Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004920

Physical Location & Seq

Genomic Coordinates Forward (+)

14893285 .. 14895541

Gene Structure 2257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032415

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGTGAAGCAGTCAAGATAGTGGTTTCGGAGTCTGTTCTAAAGAAGAGGAAGAGAGAGGAGGAATGGGCCTTGGCAAAGAAGCAGGGGCTTGAAGCTGCCAAGAAGAAGAATGCTAAGAGTAGAAAGCTTATTTACAACAAATTCAAACAGTACACGAAGGAGTATGCAGAGAAGATCCTCTTCTTCTCAGGGGTGACTTTAACAATTGGATTTAAGTCCACGCTGCAATTCTTCATAAAACGTCAAAATTTTAAGGGGTCAATTTCTTTTGGTGTTGGGTTCTTCTTTGTGCTCATAGGGTGGCCAATTGTGGGCATGATTTTGGAGGCATATAGTTTCATTGTACTCTTCAGTGGCTTCTGGCCAACATTGGCAGTTTTCCTGCAGAAGATTCCAATTCTGGGATGGGTGCTCCAACAGCCATATATTAGATCGGTGTTCAAAGACAGGAATCTGGTTACACAGCTTGTCAGAAGGGCTGAGAGGGCTAGTTACAAGGCAATAGTCCTCACTGCTGACACTCCAATGGTTCTCACAGCCATGTTTATTGGATCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

188

Amino Acids

21.42

Weight (kDa)

