Rorug04G0080400

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004920
Physical Location & Seq
Reverse (-)
12238592 .. 12241082
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0080400.1

Sequence Viewer

Length: 1029 bp
ATGTTCCTGGACCAGTTCAAAAGGCAGGCCTCTCATTTTTTACAAGAGAGATACAAAACTGCTAGGCTGACATTCACCGATGTTACTCCTGCCGAACTGTGGGCTGAGGAGGCAACAAATGGTGAACCATGTAGCCCTGATGCCAAGACAATGACTAAAATAGCTGCTGCCTCCTTTGAGATGGAGGACTATTGGAGAATAGTTGACATCCTTCACAGAAAGTTATATAACATTGATTGGAAAGAATGGAGGCAATCCTACAAAGCATTGGTACTTCTGGAGTTTTTATTAACACATGGCCCTGAAGACTTTGCTGAAGAATTTCAAGGTGACAGTGAAGTCATCCAAGAGCTGGGATCATTTAAGTACATTGATGACAAAGGATTCAATTGGGGTTCTAGCATGCAAAAGAAATCGGACCAAATACTAATCCTTCTAAGAGGGGGGCCGACGCTGAGAGAAGCACGTTTCAAAGCTCTCAAATTAACAAATGAAATCCAAGGCTTTAGAGGTTCAGTGTCTTCTCCTTCACCCTCAACTCCTTCCTCTGCCTACTCTGAAACACCAAGAGCTTCATCCTTTAGTTCATTTTCTACCACAAGTTCTGTATGGAATGAATTGAACAATGAGCTTAGCAAATTTCATCAACCATCGACAACTAAATCAGAAGCCATGGAAAGCTATTCACAGGGTGGACTGCGAGACACTGATGATGATCATGATCATTACAAGAATACTAGCAATTTCCCCGCACCAAGTGAGAGTAGGGAAGGATCACACCTTTGGAATTGCCCTCCAATTGAAGAAAAAGGTTCATTACTTGAATCCGAAGAAGAAGACGATGAGGATGATGACAAATATTATGAGAAGGCGGATGGTATTTTAACTGGAATTTACTCTAAGCTGGTTAACCTTAGTCCTACAAGAGGAAATGGACCTCATGGTAATATTAGGTTTAGGAGTGTTTCTGATGTGGGGAGGGAGCTGAGGAAGAAAAAGCTTGATCGCCAATCTTCGTTTTGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

342

Amino Acids

39.12

Weight (kDa)

