RchiOBHm_Chr2g0118981

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004920
Physical Location & Seq
Reverse (-)
31253589 .. 31254192
604 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49173

Sequence Viewer

Length: 318 bp
ATGGTTTTTTTCTTTGACAAGGGATTACTTGCAATGGGAAATATCCTCTTCTTCTCAGGGGTGACTTTAACAATTGGATTTAAGTCCACGCTGCAATTCTTCATGAAACGTCAAAATTTTAAGGGGTCAATTTCTTTTGGTGTTATGTTCTTTGTGCTCATAGGGTGGCCAATTGTGGGCATGATTTTGGAGGCATATGGTTTCATTGTACTCTTCATTGGCTTCTGGCCAACATTGGCAGTTTTCCTGCAGAAGATTCCAATTCTAGGATGGGTGCTCCAACAGCCATATATTAGATCGGTATGTTCAGTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

105

Amino Acids

11.94

Weight (kDa)

9.7

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 8 - 87 6.9e-11 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 167, 227
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 176, 266
Alw21I GWGCWC 2 cut(s) 159, 279
AoxI GGCC 2 cut(s) 167, 227
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 73
BalI TGGCCA 2 cut(s) 169, 229
Bbv12I GWGCWC 2 cut(s) 159, 279
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 264
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 248
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 266
Bse3DI GCAATG 1 cut(s) 39
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 2 cut(s) 176, 266
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 2 cut(s) 169, 229
BsiHKAI GWGCWC 2 cut(s) 159, 279
BslI CCNNNNNNNGG 2 cut(s) 176, 266
BsnI GGCC 2 cut(s) 169, 229
Bsp1286I GDGCHC 2 cut(s) 159, 279
Bsp143I GATC 1 cut(s) 296
BspANI GGCC 2 cut(s) 169, 229
BspCNI CTCAG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 39
BssMI GATC 1 cut(s) 296
Bst6I CTCTTC 2 cut(s) 53, 218
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 275
BstKTI GATC 1 cut(s) 299
BstMBI GATC 1 cut(s) 296
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 78
BsuRI GGCC 2 cut(s) 169, 229
BtsCI GGATG 1 cut(s) 275
CciI TCATGA 1 cut(s) 102
Csp6I GTAC 1 cut(s) 209
CviAII CATG 2 cut(s) 103, 181
CviJI RGCY 4 cut(s) 169, 222, 229, 286
CviKI_1 RGCY 4 cut(s) 169, 222, 229, 286
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 55
DpnI GATC 1 cut(s) 298
DpnII GATC 1 cut(s) 296
EaeI YGGCCR 2 cut(s) 167, 227
Eam1104I CTCTTC 2 cut(s) 53, 218
EarI CTCTTC 2 cut(s) 53, 218
FaeI CATG 2 cut(s) 106, 184
FaiI YATR 9 cut(s) 104, 146, 161, 182, 196, 198, 289, 291, 304
FatI CATG 2 cut(s) 102, 180
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 1 cut(s) 266
GluI GCNGC 1 cut(s) 92
HaeIII GGCC 2 cut(s) 169, 229
Hin1II CATG 2 cut(s) 106, 184
HinfI GANTC 1 cut(s) 256
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 32, 94, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 2 cut(s) 106, 184
Kzo9I GATC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 3 cut(s) 42, 211, 260
Lsp1109I GCAGC 1 cut(s) 78
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 298
MboI GATC 1 cut(s) 296
MboII GAAGA 5 cut(s) 40, 43, 91, 205, 265
MfeI CAATTG 2 cut(s) 72, 171
MhlI GDGCHC 2 cut(s) 159, 279
MlsI TGGCCA 2 cut(s) 169, 229
MluCI AATT 6 cut(s) 72, 95, 115, 129, 171, 261
MluNI TGGCCA 2 cut(s) 169, 229
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 2 cut(s) 56, 184
Mox20I TGGCCA 2 cut(s) 169, 229
MscI TGGCCA 2 cut(s) 169, 229
MseI TTAA 3 cut(s) 68, 81, 120
Msp20I TGGCCA 2 cut(s) 169, 229
MunI CAATTG 2 cut(s) 72, 171
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 296
NlaIII CATG 2 cut(s) 106, 184
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 102
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 93
PstI CTGCAG 1 cut(s) 252
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SaqAI TTAA 3 cut(s) 68, 81, 120
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 1 cut(s) 296
SduI GDGCHC 2 cut(s) 159, 279
SetI ASST 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 248
SgeI CNNG 9 cut(s) 31, 41, 69, 100, 115, 193, 238, 259, 278
Sse9I AATT 6 cut(s) 72, 95, 115, 129, 171, 261
SspMI CTAG 1 cut(s) 266
TaiI ACGT 1 cut(s) 112
TasI AATT 6 cut(s) 72, 95, 115, 129, 171, 261
TatI WGTACW 1 cut(s) 208
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 3 cut(s) 68, 81, 120
Tru9I TTAA 3 cut(s) 68, 81, 120
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 4 cut(s) 91, 119, 193, 205
XapI RAATTY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 267
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.