Rh4BG143000

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0010074
Physical Location & Seq
Forward (+)
25397193 .. 25399425
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG143000.1

Sequence Viewer

Length: 867 bp
ATGGTGTCCACCAGAAGAACGTCGGCCTCTGCAACGCCGCCCCAACGTTATTCAAATACCCGAATCCTCAAAACCCCATTTTCTACCCCCAAAACCATCTCTGCCTGCGTCAAATCGGTATTATTGGATGATTGGTGGCTGGTCAAGGCTCAAGGAAAGGGCTTGGCTGTTGAAGGCTTGGCTAAAACACAGAGACCTGCAATAAGAACTTTTAGCTCGGCAGCAATTTCAAAGAGACATACTGCCACAATTCTTGAGACAACAGATGGCATCATTGTTACACTCTGTGGTTTTTTAAATATCTCCCGCACAAGTCAAAATGGTTTTCCGCCTGAGGTATACAATCGCTATCTGCTTGGATTTCCATATGACTGGGAGGAGCATGCAGCTGGTTTATTGGTTCAAGGTTCTACTGACAAAAGTGCCTCAGCCAGAAATTCATCGTCTCAGAAGTTCAACATGTTTTTAGAAGACAGTGAAAGTAATCCGTTACCATTTTCTATAGCTGATGTCCCAGCGACAGTTACACGTGATTTTATAATGTCTTGTGTTGGAGATTCTGAACAATTGAAGACCATATTCGGTGATATACTGAAAACATCCGGGGACAATGTTTTTGGGGATACCACTCCACAAATCAACTCAAACATGGAAGATAGTCATCCAATTGAAAATGTGAAATCTGGACGAAATGAAACACCCACCATGGCTAAGAAGGTTCGGATTGATGATGACAAAAACAAGACTACAGACACATGTTTAAAAGGCAGCCAGAAATCTAAGAAGGGAATGTGTTCCAGAAGAAACCAGACCAGCACGAAATCTGTACCCACAAGATCAAGCGCCAGGCTGAAGAATTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

288

Amino Acids

31.63

Weight (kDa)

