FvH4_4g11330

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004920
Physical Location & Seq
Reverse (-)
15098002 .. 15099255
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11330.t1

Sequence Viewer

Length: 582 bp
ATGCTTCATATTCTTAATCGAATCCCTTTGAATTCTGTTCTCATTTTCTGCGTTTATTGTTTGCACTTTGCAGTAAGTCGGTCCGCGAAAATGGTTTCCTTCGAGATGAATGATCGGAAAAAGATTGGACTGGGATTGACTGGATTTGGCATATTTTTCTCATTCCTGGGAATGGTTTTCTTCTTCGACAAGGGATTACTTGCAATGGGAAATATCCTCTTCTTCTCAGGGGTGACTCTAACCATTGGATTCAAGTCCACGATGCAATTCTTCATGAAACGTCAAAATTTTAAGGGGTCAATTTCTTTTGGTGTTGGATTCTTCTTTGTGCTCATAGGGTGGCCAATTGTGGGCATGCTTTTGGAGGCATATGGGTTCGTTGTACTCTTCAGTGGCTTCTGGCCAACATTGGCAGTTTTTCTGCAGAAGATTCCTATTCTGGGATGGGTTTTCCAACAGCCATATGTTAGATCGGTATGTTCAGTATGTTGTTGTTCAGCTGCAAATACATTTTTGTTTGTGTGGTTTTTATATGGTGATGTACATCTAGGCTTGTCAAAAGAGTTGGTTTCGCCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

194

Amino Acids

21.73

Weight (kDa)

9.41

Isoelectric Point (pI)

