AT5G01430

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004920
Physical Location & Seq
Reverse (-)
176388 .. 178654
2267 bp
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UTR
Exon/CDS
Intron
AT5G01430.2

Sequence Viewer

Length: 423 bp
ATGATGTCCTTTGAAATGAATGACCGGAAAAAAATCGGGTTAGGCCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATAGTCTTTGTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCTAACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAACCATCTCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGATGTTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCTACCTTGGCAGTCTTTGCTCAGAAGATACCCGTTCTCGGTTGGATTATTCAGCAACCATATATTAGATCGTTCTTTGACAAGTACCGGGGCAAGCGTGTGCCGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

140

Amino Acids

15.99

Weight (kDa)

10.19

Isoelectric Point (pI)

24.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 16 - 115 8.7e-13 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AccI GTMKAC 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 294, 398
AfiI CCNNNNNNNGG 2 cut(s) 260, 350
AgsI TTSAA 2 cut(s) 14, 163
Alw26I GTCTC 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 3 cut(s) 43, 251, 311
AsuC2I CCSGG 1 cut(s) 401
AvaI CYCGRG 1 cut(s) 136
BccI CCATC 1 cut(s) 218
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 421
Bme1390I CCNGG 1 cut(s) 401
BmeT110I CYCGRG 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 401
BsaHI GRCGYC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 114, 318, 400
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 350
Bse118I RCCGGY 1 cut(s) 415
BseDI CCNNGG 3 cut(s) 114, 318, 400
BseLI CCNNNNNNNGG 2 cut(s) 260, 350
BseMII CTCAG 1 cut(s) 347
BshFI GGCC 3 cut(s) 45, 253, 313
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 3 cut(s) 25, 400, 416
BslI CCNNNNNNNGG 2 cut(s) 260, 350
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 3 cut(s) 45, 253, 313
Bso31I GGTCTC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 136
Bsp143I GATC 1 cut(s) 380
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 3 cut(s) 45, 253, 313
BspCNI CTCAG 1 cut(s) 346
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 3 cut(s) 114, 318, 400
BssMI GATC 1 cut(s) 380
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 2 cut(s) 114, 318
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 114
BstKTI GATC 1 cut(s) 383
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 1 cut(s) 380
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 399
BsuRI GGCC 3 cut(s) 45, 253, 313
BtgI CCRYGG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 407
CciI TCATGA 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 415
CseI GACGC 2 cut(s) 179, 211
Csp6I GTAC 2 cut(s) 293, 397
CviAII CATG 3 cut(s) 115, 172, 184
CviJI RGCY 6 cut(s) 45, 159, 253, 285, 306, 313
CviKI_1 RGCY 6 cut(s) 45, 159, 253, 285, 306, 313
CviQI GTAC 2 cut(s) 293, 397
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 114, 318
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 114, 318
ErhI CCWWGG 2 cut(s) 114, 318
FaeI CATG 3 cut(s) 118, 175, 187
FaiI YATR 7 cut(s) 116, 173, 185, 201, 282, 373, 375
FatI CATG 3 cut(s) 114, 171, 183
FblI GTMKAC 1 cut(s) 167
FspBI CTAG 1 cut(s) 421
HaeIII GGCC 3 cut(s) 45, 253, 313
HapII CCGG 3 cut(s) 25, 400, 416
HgaI GACGC 2 cut(s) 179, 211
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 3 cut(s) 118, 175, 187
HpaII CCGG 3 cut(s) 25, 400, 416
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 333
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 3 cut(s) 118, 175, 187
Kzo9I GATC 1 cut(s) 380
LpnPI CCDG 5 cut(s) 36, 38, 59, 295, 413
MaeI CTAG 1 cut(s) 421
MalI GATC 1 cut(s) 382
MboI GATC 1 cut(s) 380
MboII GAAGA 5 cut(s) 58, 172, 223, 289, 349
MluCI AATT 1 cut(s) 196
MmeI TCCRAC 2 cut(s) 252, 335
MspI CCGG 3 cut(s) 25, 400, 416
MspR9I CCNGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 329
NciI CCSGG 1 cut(s) 401
NcoI CCATGG 1 cut(s) 114
NdeII GATC 1 cut(s) 380
NlaIII CATG 3 cut(s) 118, 175, 187
NlaIV GGNNCC 1 cut(s) 208
PagI TCATGA 1 cut(s) 183
PceI AGGCCT 1 cut(s) 45
PsiI TTATAA 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 208
RsaI GTAC 2 cut(s) 294, 398
RsaNI GTAC 2 cut(s) 293, 397
Sau3AI GATC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 401
SetI ASST 2 cut(s) 281, 320
Sse9I AATT 1 cut(s) 196
SseBI AGGCCT 1 cut(s) 45
SspI AATATT 1 cut(s) 124
SspMI CTAG 1 cut(s) 421
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 2 cut(s) 114, 318
TasI AATT 1 cut(s) 196
TscAI CASTG 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 32, 121, 172, 200
TspRI CASTG 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.