5.15

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 29 - 147 6.6e-30 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 352
AciI CCGC 2 cut(s) 750, 872
AclWI GGATC 2 cut(s) 364, 781
AcsI RAATTY 3 cut(s) 320, 638, 891
AcuI CTGAAG 2 cut(s) 324, 336
AdeI CACNNNGTG 2 cut(s) 692, 758
AfaI GTAC 3 cut(s) 273, 368, 1025
AfiI CCNNNNNNNGG 3 cut(s) 99, 352, 926
AgsI TTSAA 7 cut(s) 19, 326, 388, 472, 622, 803, 824
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 9 cut(s) 164, 352, 476, 572, 631, 681, 904, 985, 1000
AluI AGCT 9 cut(s) 164, 352, 476, 572, 631, 681, 904, 985, 1000
Alw26I GTCTC 1 cut(s) 696
AlwI GGATC 2 cut(s) 364, 781
AoxI GGCC 3 cut(s) 27, 298, 446
ApeKI GCWGC 2 cut(s) 164, 167
ApoI RAATTY 3 cut(s) 320, 638, 891
Asp700I GAANNNNTTC 1 cut(s) 321
AspS9I GGNCC 5 cut(s) 10, 299, 418, 446, 935
AsuHPI GGTGA 4 cut(s) 67, 134, 341, 522
AvaII GGWCC 3 cut(s) 10, 418, 935
BbsI GAAGAC 3 cut(s) 312, 513, 843
BbvCI CCTCAGC 2 cut(s) 105, 986
BbvI GCAGC 2 cut(s) 151, 154
BccI CCATC 3 cut(s) 175, 658, 869
BciT130I CCWGG 1 cut(s) 8
BclI TGATCA 2 cut(s) 715, 721
BcoDI GTCTC 1 cut(s) 696
BfaI CTAG 3 cut(s) 63, 399, 738
BisI GCNGC 2 cut(s) 165, 168
BlpI GCTNAGC 1 cut(s) 632
BlsI GCNGC 2 cut(s) 166, 169
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 3 cut(s) 10, 418, 935
BmgT120I GGNCC 5 cut(s) 10, 299, 418, 446, 935
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 3 cut(s) 312, 513, 843
BpmI CTGGAG 1 cut(s) 299
Bpu10I CCTNAGC 2 cut(s) 105, 986
Bpu1102I GCTNAGC 1 cut(s) 632
BsaBI GATNNNNATC 2 cut(s) 714, 720
BsaJI CCNNGG 2 cut(s) 499, 672
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 352, 926
Bse1I ACTGG 2 cut(s) 13, 892
Bse8I GATNNNNATC 2 cut(s) 714, 720
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 499, 672
BseGI GGATG 5 cut(s) 207, 342, 575, 853, 880
BseJI GATNNNNATC 2 cut(s) 714, 720
BseLI CCNNNNNNNGG 3 cut(s) 99, 352, 926
BseMII CTCAG 3 cut(s) 96, 446, 977
BseNI ACTGG 2 cut(s) 13, 892
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 151, 154
BseYI CCCAGC 1 cut(s) 352
BshFI GGCC 3 cut(s) 29, 300, 448
BslI CCNNNNNNNGG 3 cut(s) 99, 352, 926
BsmAI GTCTC 1 cut(s) 696
BsnI GGCC 3 cut(s) 29, 300, 448
Bsp143I GATC 5 cut(s) 356, 715, 721, 773, 1003
Bsp1720I GCTNAGC 1 cut(s) 632
Bsp19I CCATGG 1 cut(s) 672
BspACI CCGC 2 cut(s) 750, 872
BspANI GGCC 3 cut(s) 29, 300, 448
BspCNI CTCAG 3 cut(s) 97, 447, 978
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 1 cut(s) 447
BspPI GGATC 2 cut(s) 364, 781
BsrI ACTGG 2 cut(s) 13, 892
BssECI CCNNGG 2 cut(s) 499, 672
BssMI GATC 5 cut(s) 356, 715, 721, 773, 1003
BssT1I CCWWGG 2 cut(s) 499, 672
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 99, 335
BstC8I GCNNGC 2 cut(s) 27, 404
BstDEI CTNAG 7 cut(s) 105, 437, 455, 632, 900, 914, 986
BstDSI CCRYGG 1 cut(s) 672
BstENI CCTNNNNNAGG 1 cut(s) 924
BstF5I GGATG 5 cut(s) 207, 342, 575, 853, 880
BstKTI GATC 5 cut(s) 359, 718, 724, 776, 1006
BstMAI GTCTC 1 cut(s) 696
BstMBI GATC 5 cut(s) 356, 715, 721, 773, 1003
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 151, 154
BstV2I GAAGAC 3 cut(s) 312, 513, 843
BsuRI GGCC 3 cut(s) 29, 300, 448
BtgI CCRYGG 1 cut(s) 672
BtsCI GGATG 5 cut(s) 207, 342, 575, 853, 880
BtsIMutI CAGTG 3 cut(s) 340, 522, 705
Cac8I GCNNGC 2 cut(s) 27, 404
CciI TCATGA 1 cut(s) 718
Cfr13I GGNCC 5 cut(s) 10, 299, 418, 446, 935
CseI GACGC 1 cut(s) 460
Csp6I GTAC 3 cut(s) 272, 367, 1024
CviAII CATG 6 cut(s) 129, 296, 403, 673, 719, 941
CviQI GTAC 3 cut(s) 272, 367, 1024
DdeI CTNAG 7 cut(s) 105, 437, 455, 632, 900, 914, 986
DpnI GATC 5 cut(s) 358, 717, 723, 775, 1005
DpnII GATC 5 cut(s) 356, 715, 721, 773, 1003
DraIII CACNNNGTG 2 cut(s) 692, 758
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EciI GGCGGA 1 cut(s) 887
Eco130I CCWWGG 2 cut(s) 499, 672
Eco147I AGGCCT 1 cut(s) 29
Eco47I GGWCC 3 cut(s) 10, 418, 935
Eco57I CTGAAG 2 cut(s) 324, 336
EcoNI CCTNNNNNAGG 1 cut(s) 924
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 499, 672
ErhI CCWWGG 2 cut(s) 499, 672
