Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004841.1

Orthogroup ID

OG0004920

Physical Location & Seq

Genomic Coordinates Forward (+)

5071 .. 9516

Gene Structure 4446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004841.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggtctttaaagctctgcctctatggccaaactttgatcacgagatctgcaccagagtccgattctttgagaagcccaacaatgtcggtgaattggaggcccaggaactccggccagcgagtggtgtagaggtggcgcacttgctcgggaatgagagcccaaacatgaggcaaagactggtctgcttcgctcgctctctcaggtcctcgcaagatcctcatcatccaatcgagttttgtgttcttcagatttctctaagtgagtcgtcggcaacaatggtttccttcgagatgaatgatcggaaaaagatcggactgggattgacaggatttggcgtatttttctcattcctgggaatggtttttttctttgacaagggattacttgcaatgggaaatatcctcttcttctcaggggtgactttaacaattggatttaagtccacgctgcaattcttcatgaaacgtcaaaattttaaggggtcaatttcttttggtgttgggttcttctttgtgctcataggatggccaattgtgggcatgattttggaggcatatggtttcgttgtactcttcagtggcttctggccaacattggcagtttttctgcagaagattccaattctgggatgggtggtccaacagccatatattagatcgttctttgatcgataccgtggtcgacgggtgcctgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

232

Amino Acids

26.44

Weight (kDa)

