RLG00000008709

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004920
Physical Location & Seq
Forward (+)
35500304 .. 35504854
4551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008709

Sequence Viewer

Length: 759 bp
ATGATCGTTGAAGCTCTGCCTCTGTGGCCAAACTCTGATCACGAGATCTGCACCAGAGTCCGATTCTTTGAGAAGCCCAACAGTGTCGGTGAATCGGCGGTCGAGGAACTCCGGCCAGCGAGTGATTTGAGGTTGGATTTGATGAGAGGAAGAAGAAGAGCTAGGATGATGAGGCTGGCGTTTGGGAGGTTGGATTTGATGAGAGGATGTAGAAGAGCTAGGATGATGAGGCCCGTGTTTGGTCTGCTTCGCTCGCACTCACAGGTCCTCGCAAGATCCTCATCATCTAATCCAGTTTGTGTTCTTCAGATTTCTCTAAGTGAGTCGTCGGCAAAAATGGTTTCCTTCGAGATGAATGATCGGAAAAAGATCGGACTGGGACTGACAGGATTTGGCGTATTTTTCTCATTCCTGGGAATGGTTTTTTTCTTTGATAAGGGATTACTTGCAATGGGAAATATCCTCTTCTTCTCAGGGGTGACTTTAACAATTGGATTTAAGTCCACGCTGCAATTCTTCATGAAACGTCAAAATTTTAAGGGGTCAATTTCTTTTGGTGTTGGGTTCTTCTTTGTGCTCATAGGGTGGCCAATTGTGGGCATGATCTTGGAGGCATATGGTTTCGTTGTACTCTTCAGTGGCTTCTGGCCAACATTGGCAGTTTTTCTGCAGAAGATTCCAATTCTGGGATGGGTGGTCCAACAGCCATATATTAGATCGTTCTTTGACCGATACCGTGGTCGACGGGTGCCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

253

Amino Acids

28.77

Weight (kDa)

