RchiOBHm_Chr4g0396481

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004920
Physical Location & Seq
Reverse (-)
12627156 .. 12627759
604 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36885

Sequence Viewer

Length: 321 bp
ATGGTTTTTTTCTTTGACAAGGGATTACTTGGAATGGGAAATATCCTTTTCTTCTCAGGGGTGACTTTAACAATTGGATTTAAGTCCTCGCTGCAATTCTTCATGAAACGTCAAAATTTTAAGGGGTCAATTTCTTTTGGTGTTGGGTTCTTCTTTCTGCTCATAGGGTGGCCAATTGTGGGCATGATTTTGGAGGCATATGGTTTCATTGTACTCTTCAGTGGCTTCTGGCCAACATTGGCAGTTTTCCTGCAGAAGATTCCAATTATGGGATGGGTGCTTCAACAGCCATATATTAGATCGGTATGTTCAGTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

106

Amino Acids

11.99

Weight (kDa)

9.7

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 8 - 88 6.8e-11 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 170, 230
AcsI RAATTY 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 202
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 2 cut(s) 179, 269
AgsI TTSAA 1 cut(s) 284
AoxI GGCC 2 cut(s) 170, 230
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 73
BalI TGGCCA 2 cut(s) 172, 232
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 269
BseGI GGATG 1 cut(s) 278
BseLI CCNNNNNNNGG 2 cut(s) 179, 269
BseMII CTCAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 2 cut(s) 172, 232
BslI CCNNNNNNNGG 2 cut(s) 179, 269
BsnI GGCC 2 cut(s) 172, 232
Bsp143I GATC 1 cut(s) 299
BspANI GGCC 2 cut(s) 172, 232
BspCNI CTCAG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 255
BssMI GATC 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 221
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 278
BstKTI GATC 1 cut(s) 302
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstSFI CTRYAG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 78
BsuRI GGCC 2 cut(s) 172, 232
BtsCI GGATG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 226
CciI TCATGA 1 cut(s) 102
Csp6I GTAC 1 cut(s) 212
CviAII CATG 2 cut(s) 103, 184
CviJI RGCY 4 cut(s) 172, 225, 232, 289
CviKI_1 RGCY 4 cut(s) 172, 225, 232, 289
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 55
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
EaeI YGGCCR 2 cut(s) 170, 230
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 202
FaeI CATG 2 cut(s) 106, 187
FaiI YATR 9 cut(s) 104, 164, 185, 199, 201, 269, 292, 294, 307
FatI CATG 2 cut(s) 102, 183
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
HaeIII GGCC 2 cut(s) 172, 232
Hin1II CATG 2 cut(s) 106, 187
HinfI GANTC 1 cut(s) 259
HphI GGTGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 2 cut(s) 94, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 2 cut(s) 106, 187
Kzo9I GATC 1 cut(s) 299
LpnPI CCDG 3 cut(s) 42, 214, 263
Lsp1109I GCAGC 1 cut(s) 78
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 5 cut(s) 43, 91, 142, 208, 268
MfeI CAATTG 2 cut(s) 72, 174
MlsI TGGCCA 2 cut(s) 172, 232
MluCI AATT 6 cut(s) 72, 95, 115, 129, 174, 264
MluNI TGGCCA 2 cut(s) 172, 232
MnlI CCTC 2 cut(s) 97, 187
Mox20I TGGCCA 2 cut(s) 172, 232
MscI TGGCCA 2 cut(s) 172, 232
MseI TTAA 3 cut(s) 68, 81, 120
Msp20I TGGCCA 2 cut(s) 172, 232
MunI CAATTG 2 cut(s) 72, 174
MwoI GCNNNNNNNGC 1 cut(s) 286
NdeI CATATG 1 cut(s) 199
NdeII GATC 1 cut(s) 299
NlaIII CATG 2 cut(s) 106, 187
NmuCI GTSAC 1 cut(s) 61
PagI TCATGA 1 cut(s) 102
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 93
PstI CTGCAG 1 cut(s) 255
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SaqAI TTAA 3 cut(s) 68, 81, 120
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 1 cut(s) 299
SetI ASST 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 251
SgeI CNNG 8 cut(s) 31, 41, 69, 100, 115, 196, 241, 262
Sse9I AATT 6 cut(s) 72, 95, 115, 129, 174, 264
TaiI ACGT 1 cut(s) 112
TasI AATT 6 cut(s) 72, 95, 115, 129, 174, 264
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 3 cut(s) 68, 81, 120
Tru9I TTAA 3 cut(s) 68, 81, 120
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 91, 119, 196
TspRI CASTG 1 cut(s) 226
XapI RAATTY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.