MD04G1038200.v1.1

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0010074
Physical Location & Seq
Reverse (-)
4237943 .. 4247620
9678 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1038200.v1.1.491

Sequence Viewer

Length: 1017 bp
ATGGTTACGACAAGAAGAAAGGCGGCGGCGGCGGCCTCTGCAACTCCGGACCCGAAAACGCCTGCAAATGATCGGGATCCCCATTCAATTGCCCGAAATCCCAAAACCCCATTCTCGAGCACCGCCATCACACCCGCCTCAGTCAAATCGGTCTTGTTGCAAGATTGGTGGCTGGTAAAGGGTAAAGGAAAGGGCTTGGCCGTTGGAGGATTTGCTTGTAGAGAGAGACTAGGAGTAAGAGTTTTTTGTTCAGCAGCAATTTCCAAGAGACATTCGGCCACTGTTCTTGAGACAGTAGATGGGATCATGATCACAGTTAGTGGTTGTTTAAATAGGTCTCGCACGCATCAAAATGGCTTTCCATCCGAGCTATACGATCACTTTCTTCTTGGATTTCCTTTTGACTGGGAGGAATATGCTGCTGTTGTCACGGGTGACAATTCAACCGACATAGTTTCTTCAATGAGGAATTCAGCTTATAAAAAGTTCAACGTTTCTTCAGGAACCAACGAGAGTAACTCTTTACCATTCTCTTTAGATGATCTACCAGTGACAAGGGCACGTGATCTGTCAATTTTAAATTTTGGAGACTCTGATTATTGTTCACTAGTAAAGAGCATTTTCAGTGATATACTGAAAACATCCAGGGACAATGCTTCTGGTCATACCGGATCACCAATCGGTTTAAAGATGGAAAATCGTAGTCCAGTGCCAAATGTGGATTCTGGAACAACTGAAACTCCAGCTAAGCATAAGAAGGTTAAGGTTAAGGAGGACAAGAACCCGATGACAGAAGAAAATAAGAAAATTCGCAAGATTCCGCCTAGCTGTAGTGTAGGTGTTCTCACAAGAAGCATGACTAGAAGAAGCATGACTGGGAATGTTTTCCACCCAAGAACGACAAGAAGGAAAGATTACACAAAAACACATGACCAGAAGAAAGCTGTAGCCCACCAGCTTTTCCGTCAAAGGCAACGCCGCAACAAGGAAAAAAAATCGAAGGGCGAAACACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

339

Amino Acids

37.38

Weight (kDa)

