Rw4G011790

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0010074
Physical Location & Seq
Forward (+)
27942215 .. 27944808
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G011790.1

Sequence Viewer

Length: 867 bp
ATGGTGTCCACCAGAAGAGCGTCGGCCTCTGCAACGCCGCCCCAACCTTATTCAAATACCCGAATCCTCAAAACCCCATTTTCTACCCCCAAAACCATCTCTGCCTCCGTCAAATCGGTATTATTGGATGATTGGTGGCTGGTCAAGGCTCAAGGAACGGGCTTGGCTGTCGAAGGCTTGGCTAAACAACAGAGACCAGCAATAAGAACTTTTAGCTCGGCAGCAATTTCAAAGAGACATACCGCCACAATTCTTGAGACAACAGATGGCATCATTGTTACACTCTGTGGTTTCTTAAATATCTCCCGCACAGGTCAAAATGGTTTTCCGCCCGAGGTATACAATCGCTTTCAGCTTGGATTTCCATATGACTGGGAGGAGCATGCAGCTGGTTTATTGGTTCAAGGTTCTACTGACAAAAGTGCCTCAGCCAGAAATTCATCGTCTCAGAAGTTCAACATGTTTTTAGAAGACAGTGAAAGCAATCCGTTACCATTTTCTATAGCTGATGTCCCAGCCACTGTTACACGTGATTTTATAATGTCTTGTGTTGGAGATTCTGAACAATTGAAGACCATTTACAGTGATATACTGAGAACATCCGGGGACAATGTTTTTGGGGATACCACTCCGCAAATCAACTTAAACATGGAAGATAGTCATCCAGTTGAAAATGTGAAATCTGGACAAAATGAAACACCAACCATGGCTAAGAAGGTTCAGATTGACGATGACATAAACAAGACTACAGGCACATGTTTGAAAGGCAGCCAGAAATCTAAGAAGGGAATGTATTCCGGAAGAAACCAGACCAGCACGAAATCTGTACCCACAAGATCAAGCACCAGGCTGAAGAATTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

288

Amino Acids

31.44

Weight (kDa)

