MD04G1038100.v1.1

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0004920
Physical Location & Seq
Forward (+)
4233856 .. 4237251
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1038100.v1.1.491

Sequence Viewer

Length: 408 bp
ATGAATGATAGAAAAAAGATTGGACTAGGATTGACTGGATTCGGTATATTTTTCACGTGCCTGGGAATGGCTTTCTTCTTTGACAAGGGATTGCTTGCAATGGGAAATATCCTCTTCTTGTCAGGGGTGACTTTAACCATTGGATTTAAGCCCACGATGCAATTCTTCATGAAACGTCAAAATTATAAGGGAACAATTTCTTTTGGTGTTGGCTTCTTCTTTGTGATCATAGGGTGGCCTATTATTGGCATGATTTTGGAGGCATATGGGTTCATCGTACTCTTCAGCGGCTTCTGGCCAACACTGGCAGTTTTTATTCAGAAGATTCCAGTTCTTGGCTGGCTGTTTCAACAGCCATATGTTAGATCGGTCTTTGACCGATATCGTGGCCGACGGGTGCCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

136

Amino Acids

15.39

Weight (kDa)

10.4

Isoelectric Point (pI)

26.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 11 - 110 1.1e-12 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 335
AciI CCGC 1 cut(s) 288
AcoI YGGCCR 2 cut(s) 296, 388
AcuI CTGAAG 1 cut(s) 268
AcvI CACGTG 1 cut(s) 57
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 67, 245, 335
AgsI TTSAA 1 cut(s) 350
AjnI CCWGG 1 cut(s) 60
AoxI GGCC 3 cut(s) 236, 296, 388
Asp700I GAANNNNTTC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 139
BalI TGGCCA 1 cut(s) 298
BanI GGYRCC 1 cut(s) 397
BbrPI CACGTG 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 62
BclI TGATCA 1 cut(s) 225
BfaI CTAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 62
BmsI GCATC 1 cut(s) 147
BsaAI YACGTR 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 245, 335
Bse1I ACTGG 3 cut(s) 40, 309, 329
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 61
BseLI CCNNNNNNNGG 3 cut(s) 67, 245, 335
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 3 cut(s) 40, 309, 329
BshFI GGCC 3 cut(s) 238, 298, 390
BshNI GGYRCC 1 cut(s) 397
BslI CCNNNNNNNGG 3 cut(s) 67, 245, 335
BsnI GGCC 3 cut(s) 238, 298, 390
Bsp143I GATC 2 cut(s) 225, 365
BspACI CCGC 1 cut(s) 288
BspANI GGCC 3 cut(s) 238, 298, 390
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 3 cut(s) 40, 309, 329
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 2 cut(s) 225, 365
Bst2UI CCWGG 1 cut(s) 62
Bst6I CTCTTC 2 cut(s) 119, 287
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 96, 341
BstKTI GATC 2 cut(s) 228, 368
BstMBI GATC 2 cut(s) 225, 365
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BsuRI GGCC 3 cut(s) 238, 298, 390
BtsIMutI CAGTG 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 96, 341
CciI TCATGA 1 cut(s) 168
Csp6I GTAC 1 cut(s) 278
CviAII CATG 2 cut(s) 169, 250
CviQI GTAC 1 cut(s) 278
DpnI GATC 2 cut(s) 227, 367
DpnII GATC 2 cut(s) 225, 365
EaeI YGGCCR 2 cut(s) 296, 388
Eam1104I CTCTTC 2 cut(s) 119, 287
EarI CTCTTC 2 cut(s) 119, 287
Eco32I GATATC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 268
Eco72I CACGTG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 60
EcoRV GATATC 1 cut(s) 383
FaeI CATG 2 cut(s) 172, 253
FaiI YATR 9 cut(s) 47, 170, 186, 230, 251, 265, 267, 358, 360
FatI CATG 2 cut(s) 168, 249
FauNDI CATATG 2 cut(s) 265, 358
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 289
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 289
HaeIII GGCC 3 cut(s) 238, 298, 390
Hin1II CATG 2 cut(s) 172, 253
HinfI GANTC 2 cut(s) 39, 325
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 396
HpyCH4IV ACGT 2 cut(s) 56, 175
HpyCH4V TGCA 2 cut(s) 98, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpySE526I ACGT 2 cut(s) 56, 175
Hsp92II CATG 2 cut(s) 172, 253
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 2 cut(s) 225, 365
LpnPI CCDG 8 cut(s) 21, 47, 74, 108, 280, 290, 325, 342
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 26
MaeII ACGT 2 cut(s) 56, 175
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 227, 367
MboI GATC 2 cut(s) 225, 365
MboII GAAGA 6 cut(s) 67, 106, 157, 208, 274, 334
MlsI TGGCCA 1 cut(s) 298
MluCI AATT 3 cut(s) 161, 181, 195
MluNI TGGCCA 1 cut(s) 298
MnlI CCTC 2 cut(s) 122, 253
Mox20I TGGCCA 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 196
MscI TGGCCA 1 cut(s) 298
MseI TTAA 2 cut(s) 134, 147
Msp20I TGGCCA 1 cut(s) 298
MspA1I CMGCKG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeI CATATG 2 cut(s) 265, 358
NdeII GATC 2 cut(s) 225, 365
NlaIII CATG 2 cut(s) 172, 253
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 127
PagI TCATGA 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 39, 325
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 1 cut(s) 290
PmaCI CACGTG 1 cut(s) 57
PmlI CACGTG 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 57
PsiI TTATAA 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 60
PspCI CACGTG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 399
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 134, 147
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 2 cut(s) 225, 365
ScrFI CCNGG 1 cut(s) 62
SetI ASST 2 cut(s) 59, 178
SfaNI GCATC 1 cut(s) 147
Sse9I AATT 3 cut(s) 161, 181, 195
SsiI CCGC 1 cut(s) 288
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 60
TaiI ACGT 2 cut(s) 59, 178
TaqII GACCGA 2 cut(s) 358, 393
TasI AATT 3 cut(s) 161, 181, 195
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 2 cut(s) 39, 325
Tru1I TTAA 2 cut(s) 134, 147
Tru9I TTAA 2 cut(s) 134, 147
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 4 cut(s) 17, 157, 185, 262
TspRI CASTG 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 336
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.