Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004920

Physical Location & Seq

Genomic Coordinates Reverse (-)

29186342 .. 29191115

Gene Structure 4774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGATGGTGGTGGTGGTGGATGAAGATGAAGATTCCTCCCGAGAAATAGTCTTAAGGAATTTGAGGAAACCTGATTATGGGTCTCGTAATTGCGGAAATCGAGTTACGGGTCAAGAAAAGCTCCAAGACGATGGGTTTTGGACTCTAGACGATCTTCAAGGTTGGGTGGCCCTCGCAAGATCCTCATCATCCAATCCACTTTGTGTTCTTCAGATTTCTCTAAGTGAGTCGTCGGCAAAAATGGTTTCCTTCGAGATGAATGATCGGAAAAAGATTGGACTGGGACTGACAGGATTTGGCGTATTTTTCTCATTCCTGGGAATGGTTTTTTTCTTTGACAAGGGATTACTTGCAATGGGAAATATCCTCTTCTTCTCAGGGGTGACTTTAACAATTGGATTTAAGTCCACGCTGCAATTCTTCATGAAACGTCAAAATTTTAAGGTTTTTGATGTTCAACTTTTCACTGGATCTGTGTCCTTGATGGCCAATTGTGGGCATGATTTTGGAGGCATATGGTTTCGTTGTACTCTTCAGTGGCTTCTGGCCAACATTGGCAGTTTTTCTGCAGAAGATTCCAATTCTGGGATGGGTGATCCAACAGCCATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

204

Amino Acids

22.68

Weight (kDa)