9.28

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 40 - 127 1.9e-25 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58210 AT5G02520 AT5G02520 AT5G02520
fragaria_vesca FvH4_4g11320 FvH4_4g11320
malus_domestica MD04G1038200.v1.1
prunus_persica Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1
pyrus_communis pycom04g03110
rosa_chinensis RchiOBHm_Chr4g0407561
rosa_laevigata RLG00000008710
rosa_multiflora Rmu_sc0004841.1_g000004
rosa_roxburghii Rroxscaffold_5G00352180
rosa_rugosa Rorug04G0080400
rosa_samantha Rh4AG145100 Rh4BG143000 Rh4CG151800 Rh4DG139100
rosa_wichuraiana Rw4G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AccI GTMKAC 1 cut(s) 339
AccIII TCCGGA 1 cut(s) 797
AciI CCGC 5 cut(s) 38, 243, 307, 329, 632
AcsI RAATTY 2 cut(s) 436, 856
AcvI CACGTG 1 cut(s) 530
AdeI CACNNNGTG 1 cut(s) 287
AfaI GTAC 1 cut(s) 828
AflIII ACRYGT 3 cut(s) 459, 527, 755
AgsI TTSAA 8 cut(s) 54, 231, 404, 457, 571, 671, 763, 862
AjnI CCWGG 1 cut(s) 845
AluBI AGCT 4 cut(s) 216, 355, 389, 506
AluI AGCT 4 cut(s) 216, 355, 389, 506
Alw26I GTCTC 4 cut(s) 187, 229, 251, 450
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 332
Aor13HI TCCGGA 1 cut(s) 797
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 221, 386, 768
ApoI RAATTY 2 cut(s) 436, 856
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
Asp700I GAANNNNTTC 1 cut(s) 793
AsuC2I CCSGG 1 cut(s) 604
AvaI CYCGRG 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 563, 595
BbrPI CACGTG 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 477, 578
BbvCI CCTCAGC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 233, 398, 780
BccI CCATC 2 cut(s) 104, 260
BciT130I CCWGG 1 cut(s) 847
BciVI GTATCC 1 cut(s) 616
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 4 cut(s) 187, 229, 251, 450
BfmI CTRYAG 2 cut(s) 501, 747
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 4 cut(s) 38, 222, 387, 769
BlsI GCNGC 4 cut(s) 39, 223, 388, 770
Bme1390I CCNGG 2 cut(s) 604, 847
BmeT110I CYCGRG 1 cut(s) 332
BmrFI CCNGG 2 cut(s) 604, 847
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 477, 578
Bpu10I CCTNAGC 1 cut(s) 427
BpuEI CTTGAG 2 cut(s) 135, 275
BpuMI CCSGG 1 cut(s) 604
BsaAI YACGTR 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 660
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 3 cut(s) 333, 603, 705
BsaWI WCCGGW 1 cut(s) 797
Bse1I ACTGG 2 cut(s) 377, 665
Bse8I GATNNNNATC 1 cut(s) 660
BseAI TCCGGA 1 cut(s) 797
BseBI CCWGG 1 cut(s) 847
BseDI CCNNGG 3 cut(s) 333, 603, 705
BseGI GGATG 3 cut(s) 133, 599, 661
BseJI GATNNNNATC 1 cut(s) 660
BseMII CTCAG 3 cut(s) 441, 461, 584
BseNI ACTGG 2 cut(s) 377, 665
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 233, 398, 780
BseYI CCCAGC 1 cut(s) 514
BshFI GGCC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 2 cut(s) 603, 798
BslFI GGGAC 2 cut(s) 497, 620
BsmAI GTCTC 4 cut(s) 187, 229, 251, 450
BsmBI CGTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 497, 620
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 332
Bsp13I TCCGGA 1 cut(s) 797
Bsp143I GATC 1 cut(s) 836
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 5 cut(s) 38, 243, 307, 329, 632
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 440, 460, 585
BspEI TCCGGA 1 cut(s) 797
BspQI GCTCTTC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 187
BsrI ACTGG 2 cut(s) 377, 665
BssECI CCNNGG 3 cut(s) 333, 603, 705
BssMI GATC 1 cut(s) 836
BssNAI GTATAC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 705
Bst1107I GTATAC 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 847
Bst4CI ACNGT 3 cut(s) 476, 523, 584
Bst6I CTCTTC 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 427, 447, 593, 711, 780
BstDSI CCRYGG 1 cut(s) 705
BstF5I GGATG 3 cut(s) 133, 599, 661
BstKTI GATC 1 cut(s) 839
BstMAI GTCTC 4 cut(s) 187, 229, 251, 450
BstMBI GATC 1 cut(s) 836
BstNI CCWGG 1 cut(s) 847
BstNSI RCATGY 3 cut(s) 386, 463, 759
BstSCI CCNGG 2 cut(s) 602, 845
BstSFI CTRYAG 2 cut(s) 501, 747
BstV1I GCAGC 3 cut(s) 233, 398, 780
BstV2I GAAGAC 2 cut(s) 477, 578
BstXI CCANNNNNNTGG 1 cut(s) 372
BstZ17I GTATAC 1 cut(s) 340
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 705