FaeI CATG 6 cut(s) 132, 299, 406, 676, 722, 944
FatI CATG 6 cut(s) 128, 295, 402, 672, 718, 940
FauI CCCGC 1 cut(s) 757
FbaI TGATCA 2 cut(s) 715, 721
Fnu4HI GCNGC 2 cut(s) 165, 168
FokI GGATG 5 cut(s) 194, 329, 562, 860, 887
Fsp4HI GCNGC 2 cut(s) 165, 168
FspBI CTAG 3 cut(s) 63, 399, 738
GluI GCNGC 2 cut(s) 165, 168
GsaI CCCAGC 1 cut(s) 356
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 3 cut(s) 29, 300, 448
HgaI GACGC 1 cut(s) 460
Hin1II CATG 6 cut(s) 132, 299, 406, 676, 722, 944
HincII GTYRAC 2 cut(s) 205, 910
HindII GTYRAC 2 cut(s) 205, 910
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 2 cut(s) 384, 824
HpaI GTTAAC 1 cut(s) 910
HphI GGTGA 4 cut(s) 67, 134, 341, 522
Hpy166II GTNNAC 4 cut(s) 125, 205, 695, 910
Hpy188I TCNGA 5 cut(s) 418, 559, 667, 829, 970
Hpy188III TCNNGA 2 cut(s) 278, 719
Hpy8I GTNNAC 4 cut(s) 125, 205, 695, 910
Hpy99I CGWCG 1 cut(s) 454
HpyAV CCTTC 6 cut(s) 221, 443, 537, 552, 764, 862
HpyCH4III ACNGT 2 cut(s) 99, 335
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 1 cut(s) 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 7 cut(s) 105, 437, 455, 632, 900, 914, 986
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 6 cut(s) 132, 299, 406, 676, 722, 944
Ksp22I TGATCA 2 cut(s) 715, 721
KspAI GTTAAC 1 cut(s) 910
Kzo9I GATC 5 cut(s) 356, 715, 721, 773, 1003
LmnI GCTCC 1 cut(s) 982
Lsp1109I GCAGC 2 cut(s) 151, 154
LweI GCATC 1 cut(s) 130
MaeI CTAG 3 cut(s) 63, 399, 738
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 2 cut(s) 82, 329
MalI GATC 5 cut(s) 358, 717, 723, 775, 1005
MboI GATC 5 cut(s) 356, 715, 721, 773, 1003
MboII GAAGA 9 cut(s) 317, 329, 513, 815, 842, 845, 848, 1003, 1005
MfeI CAATTG 2 cut(s) 388, 798
MluCI AATT 9 cut(s) 320, 388, 482, 617, 638, 742, 787, 798, 891
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 5 cut(s) 290, 363, 485, 884, 909
MspR9I CCNGG 1 cut(s) 8
MunI CAATTG 2 cut(s) 388, 798
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 110
NcoI CCATGG 1 cut(s) 672
NdeII GATC 5 cut(s) 356, 715, 721, 773, 1003
NlaIII CATG 6 cut(s) 132, 299, 406, 676, 722, 944
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 1 cut(s) 406
PaeI GCATGC 1 cut(s) 406
PagI TCATGA 1 cut(s) 718
PceI AGGCCT 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 384, 824
PflMI CCANNNNNTGG 1 cut(s) 352
PfoI TCCNGGA 1 cut(s) 6
PkrI GCNGC 2 cut(s) 166, 169
Psp6I CCWGG 1 cut(s) 6
PspFI CCCAGC 1 cut(s) 352
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 447
PspPI GGNCC 5 cut(s) 10, 299, 418, 446, 935
RsaI GTAC 3 cut(s) 273, 368, 1025
RsaNI GTAC 3 cut(s) 272, 367, 1024
SaqAI TTAA 5 cut(s) 290, 363, 485, 884, 909
SatI GCNGC 2 cut(s) 165, 168
Sau3AI GATC 5 cut(s) 356, 715, 721, 773, 1003
Sau96I GGNCC 5 cut(s) 10, 299, 418, 446, 935
ScrFI CCNGG 1 cut(s) 8
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 3 cut(s) 10, 418, 935
SphI GCATGC 1 cut(s) 406
Sse9I AATT 9 cut(s) 320, 388, 482, 617, 638, 742, 787, 798, 891
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 2 cut(s) 750, 872
SspI AATATT 2 cut(s) 860, 949
SspMI CTAG 3 cut(s) 63, 399, 738
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 499, 672
TaaI ACNGT 2 cut(s) 99, 335
TaiI ACGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 653
TasI AATT 9 cut(s) 320, 388, 482, 617, 638, 742, 787, 798, 891
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 2 cut(s) 384, 824
Tru1I TTAA 5 cut(s) 290, 363, 485, 884, 909
Tru9I TTAA 5 cut(s) 290, 363, 485, 884, 909
TscAI CASTG 3 cut(s) 340, 522, 712
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 164, 167
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 6 cut(s) 507, 564, 576, 630, 632, 804
TspRI CASTG 3 cut(s) 340, 522, 712
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 3 cut(s) 10, 418, 935
XagI CCTNNNNNAGG 1 cut(s) 924
XapI RAATTY 3 cut(s) 320, 638, 891
XceI RCATGY 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 3 cut(s) 63, 399, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.