11.11

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 128 - 227 5.5e-13 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 748
AccI GTMKAC 1 cut(s) 742
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 4 cut(s) 26, 113, 587, 647
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 2 cut(s) 290, 619
AfaI GTAC 1 cut(s) 630
AfiI CCNNNNNNNGG 4 cut(s) 239, 418, 596, 686
AgsI TTSAA 1 cut(s) 11
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 3 cut(s) 14, 161, 218
AluI AGCT 3 cut(s) 14, 161, 218
Alw21I GWGCWC 1 cut(s) 579
AlwI GGATC 1 cut(s) 270
AoxI GGCC 5 cut(s) 26, 113, 230, 587, 647
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 1 cut(s) 532
AspS9I GGNCC 3 cut(s) 231, 265, 697
AsuHPI GGTGA 2 cut(s) 101, 490
AvaII GGWCC 2 cut(s) 265, 697
BaeI ACNNNNGTAYC 2 cut(s) 724, 757
BalI TGGCCA 3 cut(s) 28, 589, 649
BanI GGYRCC 1 cut(s) 748
BauI CACGAG 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 495
BccI CCATC 1 cut(s) 684
BciT130I CCWGG 1 cut(s) 413
BclI TGATCA 1 cut(s) 37
BfaI CTAG 2 cut(s) 162, 219
BfmI CTRYAG 1 cut(s) 668
BglI GCCNNNNNGGC 1 cut(s) 25
BglII AGATCT 1 cut(s) 45
BisI GCNGC 1 cut(s) 509
BlsI GCNGC 1 cut(s) 510
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 2 cut(s) 265, 697
BmgT120I GGNCC 3 cut(s) 231, 265, 697
BmiI GGNNCC 1 cut(s) 750
BmrFI CCNGG 1 cut(s) 413
BmrI ACTGGG 1 cut(s) 386
BmuI ACTGGG 1 cut(s) 386
BsaBI GATNNNNATC 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 412, 736
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 418, 596, 686
Bse1I ACTGG 2 cut(s) 293, 381
Bse3DI GCAATG 1 cut(s) 456
Bse8I GATNNNNATC 1 cut(s) 280
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 412, 736
BseGI GGATG 4 cut(s) 171, 212, 228, 695
BseJI GATNNNNATC 1 cut(s) 280
BseLI CCNNNNNNNGG 4 cut(s) 239, 418, 596, 686
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 293, 381
BseXI GCAGC 1 cut(s) 495
BsgI GTGCAG 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 5 cut(s) 28, 115, 232, 589, 649
BshNI GGYRCC 1 cut(s) 748
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 579
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 4 cut(s) 239, 418, 596, 686
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 5 cut(s) 28, 115, 232, 589, 649
Bsp1286I GDGCHC 1 cut(s) 579
Bsp143I GATC 8 cut(s) 3, 37, 45, 275, 358, 369, 603, 716
BspACI CCGC 1 cut(s) 98
BspANI GGCC 5 cut(s) 28, 115, 232, 589, 649
BspCNI CTCAG 1 cut(s) 485
BspHI TCATGA 1 cut(s) 519
BspLI GGNNCC 1 cut(s) 750
BspMAI CTGCAG 1 cut(s) 672
BspPI GGATC 1 cut(s) 270
BspQI GCTCTTC 2 cut(s) 151, 208
BspT107I GGYRCC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 2 cut(s) 293, 381
BssECI CCNNGG 2 cut(s) 412, 736
BssMI GATC 8 cut(s) 3, 37, 45, 275, 358, 369, 603, 716
BssSI CACGAG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 2 cut(s) 83, 737
Bst6I CTCTTC 4 cut(s) 151, 208, 470, 638
BstC8I GCNNGC 3 cut(s) 117, 177, 254
BstDEI CTNAG 2 cut(s) 317, 472
BstDSI CCRYGG 1 cut(s) 736
BstF5I GGATG 4 cut(s) 171, 212, 228, 695
BstKTI GATC 8 cut(s) 6, 40, 48, 278, 361, 372, 606, 719
BstMBI GATC 8 cut(s) 3, 37, 45, 275, 358, 369, 603, 716
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 25, 253
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 668
BstV1I GCAGC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 45, 275
BstYI RGATCY 2 cut(s) 45, 275
BsuRI GGCC 5 cut(s) 28, 115, 232, 589, 649
BtgI CCRYGG 1 cut(s) 736
BtsCI GGATG 4 cut(s) 171, 212, 228, 695
BtsIMutI CAGTG 2 cut(s) 88, 643
Cac8I GCNNGC 3 cut(s) 117, 177, 254
CciI TCATGA 1 cut(s) 519
Cfr13I GGNCC 3 cut(s) 231, 265, 697
Csp6I GTAC 1 cut(s) 629
CviAII CATG 2 cut(s) 520, 601
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 2 cut(s) 317, 472
DpnI GATC 8 cut(s) 5, 39, 47, 277, 360, 371, 605, 718
DpnII GATC 8 cut(s) 3, 37, 45, 275, 358, 369, 603, 716
EaeI YGGCCR 4 cut(s) 26, 113, 587, 647
Eam1104I CTCTTC 4 cut(s) 151, 208, 470, 638
EarI CTCTTC 4 cut(s) 151, 208, 470, 638