BtsCI GGATG 3 cut(s) 133, 599, 661
BtsIMutI CAGTG 3 cut(s) 481, 519, 589
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 521
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 827
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 5 cut(s) 383, 460, 649, 706, 756
CviQI GTAC 1 cut(s) 827
DdeI CTNAG 5 cut(s) 427, 447, 593, 711, 780
DpnI GATC 1 cut(s) 838
DpnII GATC 1 cut(s) 836
DraIII CACNNNGTG 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 187
Eco72I CACGTG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 845
EcoT14I CCWWGG 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 705
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 5 cut(s) 386, 463, 652, 709, 759
FaqI GGGAC 2 cut(s) 497, 620
FatI CATG 5 cut(s) 382, 459, 648, 705, 755
FauI CCCGC 1 cut(s) 314
FauNDI CATATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 38, 222, 387, 769
FokI GGATG 3 cut(s) 140, 586, 648
Fsp4HI GCNGC 4 cut(s) 38, 222, 387, 769
GluI GCNGC 4 cut(s) 38, 222, 387, 769
GsaI CCCAGC 1 cut(s) 518
HaeIII GGCC 1 cut(s) 26
HapII CCGG 2 cut(s) 603, 798
HgaI GACGC 1 cut(s) 9
Hin1II CATG 5 cut(s) 386, 463, 652, 709, 759
HinfI GANTC 2 cut(s) 63, 557
HpaII CCGG 2 cut(s) 603, 798
Hpy166II GTNNAC 2 cut(s) 9, 340
Hpy188I TCNGA 3 cut(s) 450, 562, 723
Hpy188III TCNNGA 3 cut(s) 254, 684, 798
Hpy8I GTNNAC 2 cut(s) 9, 340
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 167, 709, 778
HpyCH4III ACNGT 3 cut(s) 476, 523, 584
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 2 cut(s) 32, 386
HpyF3I CTNAG 5 cut(s) 427, 447, 593, 711, 780
HpySE526I ACGT 1 cut(s) 529
Hsp92II CATG 5 cut(s) 386, 463, 652, 709, 759
Kpn2I TCCGGA 1 cut(s) 797
Kzo9I GATC 1 cut(s) 836
LguI GCTCTTC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 3 cut(s) 233, 398, 780
LweI GCATC 1 cut(s) 279
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 3 cut(s) 277, 489, 523
MalI GATC 1 cut(s) 838
MboI GATC 1 cut(s) 836
MboII GAAGA 6 cut(s) 27, 482, 583, 665, 813, 865
MfeI CAATTG 1 cut(s) 566
MluCI AATT 5 cut(s) 225, 249, 436, 566, 856
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 6 cut(s) 37, 77, 115, 328, 370, 436
MroI TCCGGA 1 cut(s) 797
MroXI GAANNNNTTC 1 cut(s) 793
MseI TTAA 2 cut(s) 296, 644
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 2 cut(s) 603, 798
MspR9I CCNGG 2 cut(s) 604, 847
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 847
NciI CCSGG 1 cut(s) 604
NcoI CCATGG 1 cut(s) 705
NdeI CATATG 1 cut(s) 367
NdeII GATC 1 cut(s) 836
NlaIII CATG 5 cut(s) 386, 463, 652, 709, 759
NmeAIII GCCGAG 1 cut(s) 197
NspI RCATGY 3 cut(s) 386, 463, 759
PaeI GCATGC 1 cut(s) 386
PciI ACATGT 2 cut(s) 459, 755
PciSI GCTCTTC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 793
PfeI GAWTC 2 cut(s) 63, 557
PkrI GCNGC 4 cut(s) 39, 223, 388, 770
PmaCI CACGTG 1 cut(s) 530
PmlI CACGTG 1 cut(s) 530
Ppu21I YACGTR 1 cut(s) 530
PscI ACATGT 2 cut(s) 459, 755
PsiI TTATAA 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 845
PspCI CACGTG 1 cut(s) 530
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 845
PstNI CAGNNNCTG 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 828
RsaNI GTAC 1 cut(s) 827
SapI GCTCTTC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 296, 644
SatI GCNGC 4 cut(s) 38, 222, 387, 769
Sau3AI GATC 1 cut(s) 836
ScrFI CCNGG 2 cut(s) 604, 847
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 2 cut(s) 501, 747
SmlI CTYRAG 2 cut(s) 150, 254
SmoI CTYRAG 2 cut(s) 150, 254
SphI GCATGC 1 cut(s) 386
Sse9I AATT 5 cut(s) 225, 249, 436, 566, 856
SsiI CCGC 5 cut(s) 38, 243, 307, 329, 632
StyD4I CCNGG 2 cut(s) 602, 845
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 3 cut(s) 476, 523, 584
TaiI ACGT 1 cut(s) 532
TaqI TCGA 1 cut(s) 171
TasI AATT 5 cut(s) 225, 249, 436, 566, 856
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 63, 557
Tru1I TTAA 2 cut(s) 296, 644
Tru9I TTAA 2 cut(s) 296, 644
TscAI CASTG 3 cut(s) 481, 526, 589
TseI GCWGC 3 cut(s) 221, 386, 768
TspDTI ATGAA 2 cut(s) 429, 708
TspGWI ACGGA 2 cut(s) 97, 477
TspRI CASTG 3 cut(s) 481, 526, 589
XapI RAATTY 2 cut(s) 436, 856
XceI RCATGY 3 cut(s) 386, 463, 759
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.