5.17

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03180 AT3G03180 AT3G03180 AT3G49420 AT3G49420 AT3G49420 AT5G01430 AT5G01430
fragaria_vesca	FvH4_4g11330
malus_domestica	MD04G1038100.v1.1 MD13G1259200.v1.1
prunus_persica	Prupe.1G188000_v2.0.a1
pyrus_communis	pycom04g03100 pycom13g25970
rosa_chinensis	RchiOBHm_Chr2g0118981 RchiOBHm_Chr4g0396481 RchiOBHm_Chr4g0407571 RchiOBHm_Chr6g0272261
rosa_laevigata	RLG00000008709 RLG00000009598 RLG00000032415
rosa_multiflora	Rmu_sc0004841.1_g000003
rosa_roxburghii	Rroxscaffold_5G00352190
rosa_rugosa	Rorug04G0080400 Rorug04G0080500
rosa_samantha	Rh4AG145200 Rh4BG143100 Rh4CG151900 Rh4DG139200
rosa_wichuraiana	Rw4G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	3 cut(s)	174, 478, 590
AcoI	YGGCCR	2 cut(s)	486, 546
AcsI	RAATTY	2 cut(s)	58, 436
AcuI	CTGAAG	2 cut(s)	194, 518
AdeI	CACNNNGTG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	4 cut(s)	77, 322, 495, 585
AflII	CTTAAG	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	158, 458
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	3 cut(s)	174, 478, 590
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	3 cut(s)	168, 486, 546
ApeKI	GCWGC	1 cut(s)	412
ApoI	RAATTY	2 cut(s)	58, 436
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	394, 605
AvaI	CYCGRG	1 cut(s)	39
BalI	TGGCCA	2 cut(s)	488, 548
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	3 cut(s)	125, 478, 583
BciT130I	CCWGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	567
BfrI	CTTAAG	1 cut(s)	52
BisI	GCNGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	414
Bme1390I	CCNGG	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 322, 495, 585
Bse1I	ACTGG	2 cut(s)	285, 472
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	3 cut(s)	25, 188, 594
BseJI	GATNNNNATC	1 cut(s)	184
BseLI	CCNNNNNNNGG	4 cut(s)	77, 322, 495, 585
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	285, 472
BseXI	GCAGC	1 cut(s)	399
BshFI	GGCC	3 cut(s)	170, 488, 548
BsiHKCI	CYCGRG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	4 cut(s)	77, 322, 495, 585
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	3 cut(s)	170, 488, 548
Bso31I	GGTCTC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	39
Bsp143I	GATC	5 cut(s)	151, 179, 262, 470, 595
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	3 cut(s)	170, 488, 548
BspCNI	CTCAG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	3 cut(s)	174, 478, 590
BspTI	CTTAAG	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	285, 472
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	5 cut(s)	151, 179, 262, 470, 595
Bst2UI	CCWGG	1 cut(s)	317
Bst6I	CTCTTC	2 cut(s)	374, 537
BstAFI	CTTAAG	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	221, 376
BstF5I	GGATG	3 cut(s)	25, 188, 594
BstKTI	GATC	5 cut(s)	154, 182, 265, 473, 598
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	5 cut(s)	151, 179, 262, 470, 595
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	179, 470
BstXI	CCANNNNNNTGG	1 cut(s)	131
BstYI	RGATCY	2 cut(s)	179, 470
BsuRI	GGCC	3 cut(s)	170, 488, 548
BtsCI	GGATG	3 cut(s)	25, 188, 594
BtsIMutI	CAGTG	2 cut(s)	465, 542
CciI	TCATGA	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	2 cut(s)	424, 500
CviJI	RGCY	6 cut(s)	121, 170, 488, 541, 548, 605
CviKI_1	RGCY	6 cut(s)	121, 170, 488, 541, 548, 605
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	2 cut(s)	221, 376
DpnI	GATC	5 cut(s)	153, 181, 264, 472, 597
DpnII	GATC	5 cut(s)	151, 179, 262, 470, 595
DraIII	CACNNNGTG	1 cut(s)	203
EaeI	YGGCCR	2 cut(s)	486, 546
Eam1104I	CTCTTC	2 cut(s)	374, 537
EarI	CTCTTC	2 cut(s)	374, 537
Eco31I	GGTCTC	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	194, 518
Eco88I	CYCGRG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	427, 503
FaiI	YATR	7 cut(s)	78, 425, 501, 515, 517, 608, 610
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	423, 499
FauNDI	CATATG	1 cut(s)	515
Fnu4HI	GCNGC	1 cut(s)	413
FokI	GGATG	3 cut(s)	32, 175, 601
Fsp4HI	GCNGC	1 cut(s)	413
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	1 cut(s)	413
HaeIII	GGCC	3 cut(s)	170, 488, 548
Hin1II	CATG	2 cut(s)	427, 503
HinfI	GANTC	4 cut(s)	32, 142, 227, 575
HphI	GGTGA	2 cut(s)	394, 605
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	2 cut(s)	213, 267
Hpy188III	TCNNGA	5 cut(s)	39, 113, 146, 253, 424
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	3 cut(s)	353, 415, 569
HpyF3I	CTNAG	2 cut(s)	221, 376
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	2 cut(s)	427, 503
Kzo9I	GATC	5 cut(s)	151, 179, 262, 470, 595
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	9 cut(s)	84, 266, 276, 302, 329, 363, 453, 530, 570
Lsp1109I	GCAGC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	2 cut(s)	103, 382
MalI	GATC	5 cut(s)	153, 181, 264, 472, 597
MboI	GATC	5 cut(s)	151, 179, 262, 470, 595
MboII	GAAGA	9 cut(s)	35, 41, 146, 200, 361, 364, 412, 524, 584
MfeI	CAATTG	2 cut(s)	393, 490
MflI	RGATCY	2 cut(s)	179, 470
MlsI	TGGCCA	2 cut(s)	488, 548
MluCI	AATT	7 cut(s)	58, 88, 393, 416, 436, 490, 580
MluNI	TGGCCA	2 cut(s)	488, 548
MlyI	GAGTC	2 cut(s)	136, 236
MnlI	CCTC	6 cut(s)	46, 57, 182, 193, 377, 503
Mox20I	TGGCCA	2 cut(s)	488, 548
MscI	TGGCCA	2 cut(s)	488, 548
MseI	TTAA	4 cut(s)	53, 389, 402, 441
Msp20I	TGGCCA	2 cut(s)	488, 548
MspCI	CTTAAG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	2 cut(s)	393, 490
MvaI	CCWGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	515
NdeII	GATC	5 cut(s)	151, 179, 262, 470, 595
NlaIII	CATG	2 cut(s)	427, 503
NmuCI	GTSAC	1 cut(s)	382
PagI	TCATGA	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	32, 575
PkrI	GCNGC	1 cut(s)	414
PleI	GAGTC	2 cut(s)	136, 235
PpsI	GAGTC	2 cut(s)	136, 235
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	2 cut(s)	179, 470
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	53, 389, 402, 441
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	5 cut(s)	151, 179, 262, 470, 595
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	2 cut(s)	136, 236
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	5 cut(s)	73, 123, 163, 433, 447
SfcI	CTRYAG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	7 cut(s)	58, 88, 393, 416, 436, 490, 580
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	315
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	100, 252
TasI	AATT	7 cut(s)	58, 88, 393, 416, 436, 490, 580
TatI	WGTACW	1 cut(s)	527
TfiI	GAWTC	2 cut(s)	32, 575
Tru1I	TTAA	4 cut(s)	53, 389, 402, 441
Tru9I	TTAA	4 cut(s)	53, 389, 402, 441
TscAI	CASTG	2 cut(s)	472, 542
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	5 cut(s)	36, 42, 272, 412, 440
TspRI	CASTG	2 cut(s)	472, 542
Vha464I	CTTAAG	1 cut(s)	52
XapI	RAATTY	2 cut(s)	58, 436
XbaI	TCTAGA	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.