9.55

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 40 - 127 2.4e-25 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58210 AT5G02520 AT5G02520 AT5G02520
fragaria_vesca FvH4_4g11320 FvH4_4g11320
malus_domestica MD04G1038200.v1.1
prunus_persica Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1
pyrus_communis pycom04g03110
rosa_chinensis RchiOBHm_Chr4g0407561
rosa_laevigata RLG00000008710
rosa_multiflora Rmu_sc0004841.1_g000004
rosa_roxburghii Rroxscaffold_5G00352180
rosa_rugosa Rorug04G0080400
rosa_samantha Rh4AG145100 Rh4BG143000 Rh4CG151800 Rh4DG139100
rosa_wichuraiana Rw4G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
Acc36I ACCTGC 1 cut(s) 205
AccI GTMKAC 1 cut(s) 339
AciI CCGC 3 cut(s) 38, 307, 329
AclI AACGTT 1 cut(s) 46
AcsI RAATTY 2 cut(s) 436, 856
AcvI CACGTG 1 cut(s) 530
AdeI CACNNNGTG 1 cut(s) 287
AfaI GTAC 1 cut(s) 828
AflIII ACRYGT 3 cut(s) 459, 527, 755
AgsI TTSAA 8 cut(s) 54, 173, 231, 404, 457, 571, 671, 862
AjnI CCWGG 1 cut(s) 845
AluBI AGCT 3 cut(s) 216, 389, 506
AluI AGCT 3 cut(s) 216, 389, 506
Alw26I GTCTC 4 cut(s) 187, 229, 251, 450
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 221, 386, 768
ApoI RAATTY 2 cut(s) 436, 856
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
Asp700I GAANNNNTTC 1 cut(s) 793
AspLEI GCGC 1 cut(s) 845
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 1 cut(s) 596
AxyI CCTNAGG 1 cut(s) 333
BbrPI CACGTG 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 477, 578
BbvCI CCTCAGC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 233, 398, 780
BccI CCATC 2 cut(s) 104, 260
BciT130I CCWGG 1 cut(s) 847
BciVI GTATCC 1 cut(s) 616
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 4 cut(s) 187, 229, 251, 450
BfmI CTRYAG 2 cut(s) 501, 747
BfoI RGCGCY 1 cut(s) 846
BfuAI ACCTGC 1 cut(s) 205
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 4 cut(s) 38, 222, 387, 769
BlsI GCNGC 4 cut(s) 39, 223, 388, 770
Bme1390I CCNGG 2 cut(s) 604, 847
BmrFI CCNGG 2 cut(s) 604, 847
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 477, 578
Bpu10I CCTNAGC 1 cut(s) 427
BpuEI CTTGAG 2 cut(s) 135, 275
BpuMI CCSGG 1 cut(s) 604
BsaAI YACGTR 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 660
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 603, 705
Bse1I ACTGG 1 cut(s) 377
Bse21I CCTNAGG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 1 cut(s) 847
BseDI CCNNGG 2 cut(s) 603, 705
BseGI GGATG 3 cut(s) 133, 599, 661
BseJI GATNNNNATC 1 cut(s) 660
BseMII CTCAG 3 cut(s) 324, 441, 461
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 233, 398, 780
BseYI CCCAGC 1 cut(s) 514
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 603
BslFI GGGAC 2 cut(s) 497, 620
BsmAI GTCTC 4 cut(s) 187, 229, 251, 450
BsmBI CGTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 497, 620
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 836
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 3 cut(s) 38, 307, 329
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 325, 440, 460
BspMI ACCTGC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 603, 705
BssMI GATC 1 cut(s) 836
BssNAI GTATAC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 705
Bst1107I GTATAC 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 847
Bst4CI ACNGT 2 cut(s) 476, 523
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 106, 384
BstDEI CTNAG 5 cut(s) 333, 427, 447, 711, 780
BstDSI CCRYGG 1 cut(s) 705
BstF5I GGATG 3 cut(s) 133, 599, 661
BstH2I RGCGCY 1 cut(s) 846
BstHHI GCGC 1 cut(s) 845
BstKTI GATC 1 cut(s) 839
BstMAI GTCTC 4 cut(s) 187, 229, 251, 450
BstMBI GATC 1 cut(s) 836
BstNI CCWGG 1 cut(s) 847
BstNSI RCATGY 3 cut(s) 386, 463, 759
BstSCI CCNGG 2 cut(s) 602, 845
BstSFI CTRYAG 2 cut(s) 501, 747
BstV1I GCAGC 3 cut(s) 233, 398, 780
BstV2I GAAGAC 2 cut(s) 477, 578
BstXI CCANNNNNNTGG 1 cut(s) 372
BstZ17I GTATAC 1 cut(s) 340
Bsu36I CCTNAGG 1 cut(s) 333
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 705
BtsCI GGATG 3 cut(s) 133, 599, 661
BtsIMutI CAGTG 1 cut(s) 481
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 106, 384
CfoI GCGC 1 cut(s) 845