9.99

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 51 - 139 5.9e-26 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58210 AT5G02520 AT5G02520 AT5G02520
fragaria_vesca FvH4_4g11320 FvH4_4g11320
malus_domestica MD04G1038200.v1.1
prunus_persica Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1
pyrus_communis pycom04g03110
rosa_chinensis RchiOBHm_Chr4g0407561
rosa_laevigata RLG00000008710
rosa_multiflora Rmu_sc0004841.1_g000004
rosa_roxburghii Rroxscaffold_5G00352180
rosa_rugosa Rorug04G0080400
rosa_samantha Rh4AG145100 Rh4BG143000 Rh4CG151800 Rh4DG139100
rosa_wichuraiana Rw4G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 8 cut(s) 23, 26, 29, 32, 123, 135, 821, 979
AclI AACGTT 1 cut(s) 492
AclWI GGATC 4 cut(s) 71, 84, 311, 679
AcoI YGGCCR 2 cut(s) 198, 276
AcsI RAATTY 3 cut(s) 469, 580, 807
AcuI CTGAAG 1 cut(s) 483
AcvI CACGTG 1 cut(s) 563
AfiI CCNNNNNNNGG 1 cut(s) 985
AgsI TTSAA 4 cut(s) 87, 444, 462, 490
AhlI ACTAGT 1 cut(s) 607
AjnI CCWGG 1 cut(s) 644
AjuI GAANNNNNNNTTGG 4 cut(s) 95, 127, 706, 738
AluBI AGCT 6 cut(s) 370, 476, 746, 828, 944, 958
AluI AGCT 6 cut(s) 370, 476, 746, 828, 944, 958
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 5 cut(s) 220, 262, 284, 342, 582
AlwI GGATC 4 cut(s) 71, 84, 311, 679
Ama87I CYCGRG 1 cut(s) 115
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 3 cut(s) 33, 198, 276
ApeKI GCWGC 2 cut(s) 254, 419
ApoI RAATTY 3 cut(s) 469, 580, 807
Asp700I GAANNNNTTC 1 cut(s) 884
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 2 cut(s) 446, 666
AvaI CYCGRG 1 cut(s) 115
AvaII GGWCC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 562
BamHI GGATCC 1 cut(s) 76
BbrPI CACGTG 1 cut(s) 563
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 266, 406
BccI CCATC 4 cut(s) 134, 293, 370, 685
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 646
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 5 cut(s) 220, 262, 284, 342, 582
BcuI ACTAGT 1 cut(s) 607
BfaI CTAG 4 cut(s) 230, 608, 825, 861
BfmI CTRYAG 2 cut(s) 829, 945
BisI GCNGC 7 cut(s) 24, 27, 30, 33, 255, 420, 979
BlpI GCTNAGC 1 cut(s) 747
BlsI GCNGC 7 cut(s) 25, 28, 31, 34, 256, 421, 980
Bme1390I CCNGG 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 3 cut(s) 51, 78, 505
BmrFI CCNGG 1 cut(s) 646
BmrI ACTGGG 2 cut(s) 415, 885
BmsI GCATC 1 cut(s) 355
BmuI ACTGGG 2 cut(s) 415, 885
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 1 cut(s) 726
Bpu1102I GCTNAGC 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 563
BsaBI GATNNNNATC 2 cut(s) 75, 308
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 645
BsaWI WCCGGW 2 cut(s) 46, 668
BsaXI ACNNNNNCTCC 4 cut(s) 225, 255, 724, 754
Bsc4I CCNNNNNNNGG 1 cut(s) 985
Bse1I ACTGG 4 cut(s) 410, 548, 707, 880
Bse8I GATNNNNATC 2 cut(s) 75, 308
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 2 cut(s) 362, 641
BseJI GATNNNNATC 2 cut(s) 75, 308
BseLI CCNNNNNNNGG 1 cut(s) 985
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 4 cut(s) 410, 548, 707, 880
BseSI GKGCMC 1 cut(s) 562
BseXI GCAGC 2 cut(s) 266, 406
BshFI GGCC 3 cut(s) 35, 200, 278
BsiHKAI GWGCWC 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 2 cut(s) 47, 669
