Rroxscaffold_5G00352180

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010074
Physical Location & Seq
Forward (+)
29183022 .. 29185762
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352180.1

Sequence Viewer

Length: 1008 bp
ATGGTGTCCACCAGAAGAACGTCGGCCTCTGCAACGCCGCCCCAACATTGTTCAAATACCCGAATCCTCAAAACCCCATTTTCTACCCCCAAAACCATCTCTGCCTCCGTCAAATCGGTATTATTGGATGATTGGTGGCTGGTCAAGACTCAAGGAAAGGGCATGGCTGTCGAAGGCTTGGCTAAAATACATTTGAATCATAAAAGTGCAGCTAACAAGTGTCTTGTATATCCAGCTGCAATTAAAGAGCTATATCAGCAAGCTGTGGCTGTTTGTGTTTCTTCTACCAGTTTATTACTTGATCCACCTATGATGGTTTTACCACCCTTTATAAAGAGACCTGCAATAAGAACTTTTAGCTCGGCAGCAATTTCAAAGAGACATACTGCCACAATTCTTGAGACAACAGATGGCATCATTGTTACACTCTGTGGTTTTTTAAATATCTCCCGCACAAGTCAAAATGGTTTTCTTCCTGAGGTATACAATCGCTATCTGCTTGGATTTCCATATGACTGGGAGGAGCATGCAGCTGGTTTATTGGTTCAAGGTTCTACTGACAAAAGTGCCTCAACCAGAAATTCATCGTCTCAGAAATTCAACATGTTTTTAGAAGACAGTGAAAGCAATCCGCTACCATTTTCTATAGCTGATGTTCCAGTGACAGTTACACGTGATTTTATAATGTCTTGTGTTGGAGATTCTGAACAATTGAAGACCATTTACAGTGATATACTGAGAACATCCGGGGACAATGTTTTTGGGGATACCACTCCGCAAATCAACTCAAACATGGAAGATAGTCATCCAGTTGAAAATGTGAAATCTGGACGAAATGAAACACCAACCATGGCTAAGAAGGTTCAGATTGATGATAATAAAAACAAGACTACAGGCACACGTTTGAAAGGCAGCCAGAAATCTAAGGGAATGTATTCCAGAAGAAACCAGACCAGCACGAAATCTGTACCCACAAGATCAAGCGCCAGGCTGAAGAATTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

335

Amino Acids

36.83

Weight (kDa)