10.22

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	9 - 59	3.5e-09	Ribosomal L30 N-terminal domain
Got1	PF04178	59 - 133	1.8e-08	Got1/Sft2-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03180 AT3G03180 AT3G03180 AT3G49420 AT3G49420 AT3G49420 AT5G01430 AT5G01430
fragaria_vesca	FvH4_4g11330
malus_domestica	MD04G1038100.v1.1 MD13G1259200.v1.1
prunus_persica	Prupe.1G188000_v2.0.a1
pyrus_communis	pycom04g03100 pycom13g25970
rosa_chinensis	RchiOBHm_Chr2g0118981 RchiOBHm_Chr4g0396481 RchiOBHm_Chr4g0407571 RchiOBHm_Chr6g0272261
rosa_laevigata	RLG00000008709 RLG00000009598 RLG00000032415
rosa_multiflora	Rmu_sc0004841.1_g000003
rosa_roxburghii	Rroxscaffold_5G00352190
rosa_rugosa	Rorug04G0080400 Rorug04G0080500
rosa_samantha	Rh4AG145200 Rh4BG143100 Rh4CG151900 Rh4DG139200
rosa_wichuraiana	Rw4G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	172, 562
AcoI	YGGCCR	2 cut(s)	305, 365
AcsI	RAATTY	2 cut(s)	143, 250
AcuI	CTGAAG	1 cut(s)	337
AfaI	GTAC	2 cut(s)	155, 348
AfiI	CCNNNNNNNGG	2 cut(s)	314, 404
AgsI	TTSAA	3 cut(s)	95, 148, 445
AluBI	AGCT	3 cut(s)	98, 130, 469
AluI	AGCT	3 cut(s)	98, 130, 469
Alw21I	GWGCWC	2 cut(s)	297, 417
AlwI	GGATC	2 cut(s)	172, 562
AoxI	GGCC	3 cut(s)	69, 305, 365
ApeKI	GCWGC	2 cut(s)	98, 226
ApoI	RAATTY	2 cut(s)	143, 250
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	17, 208
BalI	TGGCCA	2 cut(s)	307, 367
Bbv12I	GWGCWC	2 cut(s)	297, 417
BbvI	GCAGC	2 cut(s)	85, 213
BccI	CCATC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	386
BisI	GCNGC	2 cut(s)	99, 227
BlsI	GCNGC	2 cut(s)	100, 228
BmgT120I	GGNCC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 404
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	314, 404
BseMII	CTCAG	2 cut(s)	204, 474
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	85, 213
BshFI	GGCC	3 cut(s)	71, 307, 367
BsiHKAI	GWGCWC	2 cut(s)	297, 417
BslI	CCNNNNNNNGG	2 cut(s)	314, 404
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	71, 307, 367
Bsp1286I	GDGCHC	2 cut(s)	297, 417
Bsp143I	GATC	3 cut(s)	177, 434, 554
BspANI	GGCC	3 cut(s)	71, 307, 367
BspCNI	CTCAG	2 cut(s)	203, 475
BspMAI	CTGCAG	1 cut(s)	390
BspPI	GGATC	2 cut(s)	172, 562
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	177, 434, 554
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	4 cut(s)	41, 47, 188, 356
BstDEI	CTNAG	3 cut(s)	117, 190, 483
BstF5I	GGATG	1 cut(s)	413
BstKTI	GATC	3 cut(s)	180, 437, 557
BstMBI	GATC	3 cut(s)	177, 434, 554
BstMWI	GCNNNNNNNGC	2 cut(s)	421, 488
BstSFI	CTRYAG	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	85, 213
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	71, 307, 367
BtsCI	GGATG	1 cut(s)	413
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	361, 513
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	154, 347
CviAII	CATG	2 cut(s)	319, 544
CviQI	GTAC	2 cut(s)	154, 347
DdeI	CTNAG	3 cut(s)	117, 190, 483
DpnI	GATC	3 cut(s)	179, 436, 556
DpnII	GATC	3 cut(s)	177, 434, 554
EaeI	YGGCCR	2 cut(s)	305, 365
Eam1104I	CTCTTC	4 cut(s)	41, 47, 188, 356
EarI	CTCTTC	4 cut(s)	41, 47, 188, 356
Eco130I	CCWWGG	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	322, 547
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	2 cut(s)	318, 543
Fnu4HI	GCNGC	2 cut(s)	99, 227
FokI	GGATG	1 cut(s)	420
Fsp4HI	GCNGC	2 cut(s)	99, 227
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	2 cut(s)	99, 227
HaeIII	GGCC	3 cut(s)	71, 307, 367
Hin1II	CATG	2 cut(s)	322, 547
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	3 cut(s)	32, 394, 454
HphI	GGTGA	2 cut(s)	17, 208
Hpy166II	GTNNAC	2 cut(s)	156, 222
Hpy188I	TCNGA	2 cut(s)	31, 476
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	2 cut(s)	156, 222
HpyAV	CCTTC	2 cut(s)	154, 471
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	170, 229, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	421, 488
HpyF3I	CTNAG	3 cut(s)	117, 190, 483
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	322, 547
Kzo9I	GATC	3 cut(s)	177, 434, 554
LmnI	GCTCC	1 cut(s)	420
LpnPI	CCDG	7 cut(s)	71, 177, 349, 389, 398, 436, 443
Lsp1109I	GCAGC	2 cut(s)	85, 213
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	3 cut(s)	196, 460, 494
MalI	GATC	3 cut(s)	179, 436, 556
MboI	GATC	3 cut(s)	177, 434, 554
MfeI	CAATTG	2 cut(s)	207, 309
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	2 cut(s)	297, 417
MlsI	TGGCCA	2 cut(s)	307, 367
MluCI	AATT	7 cut(s)	143, 207, 230, 250, 264, 309, 399
MluNI	TGGCCA	2 cut(s)	307, 367
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	7 cut(s)	42, 52, 55, 191, 322, 480, 521
Mox20I	TGGCCA	2 cut(s)	307, 367
MscI	TGGCCA	2 cut(s)	307, 367
MseI	TTAA	3 cut(s)	203, 216, 255
MslI	CAYNNNNRTG	2 cut(s)	527, 542
Msp20I	TGGCCA	2 cut(s)	307, 367
MunI	CAATTG	2 cut(s)	207, 309
Mva1269I	GAATGC	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	421, 488
NdeII	GATC	3 cut(s)	177, 434, 554
NlaIII	CATG	2 cut(s)	322, 547
NmuCI	GTSAC	1 cut(s)	196
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	394, 454
PkrI	GCNGC	2 cut(s)	100, 228
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	69
PstI	CTGCAG	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	2 cut(s)	155, 348
RsaNI	GTAC	2 cut(s)	154, 347
RseI	CAYNNNNRTG	2 cut(s)	527, 542
SaqAI	TTAA	3 cut(s)	203, 216, 255
SatI	GCNGC	2 cut(s)	99, 227
Sau3AI	GATC	3 cut(s)	177, 434, 554
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	2 cut(s)	297, 417
SetI	ASST	4 cut(s)	100, 132, 247, 471
SfcI	CTRYAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	2 cut(s)	527, 542
Sse9I	AATT	7 cut(s)	143, 207, 230, 250, 264, 309, 399
SspMI	CTAG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	247
TasI	AATT	7 cut(s)	143, 207, 230, 250, 264, 309, 399
TatI	WGTACW	2 cut(s)	153, 346
TfiI	GAWTC	2 cut(s)	394, 454
Tru1I	TTAA	3 cut(s)	203, 216, 255
Tru9I	TTAA	3 cut(s)	203, 216, 255
TscAI	CASTG	2 cut(s)	361, 520
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	98, 226
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	226, 331
TspRI	CASTG	2 cut(s)	361, 520
XapI	RAATTY	2 cut(s)	143, 250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	405
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.