Eco47I GGWCC 2 cut(s) 265, 697
Eco57I CTGAAG 2 cut(s) 290, 619
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 411
FaeI CATG 2 cut(s) 523, 604
FaiI YATR 7 cut(s) 521, 581, 602, 616, 618, 709, 711
FaqI GGGAC 1 cut(s) 393
FatI CATG 2 cut(s) 519, 600
FauNDI CATATG 1 cut(s) 616
FbaI TGATCA 1 cut(s) 37
FblI GTMKAC 1 cut(s) 742
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 4 cut(s) 178, 219, 235, 702
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 2 cut(s) 162, 219
GluI GCNGC 1 cut(s) 509
HaeIII GGCC 5 cut(s) 28, 115, 232, 589, 649
HapII CCGG 1 cut(s) 112
Hin1II CATG 2 cut(s) 523, 604
HincII GTYRAC 1 cut(s) 743
HindII GTYRAC 1 cut(s) 743
HinfI GANTC 5 cut(s) 57, 63, 92, 323, 676
HpaII CCGG 1 cut(s) 112
HphI GGTGA 2 cut(s) 101, 490
Hpy166II GTNNAC 2 cut(s) 504, 743
Hpy188I TCNGA 5 cut(s) 37, 62, 309, 363, 374
Hpy188III TCNNGA 3 cut(s) 41, 349, 520
Hpy8I GTNNAC 2 cut(s) 504, 743
Hpy99I CGWCG 2 cut(s) 331, 747
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 2 cut(s) 83, 737
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 4 cut(s) 51, 449, 511, 670
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 253
HpyF3I CTNAG 2 cut(s) 317, 472
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 2 cut(s) 523, 604
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 8 cut(s) 3, 37, 45, 275, 358, 369, 603, 716
LguI GCTCTTC 2 cut(s) 151, 208
Lsp1109I GCAGC 1 cut(s) 495
MaeI CTAG 2 cut(s) 162, 219
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 1 cut(s) 478
MalI GATC 8 cut(s) 5, 39, 47, 277, 360, 371, 605, 718
MboI GATC 8 cut(s) 3, 37, 45, 275, 358, 369, 603, 716
MfeI CAATTG 2 cut(s) 489, 591
MflI RGATCY 2 cut(s) 45, 275
MhlI GDGCHC 1 cut(s) 579
MlsI TGGCCA 3 cut(s) 28, 589, 649
MluCI AATT 6 cut(s) 489, 512, 532, 546, 591, 681
MluNI TGGCCA 3 cut(s) 28, 589, 649
MlyI GAGTC 2 cut(s) 66, 332
MmeI TCCRAC 3 cut(s) 114, 171, 724
Mox20I TGGCCA 3 cut(s) 28, 589, 649
MscI TGGCCA 3 cut(s) 28, 589, 649
MseI TTAA 3 cut(s) 485, 498, 537
Msp20I TGGCCA 3 cut(s) 28, 589, 649
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 413
MunI CAATTG 2 cut(s) 489, 591
MvaI CCWGG 1 cut(s) 413
MwoI GCNNNNNNNGC 2 cut(s) 25, 253
NdeI CATATG 1 cut(s) 616
NdeII GATC 8 cut(s) 3, 37, 45, 275, 358, 369, 603, 716
NlaIII CATG 2 cut(s) 523, 604
NlaIV GGNNCC 1 cut(s) 750
NmuCI GTSAC 1 cut(s) 478
PagI TCATGA 1 cut(s) 519
PciSI GCTCTTC 2 cut(s) 151, 208
PfeI GAWTC 3 cut(s) 63, 92, 676
PkrI GCNGC 1 cut(s) 510
PleI GAGTC 2 cut(s) 65, 331
PpsI GAGTC 2 cut(s) 65, 331
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 3 cut(s) 231, 265, 697
PspPPI RGGWCCY 1 cut(s) 265
PstI CTGCAG 1 cut(s) 672
PsuI RGATCY 2 cut(s) 45, 275
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
SalI GTCGAC 1 cut(s) 741
SapI GCTCTTC 2 cut(s) 151, 208
SaqAI TTAA 3 cut(s) 485, 498, 537
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 8 cut(s) 3, 37, 45, 275, 358, 369, 603, 716
Sau96I GGNCC 3 cut(s) 231, 265, 697
SchI GAGTC 2 cut(s) 66, 332
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 1 cut(s) 579
SetI ASST 7 cut(s) 16, 134, 163, 191, 220, 267, 529
SfcI CTRYAG 1 cut(s) 668
SinI GGWCC 2 cut(s) 265, 697
Sse9I AATT 6 cut(s) 489, 512, 532, 546, 591, 681
SsiI CCGC 1 cut(s) 98
SspMI CTAG 2 cut(s) 162, 219
StyD4I CCNGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 83, 737
TaiI ACGT 1 cut(s) 529
TaqI TCGA 3 cut(s) 102, 348, 742
TaqII GACCGA 1 cut(s) 744
TasI AATT 6 cut(s) 489, 512, 532, 546, 591, 681
TatI WGTACW 1 cut(s) 628
TfiI GAWTC 3 cut(s) 63, 92, 676
Tru1I TTAA 3 cut(s) 485, 498, 537
Tru9I TTAA 3 cut(s) 485, 498, 537
TscAI CASTG 2 cut(s) 88, 643
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 3 cut(s) 368, 508, 536
TspRI CASTG 2 cut(s) 88, 643
VpaK11BI GGWCC 2 cut(s) 265, 697
XapI RAATTY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 687
XmiI GTMKAC 1 cut(s) 742
XspI CTAG 2 cut(s) 162, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.