25.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 46 - 145 4.8e-13 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 84
AcoI YGGCCR 2 cut(s) 341, 401
AcsI RAATTY 2 cut(s) 31, 286
AcuI CTGAAG 1 cut(s) 373
AfaI GTAC 2 cut(s) 384, 543
AfiI CCNNNNNNNGG 3 cut(s) 172, 350, 440
AgsI TTSAA 2 cut(s) 31, 253
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 1 cut(s) 500
AluI AGCT 1 cut(s) 500
Alw21I GWGCWC 1 cut(s) 333
AoxI GGCC 2 cut(s) 341, 401
ApeKI GCWGC 1 cut(s) 500
ApoI RAATTY 2 cut(s) 31, 286
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 244, 548
AvaII GGWCC 1 cut(s) 81
BalI TGGCCA 2 cut(s) 343, 403
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 487
BccI CCATC 1 cut(s) 438
BciT130I CCWGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 1 cut(s) 422
BisI GCNGC 1 cut(s) 501
BlsI GCNGC 1 cut(s) 502
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 252
BmuI ACTGGG 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 350, 440
Bse1I ACTGG 2 cut(s) 135, 145
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 449
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 3 cut(s) 172, 350, 440
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 135, 145
BseXI GCAGC 1 cut(s) 487
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 2 cut(s) 343, 403
BsiHKAI GWGCWC 1 cut(s) 333
BslI CCNNNNNNNGG 3 cut(s) 172, 350, 440
BsnI GGCC 2 cut(s) 343, 403
Bsp1286I GDGCHC 1 cut(s) 333
Bsp1407I TGTACA 1 cut(s) 541
Bsp143I GATC 2 cut(s) 112, 470
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 343, 403
BspCNI CTCAG 1 cut(s) 239
BspFNI CGCG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 273
BspMAI CTGCAG 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 210
BsrGI TGTACA 1 cut(s) 541
BsrI ACTGG 2 cut(s) 135, 145
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 2 cut(s) 112, 470
Bst2UI CCWGG 1 cut(s) 167
Bst6I CTCTTC 2 cut(s) 224, 392
BstAUI TGTACA 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 449
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 2 cut(s) 115, 473
BstMBI GATC 2 cut(s) 112, 470
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 422
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 487
BsuRI GGCC 2 cut(s) 343, 403
BtsCI GGATG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 356
CciI TCATGA 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 81
CpoI CGGWCCG 1 cut(s) 81
Csp6I GTAC 2 cut(s) 383, 542
CspI CGGWCCG 1 cut(s) 81
CviAII CATG 2 cut(s) 274, 355
CviJI RGCY 6 cut(s) 343, 396, 403, 460, 500, 552
CviKI_1 RGCY 6 cut(s) 343, 396, 403, 460, 500, 552
CviQI GTAC 2 cut(s) 383, 542
DdeI CTNAG 1 cut(s) 226
DpnI GATC 2 cut(s) 114, 472
DpnII GATC 2 cut(s) 112, 470
EaeI YGGCCR 2 cut(s) 341, 401
Eam1104I CTCTTC 2 cut(s) 224, 392
EarI CTCTTC 2 cut(s) 224, 392
Eco47I GGWCC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 277, 358
FatI CATG 2 cut(s) 273, 354
FauNDI CATATG 2 cut(s) 370, 463
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 1 cut(s) 456
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 1 cut(s) 548
GluI GCNGC 1 cut(s) 501
HaeIII GGCC 2 cut(s) 343, 403
Hin1II CATG 2 cut(s) 277, 358
HinfI GANTC 5 cut(s) 21, 235, 249, 318, 430
HphI GGTGA 2 cut(s) 244, 548
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 103, 274
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 6 cut(s) 64, 71, 203, 265, 424, 503
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 2 cut(s) 277, 358
Kzo9I GATC 2 cut(s) 112, 470
LpnPI CCDG 7 cut(s) 116, 126, 152, 179, 213, 385, 425
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 1 cut(s) 252
MaeI CTAG 1 cut(s) 548
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 114, 472
MboI GATC 2 cut(s) 112, 470
MboII GAAGA 8 cut(s) 172, 175, 211, 214, 262, 313, 379, 439
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 333
MlsI TGGCCA 2 cut(s) 343, 403
MluCI AATT 5 cut(s) 31, 266, 286, 300, 345
MluNI TGGCCA 2 cut(s) 343, 403
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 2 cut(s) 295, 478
MnlI CCTC 2 cut(s) 227, 358
Mox20I TGGCCA 2 cut(s) 343, 403
MscI TGGCCA 2 cut(s) 343, 403
MseI TTAA 2 cut(s) 15, 291
Msp20I TGGCCA 2 cut(s) 343, 403
MspA1I CMGCKG 1 cut(s) 500
MspR9I CCNGG 1 cut(s) 167
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 86
NdeI CATATG 2 cut(s) 370, 463
NdeII GATC 2 cut(s) 112, 470
NlaIII CATG 2 cut(s) 277, 358
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 358
PaeI GCATGC 1 cut(s) 358
PagI TCATGA 1 cut(s) 273
PfeI GAWTC 4 cut(s) 21, 249, 318, 430
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspPI GGNCC 1 cut(s) 81
PstI CTGCAG 1 cut(s) 426
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 2 cut(s) 384, 543
RsaNI GTAC 2 cut(s) 383, 542
Rsr2I CGGWCCG 1 cut(s) 81
RsrII CGGWCCG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 15, 291
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 2 cut(s) 112, 470
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 333
SetI ASST 2 cut(s) 283, 502
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 422
SinI GGWCC 1 cut(s) 81
SphI GCATGC 1 cut(s) 358
Sse9I AATT 5 cut(s) 31, 266, 286, 300, 345
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 548
StyD4I CCNGG 1 cut(s) 165
TaiI ACGT 1 cut(s) 283
TaqI TCGA 3 cut(s) 19, 102, 186
TaqII GACCGA 1 cut(s) 69
TasI AATT 5 cut(s) 31, 266, 286, 300, 345
TatI WGTACW 2 cut(s) 382, 541
TfiI GAWTC 4 cut(s) 21, 249, 318, 430
Tru1I TTAA 2 cut(s) 15, 291
Tru9I TTAA 2 cut(s) 15, 291
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 122, 262, 290
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 2 cut(s) 31, 286
XceI RCATGY 1 cut(s) 358
XspI CTAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.