9.62

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03180 AT3G03180 AT3G03180 AT3G49420 AT3G49420 AT3G49420 AT5G01430 AT5G01430
fragaria_vesca	FvH4_4g11330
malus_domestica	MD04G1038100.v1.1 MD13G1259200.v1.1
prunus_persica	Prupe.1G188000_v2.0.a1
pyrus_communis	pycom04g03100 pycom13g25970
rosa_chinensis	RchiOBHm_Chr2g0118981 RchiOBHm_Chr4g0396481 RchiOBHm_Chr4g0407571 RchiOBHm_Chr6g0272261
rosa_laevigata	RLG00000008709 RLG00000009598 RLG00000032415
rosa_multiflora	Rmu_sc0004841.1_g000003
rosa_roxburghii	Rroxscaffold_5G00352190
rosa_rugosa	Rorug04G0080400 Rorug04G0080500
rosa_samantha	Rh4AG145200 Rh4BG143100 Rh4CG151900 Rh4DG139200
rosa_wichuraiana	Rw4G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	688
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	682
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	4 cut(s)	26, 113, 527, 587
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	2 cut(s)	230, 559
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	4 cut(s)	122, 358, 536, 626
AjnI	CCWGG	2 cut(s)	102, 351
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	5 cut(s)	26, 99, 113, 527, 587
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	1 cut(s)	472
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	3 cut(s)	100, 204, 637
AsuHPI	GGTGA	2 cut(s)	101, 430
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	204, 637
BaeI	ACNNNNGTAYC	2 cut(s)	664, 697
BalI	TGGCCA	3 cut(s)	28, 529, 589
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	2 cut(s)	519, 624
BciT130I	CCWGG	2 cut(s)	104, 353
BclI	TGATCA	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	608
BglI	GCCNNNNNGGC	1 cut(s)	25
BglII	AGATCT	1 cut(s)	45
BisI	GCNGC	1 cut(s)	449
BlsI	GCNGC	1 cut(s)	450
Bme1390I	CCNGG	2 cut(s)	104, 353
Bme18I	GGWCC	2 cut(s)	204, 637
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	3 cut(s)	100, 204, 637
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	2 cut(s)	104, 353
BmrI	ACTGGG	1 cut(s)	326
BmuI	ACTGGG	1 cut(s)	326
Bsa29I	ATCGAT	1 cut(s)	670
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	102, 352, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 358, 536, 626
Bse1I	ACTGG	2 cut(s)	183, 321
Bse3DI	GCAATG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	104, 353
BseCI	ATCGAT	1 cut(s)	670
BseDI	CCNNGG	3 cut(s)	102, 352, 676
BseGI	GGATG	3 cut(s)	223, 530, 635
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	4 cut(s)	122, 358, 536, 626
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	214, 426
BseNI	ACTGG	2 cut(s)	183, 321
BseXI	GCAGC	1 cut(s)	435
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	5 cut(s)	28, 101, 115, 529, 589
BshNI	GGYRCC	1 cut(s)	688
BshVI	ATCGAT	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	112
BslI	CCNNNNNNNGG	4 cut(s)	122, 358, 536, 626
BsnI	GGCC	5 cut(s)	28, 101, 115, 529, 589
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	161, 519
Bsp143I	GATC	7 cut(s)	37, 45, 214, 298, 309, 656, 667
BspANI	GGCC	5 cut(s)	28, 101, 115, 529, 589
BspCNI	CTCAG	2 cut(s)	213, 425
BspDI	ATCGAT	1 cut(s)	670
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	690
BspMAI	CTGCAG	1 cut(s)	612
BspPI	GGATC	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	183, 321
BssECI	CCNNGG	3 cut(s)	102, 352, 676
BssMI	GATC	7 cut(s)	37, 45, 214, 298, 309, 656, 667
BssSI	CACGAG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	2 cut(s)	104, 353
Bst4CI	ACNGT	1 cut(s)	677
Bst6I	CTCTTC	2 cut(s)	410, 578
BstC8I	GCNNGC	2 cut(s)	117, 193
BstDEI	CTNAG	3 cut(s)	200, 257, 412
BstDSI	CCRYGG	1 cut(s)	676
BstF5I	GGATG	3 cut(s)	223, 530, 635
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	7 cut(s)	40, 48, 217, 301, 312, 659, 670
BstMBI	GATC	7 cut(s)	37, 45, 214, 298, 309, 656, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 192
BstNI	CCWGG	2 cut(s)	104, 353
BstSCI	CCNGG	2 cut(s)	102, 351
BstSFI	CTRYAG	1 cut(s)	608
BstV1I	GCAGC	1 cut(s)	435
BstX2I	RGATCY	2 cut(s)	45, 214
BstYI	RGATCY	2 cut(s)	45, 214
Bsu15I	ATCGAT	1 cut(s)	670
BsuRI	GGCC	5 cut(s)	28, 101, 115, 529, 589
BsuTUI	ATCGAT	1 cut(s)	670
BtgI	CCRYGG	1 cut(s)	676
BtsCI	GGATG	3 cut(s)	223, 530, 635
BtsIMutI	CAGTG	1 cut(s)	583
Cac8I	GCNNGC	2 cut(s)	117, 193
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	3 cut(s)	100, 204, 637
ClaI	ATCGAT	1 cut(s)	670
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	3 cut(s)	166, 460, 541