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 1 cut(s) 985
BsmAI GTCTC 5 cut(s) 220, 262, 284, 342, 582
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 3 cut(s) 35, 200, 278
Bso31I GGTCTC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 115
Bsp1286I GDGCHC 2 cut(s) 122, 562
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 8 cut(s) 70, 76, 303, 309, 376, 541, 565, 671
Bsp1720I GCTNAGC 1 cut(s) 747
BspACI CCGC 8 cut(s) 23, 26, 29, 32, 123, 135, 821, 979
BspANI GGCC 3 cut(s) 35, 200, 278
BspCNI CTCAG 1 cut(s) 152
BspEI TCCGGA 1 cut(s) 46
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 3 cut(s) 51, 78, 505
BspPI GGATC 4 cut(s) 71, 84, 311, 679
BspTNI GGTCTC 1 cut(s) 342
BsrI ACTGG 4 cut(s) 410, 548, 707, 880
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 8 cut(s) 70, 76, 303, 309, 376, 541, 565, 671
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 3 cut(s) 283, 295, 316
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 63, 344
BstDEI CTNAG 2 cut(s) 139, 747
BstF5I GGATG 2 cut(s) 362, 641
BstKTI GATC 8 cut(s) 73, 79, 306, 312, 379, 544, 568, 674
BstMAI GTCTC 5 cut(s) 220, 262, 284, 342, 582
BstMBI GATC 8 cut(s) 70, 76, 303, 309, 376, 541, 565, 671
BstMWI GCNNNNNNNGC 3 cut(s) 29, 32, 38
BstNI CCWGG 1 cut(s) 646
BstSCI CCNGG 1 cut(s) 644
BstSFI CTRYAG 2 cut(s) 829, 945
BstSLI GKGCMC 1 cut(s) 562
BstV1I GCAGC 2 cut(s) 266, 406
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 3 cut(s) 35, 200, 278
BtsCI GGATG 2 cut(s) 362, 641
BtsIMutI CAGTG 4 cut(s) 279, 555, 631, 714
Cac8I GCNNGC 2 cut(s) 63, 344
CciI TCATGA 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 49
CspCI CAANNNNNGTGG 4 cut(s) 149, 184, 268, 303
CviAII CATG 4 cut(s) 307, 856, 871, 929
DdeI CTNAG 2 cut(s) 139, 747
DpnI GATC 8 cut(s) 72, 78, 305, 311, 378, 543, 567, 673
DpnII GATC 8 cut(s) 70, 76, 303, 309, 376, 541, 565, 671
DraI TTTAAA 3 cut(s) 330, 579, 687
EaeI YGGCCR 2 cut(s) 198, 276
EciI GGCGGA 1 cut(s) 810
Eco31I GGTCTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 483
Eco72I CACGTG 1 cut(s) 563
Eco88I CYCGRG 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 644
FaeI CATG 4 cut(s) 310, 859, 874, 932
FaqI GGGAC 1 cut(s) 662
FatI CATG 4 cut(s) 306, 855, 870, 928
FauI CCCGC 1 cut(s) 142
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 7 cut(s) 24, 27, 30, 33, 255, 420, 979
FokI GGATG 2 cut(s) 349, 628
Fsp4HI GCNGC 7 cut(s) 24, 27, 30, 33, 255, 420, 979
FspBI CTAG 4 cut(s) 230, 608, 825, 861
GluI GCNGC 7 cut(s) 24, 27, 30, 33, 255, 420, 979
GsuI CTGGAG 1 cut(s) 726
HaeIII GGCC 3 cut(s) 35, 200, 278
HapII CCGG 2 cut(s) 47, 669
Hin1II CATG 4 cut(s) 310, 859, 874, 932
HinfI GANTC 3 cut(s) 590, 722, 817
HpaII CCGG 2 cut(s) 47, 669
HphI GGTGA 2 cut(s) 446, 666
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 2 cut(s) 367, 595
Hpy188III TCNNGA 7 cut(s) 47, 74, 115, 287, 307, 501, 726
Hpy8I GTNNAC 1 cut(s) 605
HpyAV CCTTC 3 cut(s) 751, 900, 994
HpyCH4III ACNGT 3 cut(s) 283, 295, 316
HpyCH4IV ACGT 2 cut(s) 492, 562
HpyCH4V TGCA 3 cut(s) 41, 65, 160
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 32, 38
HpyF3I CTNAG 2 cut(s) 139, 747