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 827
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 5 cut(s) 383, 460, 649, 706, 756
CviQI GTAC 1 cut(s) 827
DdeI CTNAG 5 cut(s) 333, 427, 447, 711, 780
DpnI GATC 1 cut(s) 838
DpnII GATC 1 cut(s) 836
DraI TTTAAA 2 cut(s) 297, 762
DraIII CACNNNGTG 1 cut(s) 287
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 187
Eco72I CACGTG 1 cut(s) 530
Eco81I CCTNAGG 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 845
EcoT14I CCWWGG 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 705
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 5 cut(s) 386, 463, 652, 709, 759
FaqI GGGAC 2 cut(s) 497, 620
FatI CATG 5 cut(s) 382, 459, 648, 705, 755
FauI CCCGC 1 cut(s) 314
FauNDI CATATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 38, 222, 387, 769
FokI GGATG 3 cut(s) 140, 586, 648
Fsp4HI GCNGC 4 cut(s) 38, 222, 387, 769
GlaI GCGC 1 cut(s) 844
GluI GCNGC 4 cut(s) 38, 222, 387, 769
GsaI CCCAGC 1 cut(s) 518
HaeII RGCGCY 1 cut(s) 846
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 603
HgaI GACGC 1 cut(s) 97
HhaI GCGC 1 cut(s) 845
Hin1II CATG 5 cut(s) 386, 463, 652, 709, 759
Hin6I GCGC 1 cut(s) 843
HinP1I GCGC 1 cut(s) 843
HinfI GANTC 2 cut(s) 63, 557
HpaII CCGG 1 cut(s) 603
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 2 cut(s) 9, 340
Hpy188I TCNGA 3 cut(s) 450, 562, 723
Hpy188III TCNNGA 3 cut(s) 254, 684, 798
Hpy8I GTNNAC 2 cut(s) 9, 340
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 167, 709, 778
HpyCH4III ACNGT 2 cut(s) 476, 523
HpyCH4IV ACGT 3 cut(s) 20, 46, 529
HpyCH4V TGCA 3 cut(s) 32, 200, 386
HpyF3I CTNAG 5 cut(s) 333, 427, 447, 711, 780
HpySE526I ACGT 3 cut(s) 20, 46, 529
Hsp92II CATG 5 cut(s) 386, 463, 652, 709, 759
HspAI GCGC 1 cut(s) 843
Kzo9I GATC 1 cut(s) 836
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 3 cut(s) 233, 398, 780
LweI GCATC 1 cut(s) 279
MaeII ACGT 3 cut(s) 20, 46, 529
MaeIII GTNAC 3 cut(s) 277, 489, 523
MalI GATC 1 cut(s) 838
MboI GATC 1 cut(s) 836
MboII GAAGA 6 cut(s) 27, 482, 583, 665, 813, 865
MfeI CAATTG 2 cut(s) 566, 666
MluCI AATT 6 cut(s) 225, 249, 436, 566, 666, 856
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 5 cut(s) 37, 77, 328, 370, 436
MroXI GAANNNNTTC 1 cut(s) 793
MseI TTAA 2 cut(s) 296, 761
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 2 cut(s) 604, 847
MunI CAATTG 2 cut(s) 566, 666
MvaI CCWGG 1 cut(s) 847
NciI CCSGG 1 cut(s) 604
NcoI CCATGG 1 cut(s) 705
NdeI CATATG 1 cut(s) 367
NdeII GATC 1 cut(s) 836
NlaIII CATG 5 cut(s) 386, 463, 652, 709, 759
NmeAIII GCCGAG 1 cut(s) 197
NspI RCATGY 3 cut(s) 386, 463, 759
PaeI GCATGC 1 cut(s) 386
PciI ACATGT 2 cut(s) 459, 755
PdmI GAANNNNTTC 1 cut(s) 793
PfeI GAWTC 2 cut(s) 63, 557
PkrI GCNGC 4 cut(s) 39, 223, 388, 770
PmaCI CACGTG 1 cut(s) 530
PmlI CACGTG 1 cut(s) 530
Ppu21I YACGTR 1 cut(s) 530
PscI ACATGT 2 cut(s) 459, 755
PsiI TTATAA 1 cut(s) 539
Psp1406I AACGTT 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 845
PspCI CACGTG 1 cut(s) 530
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 845
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 828
RsaNI GTAC 1 cut(s) 827
SaqAI TTAA 2 cut(s) 296, 761
SatI GCNGC 4 cut(s) 38, 222, 387, 769
Sau3AI GATC 1 cut(s) 836
ScrFI CCNGG 2 cut(s) 604, 847
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 2 cut(s) 501, 747
SmlI CTYRAG 2 cut(s) 150, 254
SmoI CTYRAG 2 cut(s) 150, 254
SphI GCATGC 1 cut(s) 386
Sse9I AATT 6 cut(s) 225, 249, 436, 566, 666, 856
SsiI CCGC 3 cut(s) 38, 307, 329
StyD4I CCNGG 2 cut(s) 602, 845
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 2 cut(s) 476, 523
TaiI ACGT 3 cut(s) 23, 49, 532
TasI AATT 6 cut(s) 225, 249, 436, 566, 666, 856
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 63, 557
Tru1I TTAA 2 cut(s) 296, 761
Tru9I TTAA 2 cut(s) 296, 761
TscAI CASTG 1 cut(s) 481
TseI GCWGC 3 cut(s) 221, 386, 768
TspDTI ATGAA 2 cut(s) 429, 708
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 1 cut(s) 481
XapI RAATTY 2 cut(s) 436, 856
XceI RCATGY 3 cut(s) 386, 463, 759
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.