA 1 cut(s) 791
Kzo9I GATC 1 cut(s) 830
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 3 cut(s) 233, 398, 777
LweI GCATC 1 cut(s) 279
MaeII ACGT 2 cut(s) 20, 526
MaeIII GTNAC 3 cut(s) 277, 486, 520
MalI GATC 1 cut(s) 832
MboI GATC 1 cut(s) 830
MboII GAAGA 6 cut(s) 27, 479, 580, 662, 807, 859
MfeI CAATTG 2 cut(s) 563, 663
MluCI AATT 6 cut(s) 225, 249, 436, 563, 663, 850
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 6 cut(s) 37, 77, 115, 328, 370, 436
MroI TCCGGA 1 cut(s) 791
MroXI GAANNNNTTC 1 cut(s) 787
MseI TTAA 2 cut(s) 296, 758
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 2 cut(s) 600, 792
MspR9I CCNGG 2 cut(s) 601, 841
MunI CAATTG 2 cut(s) 563, 663
MvaI CCWGG 1 cut(s) 841
NciI CCSGG 1 cut(s) 601
NcoI CCATGG 1 cut(s) 702
NdeI CATATG 1 cut(s) 367
NdeII GATC 1 cut(s) 830
NlaIII CATG 5 cut(s) 386, 460, 649, 706, 756
NmeAIII GCCGAG 1 cut(s) 197
NspI RCATGY 2 cut(s) 386, 756
PaeI GCATGC 1 cut(s) 386
PciI ACATGT 1 cut(s) 752
PdmI GAANNNNTTC 1 cut(s) 787
PfeI GAWTC 2 cut(s) 63, 554
PkrI GCNGC 4 cut(s) 39, 223, 388, 767
PmaCI CACGTG 1 cut(s) 527
PmlI CACGTG 1 cut(s) 527
Ppu21I YACGTR 1 cut(s) 527
PscI ACATGT 1 cut(s) 752
PsiI TTATAA 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 839
PspCI CACGTG 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 511
PspGI CCWGG 1 cut(s) 839
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 822
RsaNI GTAC 1 cut(s) 821
SaqAI TTAA 2 cut(s) 296, 758
SatI GCNGC 4 cut(s) 38, 222, 387, 766
Sau3AI GATC 1 cut(s) 830
ScrFI CCNGG 2 cut(s) 601, 841
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 2 cut(s) 498, 744
SmlI CTYRAG 2 cut(s) 150, 254
SmoI CTYRAG 2 cut(s) 150, 254
SphI GCATGC 1 cut(s) 386
Sse9I AATT 6 cut(s) 225, 249, 436, 563, 663, 850
SsiI CCGC 4 cut(s) 38, 243, 307, 329
StyD4I CCNGG 2 cut(s) 599, 839
StyI CCWWGG 1 cut(s) 702
TaaI ACNGT 2 cut(s) 473, 520
TaiI ACGT 2 cut(s) 23, 529
TaqI TCGA 1 cut(s) 171
TasI AATT 6 cut(s) 225, 249, 436, 563, 663, 850
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 63, 554
Tru1I TTAA 2 cut(s) 296, 758
Tru9I TTAA 2 cut(s) 296, 758
TscAI CASTG 1 cut(s) 478
TseI GCWGC 3 cut(s) 221, 386, 765
TspDTI ATGAA 3 cut(s) 429, 445, 705
TspGWI ACGGA 2 cut(s) 97, 474
TspRI CASTG 1 cut(s) 478
XapI RAATTY 2 cut(s) 436, 850
XceI RCATGY 2 cut(s) 386, 756
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.