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	3 cut(s)	200, 257, 412
DpnI	GATC	7 cut(s)	39, 47, 216, 300, 311, 658, 669
DpnII	GATC	7 cut(s)	37, 45, 214, 298, 309, 656, 667
DraI	TTTAAA	1 cut(s)	10
EaeI	YGGCCR	4 cut(s)	26, 113, 527, 587
Eam1104I	CTCTTC	2 cut(s)	410, 578
EarI	CTCTTC	2 cut(s)	410, 578
Eco24I	GRGCYC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	204, 637
Eco57I	CTGAAG	2 cut(s)	230, 559
Eco88I	CYCGRG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	102, 351
EcoT38I	GRGCYC	1 cut(s)	161
FaeI	CATG	3 cut(s)	169, 463, 544
FaiI	YATR	9 cut(s)	25, 167, 461, 521, 542, 556, 558, 649, 651
FatI	CATG	3 cut(s)	165, 459, 540
FauNDI	CATATG	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	682
Fnu4HI	GCNGC	1 cut(s)	449
FokI	GGATG	3 cut(s)	210, 537, 642
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	449
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	449
HaeIII	GGCC	5 cut(s)	28, 101, 115, 529, 589
HapII	CCGG	1 cut(s)	112
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	3 cut(s)	169, 463, 544
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	683
HindII	GTYRAC	1 cut(s)	683
HinfI	GANTC	4 cut(s)	57, 63, 263, 616
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	101, 430
Hpy166II	GTNNAC	2 cut(s)	444, 683
Hpy188I	TCNGA	4 cut(s)	62, 249, 303, 314
Hpy188III	TCNNGA	4 cut(s)	41, 148, 289, 460
Hpy8I	GTNNAC	2 cut(s)	444, 683
Hpy99I	CGWCG	2 cut(s)	271, 687
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	4 cut(s)	51, 389, 451, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 192
HpyF3I	CTNAG	3 cut(s)	200, 257, 412
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	3 cut(s)	169, 463, 544
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	7 cut(s)	37, 45, 214, 298, 309, 656, 667
Lsp1109I	GCAGC	1 cut(s)	435
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	7 cut(s)	39, 47, 216, 300, 311, 658, 669
MboI	GATC	7 cut(s)	37, 45, 214, 298, 309, 656, 667
MboII	GAAGA	7 cut(s)	236, 397, 400, 448, 499, 565, 625
MfeI	CAATTG	2 cut(s)	429, 531
MflI	RGATCY	2 cut(s)	45, 214
MhlI	GDGCHC	2 cut(s)	161, 519
MlsI	TGGCCA	3 cut(s)	28, 529, 589
MluCI	AATT	7 cut(s)	92, 429, 452, 472, 486, 531, 621
MluNI	TGGCCA	3 cut(s)	28, 529, 589
MlyI	GAGTC	2 cut(s)	66, 272
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	8 cut(s)	30, 91, 124, 162, 217, 228, 413, 544
Mox20I	TGGCCA	3 cut(s)	28, 529, 589
MscI	TGGCCA	3 cut(s)	28, 529, 589
MseI	TTAA	4 cut(s)	9, 425, 438, 477
Msp20I	TGGCCA	3 cut(s)	28, 529, 589
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	104, 353
MunI	CAATTG	2 cut(s)	429, 531
MvaI	CCWGG	2 cut(s)	104, 353
MwoI	GCNNNNNNNGC	2 cut(s)	25, 192
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	7 cut(s)	37, 45, 214, 298, 309, 656, 667
NlaIII	CATG	3 cut(s)	169, 463, 544
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	1 cut(s)	418
PagI	TCATGA	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	63, 616
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	450
PleI	GAGTC	2 cut(s)	65, 271
PpsI	GAGTC	2 cut(s)	65, 271
PpuMI	RGGWCCY	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	102, 351
PspGI	CCWGG	2 cut(s)	102, 351
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	3 cut(s)	100, 204, 637
PspPPI	RGGWCCY	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	612
PsuI	RGATCY	2 cut(s)	45, 214
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SalI	GTCGAC	1 cut(s)	681
SaqAI	TTAA	4 cut(s)	9, 425, 438, 477
SatI	GCNGC	1 cut(s)	449
Sau3AI	GATC	7 cut(s)	37, 45, 214, 298, 309, 656, 667
Sau96I	GGNCC	3 cut(s)	100, 204, 637
SchI	GAGTC	2 cut(s)	66, 272
ScrFI	CCNGG	2 cut(s)	104, 353
SduI	GDGCHC	2 cut(s)	161, 519
SetI	ASST	4 cut(s)	16, 135, 206, 469
SfcI	CTRYAG	1 cut(s)	608
SinI	GGWCC	2 cut(s)	204, 637
Sse9I	AATT	7 cut(s)	92, 429, 452, 472, 486, 531, 621
StyD4I	CCNGG	2 cut(s)	102, 351
TaaI	ACNGT	1 cut(s)	677
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	4 cut(s)	231, 288, 670, 682
TasI	AATT	7 cut(s)	92, 429, 452, 472, 486, 531, 621
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	2 cut(s)	63, 616
Tru1I	TTAA	4 cut(s)	9, 425, 438, 477
Tru9I	TTAA	4 cut(s)	9, 425, 438, 477
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	308, 448, 476
TspRI	CASTG	1 cut(s)	583
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	204, 637
XapI	RAATTY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627
XmiI	GTMKAC	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.