HpySE526I ACGT 2 cut(s) 492, 562
Hsp92II CATG 4 cut(s) 310, 859, 874, 932
Kpn2I TCCGGA 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 8 cut(s) 70, 76, 303, 309, 376, 541, 565, 671
Lsp1109I GCAGC 2 cut(s) 266, 406
LweI GCATC 1 cut(s) 355
MaeI CTAG 4 cut(s) 230, 608, 825, 861
MaeII ACGT 2 cut(s) 492, 562
MaeIII GTNAC 5 cut(s) 4, 427, 434, 515, 550
MalI GATC 8 cut(s) 72, 78, 305, 311, 378, 543, 567, 673
MboI GATC 8 cut(s) 70, 76, 303, 309, 376, 541, 565, 671
MboII GAAGA 7 cut(s) 27, 377, 450, 489, 806, 876, 949
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 122, 562
MluCI AATT 7 cut(s) 87, 258, 439, 469, 573, 580, 807
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 6 cut(s) 46, 148, 200, 403, 459, 766
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 884
MseI TTAA 5 cut(s) 329, 578, 686, 762, 768
MslI CAYNNNNRTG 1 cut(s) 351
MspI CCGG 2 cut(s) 47, 669
MspR9I CCNGG 1 cut(s) 646
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 646
MwoI GCNNNNNNNGC 3 cut(s) 29, 32, 38
NdeII GATC 8 cut(s) 70, 76, 303, 309, 376, 541, 565, 671
NlaIII CATG 4 cut(s) 310, 859, 874, 932
NlaIV GGNNCC 3 cut(s) 51, 78, 505
NmuCI GTSAC 3 cut(s) 427, 434, 550
PaeR7I CTCGAG 1 cut(s) 115
PagI TCATGA 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 884
PfeI GAWTC 2 cut(s) 722, 817
PkrI GCNGC 7 cut(s) 25, 28, 31, 34, 256, 421, 980
PleI GAGTC 1 cut(s) 584
PmaCI CACGTG 1 cut(s) 563
PmlI CACGTG 1 cut(s) 563
PpsI GAGTC 1 cut(s) 584
Ppu21I YACGTR 1 cut(s) 563
PsiI TTATAA 1 cut(s) 480
Psp1406I AACGTT 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 644
PspCI CACGTG 1 cut(s) 563
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 3 cut(s) 51, 78, 505
PspPI GGNCC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 5 cut(s) 329, 578, 686, 762, 768
SatI GCNGC 7 cut(s) 24, 27, 30, 33, 255, 420, 979
Sau3AI GATC 8 cut(s) 70, 76, 303, 309, 376, 541, 565, 671
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 646
SduI GDGCHC 2 cut(s) 122, 562
SfaNI GCATC 1 cut(s) 355
SfcI CTRYAG 2 cut(s) 829, 945
Sfr274I CTCGAG 1 cut(s) 115
SinI GGWCC 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 2 cut(s) 115, 287
SmoI CTYRAG 2 cut(s) 115, 287
SpeI ACTAGT 1 cut(s) 607
Sse9I AATT 7 cut(s) 87, 258, 439, 469, 573, 580, 807
SsiI CCGC 8 cut(s) 23, 26, 29, 32, 123, 135, 821, 979
SspMI CTAG 4 cut(s) 230, 608, 825, 861
StyD4I CCNGG 1 cut(s) 644
TaaI ACNGT 3 cut(s) 283, 295, 316
TaiI ACGT 2 cut(s) 495, 565
TaqI TCGA 2 cut(s) 116, 998
TaqII GACCGA 1 cut(s) 139
TasI AATT 7 cut(s) 87, 258, 439, 469, 573, 580, 807
TauI GCSGC 5 cut(s) 26, 29, 32, 35, 981
TfiI GAWTC 2 cut(s) 722, 817
Tru1I TTAA 5 cut(s) 329, 578, 686, 762, 768
Tru9I TTAA 5 cut(s) 329, 578, 686, 762, 768
TscAI CASTG 4 cut(s) 286, 555, 631, 714
TseFI GTSAC 3 cut(s) 427, 434, 550
TseI GCWGC 2 cut(s) 254, 419
Tsp45I GTSAC 3 cut(s) 427, 434, 550
TspGWI ACGGA 1 cut(s) 953
TspRI CASTG 4 cut(s) 286, 555, 631, 714
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 3 cut(s) 469, 580, 807
XhoI CTCGAG 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 884
XspI CTAG 4 cut(s) 230, 608, 825, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.