9.59

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 117 - 175 5e-16 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58210 AT5G02520 AT5G02520 AT5G02520
fragaria_vesca FvH4_4g11320 FvH4_4g11320
malus_domestica MD04G1038200.v1.1
prunus_persica Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1
pyrus_communis pycom04g03110
rosa_chinensis RchiOBHm_Chr4g0407561
rosa_laevigata RLG00000008710
rosa_multiflora Rmu_sc0004841.1_g000004
rosa_roxburghii Rroxscaffold_5G00352180
rosa_rugosa Rorug04G0080400
rosa_samantha Rh4AG145100 Rh4BG143000 Rh4CG151800 Rh4DG139100
rosa_wichuraiana Rw4G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 332, 683
Acc36I ACCTGC 1 cut(s) 349
AccI GTMKAC 1 cut(s) 483
AciI CCGC 4 cut(s) 38, 451, 632, 776
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 3 cut(s) 580, 596, 997
AcvI CACGTG 1 cut(s) 674
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 1 cut(s) 969
AflIII ACRYGT 3 cut(s) 603, 671, 899
AgsI TTSAA 9 cut(s) 54, 196, 375, 548, 601, 715, 815, 907, 1003
AjnI CCWGG 1 cut(s) 986
AluBI AGCT 7 cut(s) 212, 236, 250, 263, 360, 533, 650
AluI AGCT 7 cut(s) 212, 236, 250, 263, 360, 533, 650
Alw26I GTCTC 4 cut(s) 331, 373, 395, 594
AlwI GGATC 1 cut(s) 296
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 5 cut(s) 209, 236, 365, 530, 912
ApoI RAATTY 3 cut(s) 580, 596, 997
ArsI GACNNNNNNTTYG 2 cut(s) 743, 775
Asp700I GAANNNNTTC 1 cut(s) 934
AspLEI GCGC 1 cut(s) 986
AsuC2I CCSGG 1 cut(s) 748
AxyI CCTNAGG 1 cut(s) 477
BarI GAAGNNNNNNTAC 2 cut(s) 707, 739
BbrPI CACGTG 1 cut(s) 674
BbsI GAAGAC 2 cut(s) 621, 722
BbvI GCAGC 5 cut(s) 221, 223, 377, 542, 924
BccI CCATC 3 cut(s) 104, 307, 404
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 988
BciVI GTATCC 1 cut(s) 760
BcnI CCSGG 1 cut(s) 748
BcoDI GTCTC 4 cut(s) 331, 373, 395, 594
BfmI CTRYAG 2 cut(s) 645, 891
BfoI RGCGCY 1 cut(s) 987
BfuAI ACCTGC 1 cut(s) 349
BfuI GTATCC 1 cut(s) 760
BisI GCNGC 6 cut(s) 38, 210, 237, 366, 531, 913
BlsI GCNGC 6 cut(s) 39, 211, 238, 367, 532, 914
Bme1390I CCNGG 2 cut(s) 748, 988
BmrFI CCNGG 2 cut(s) 748, 988
BmrI ACTGGG 1 cut(s) 526
BmsI GCATC 1 cut(s) 423
BmuI ACTGGG 1 cut(s) 526
BpiI GAAGAC 2 cut(s) 621, 722
BpuEI CTTGAG 2 cut(s) 135, 419
BpuMI CCSGG 1 cut(s) 748
BsaAI YACGTR 1 cut(s) 674
BsaBI GATNNNNATC 1 cut(s) 804
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 747, 849
Bse1I ACTGG 4 cut(s) 288, 521, 659, 809
Bse21I CCTNAGG 1 cut(s) 477
Bse8I GATNNNNATC 1 cut(s) 804
BseBI CCWGG 1 cut(s) 988
BseDI CCNNGG 2 cut(s) 747, 849
BseGI GGATG 3 cut(s) 133, 743, 805
BseJI GATNNNNATC 1 cut(s) 804
BseMII CTCAG 3 cut(s) 468, 605, 728
BseNI ACTGG 4 cut(s) 288, 521, 659, 809
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 5 cut(s) 221, 223, 377, 542, 924
BsgI GTGCAG 1 cut(s) 228
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 747
BslFI GGGAC 1 cut(s) 764
BsmAI GTCTC 4 cut(s) 331, 373, 395, 594
BsmBI CGTCTC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 764
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 301, 977
Bsp19I CCATGG 1 cut(s) 849
BspACI CCGC 4 cut(s) 38, 451, 632, 776
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 469, 604, 729
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 331
BsrI ACTGG 4 cut(s) 288, 521, 659, 809
BssECI CCNNGG 2 cut(s) 747, 849
BssMI GATC 2 cut(s) 301, 977
BssNAI GTATAC 1 cut(s) 484
BssT1I CCWWGG 1 cut(s) 849
Bst1107I GTATAC 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 988
Bst4CI ACNGT 3 cut(s) 620, 667, 728
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 261, 528
BstDEI CTNAG 5 cut(s) 477, 591, 737, 855, 924
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 3 cut(s) 133, 743, 805
BstH2I RGCGCY 1 cut(s) 987
BstHHI GCGC 1 cut(s) 986
BstKTI GATC 2 cut(s) 304, 980
BstMAI GTCTC 4 cut(s) 331, 373, 395, 594
BstMBI GATC 2 cut(s) 301, 977
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 988
BstNSI RCATGY 2 cut(s) 530, 607
BstSCI CCNGG 2 cut(s) 746, 986
BstSFI CTRYAG 2 cut(s) 645, 891
BstV1I GCAGC 5 cut(s) 221, 223, 377, 542, 924
BstV2I GAAGAC 2 cut(s) 621, 722
BstXI CCANNNNNNTGG 1 cut(s) 516
BstZ17I GTATAC 1 cut(s) 484
Bsu36I CCTNAGG 1 cut(s) 477
BsuI GTATCC 1 cut(s) 760
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 849
BtsCI GGATG 3 cut(s) 133, 743, 805
BtsIMutI CAGTG 3 cut(s) 625, 666, 733
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 261, 528
CfoI GCGC 1 cut(s) 986
Csp6I GTAC 1 cut(s) 968
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 5 cut(s) 163, 527, 604, 793, 850
CviQI GTAC 1 cut(s) 968
DdeI CTNAG 5 cut(s) 477, 591, 737, 855, 924
DpnI GATC 2 cut(s) 303, 979
DpnII GATC 2 cut(s) 301, 977
DraI TTTAAA 1 cut(s) 441
DraIII CACNNNGTG 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 849
Eco31I GGTCTC 1 cut(s) 331
Eco72I CACGTG 1 cut(s) 674
Eco81I CCTNAGG 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 986
EcoT14I CCWWGG 1 cut(s) 849
ErhI CCWWGG 1 cut(s) 849
Esp3I CGTCTC 1 cut(s) 594
FaeI CATG 5 cut(s) 166, 530, 607, 796, 853
FaqI GGGAC 1 cut(s) 764
FatI CATG 5 cut(s) 162, 526, 603, 792, 849
FauI CCCGC 1 cut(s) 458
FauNDI CATATG 1 cut(s) 511
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 6 cut(s) 38, 210, 237, 366, 531, 913
FokI GGATG 3 cut(s) 140, 730, 792
Fsp4HI GCNGC 6 cut(s) 38, 210, 237, 366, 531, 913
GlaI GCGC 1 cut(s) 985
GluI GCNGC 6 cut(s) 38, 210, 237, 366, 531, 913
HaeII RGCGCY 1 cut(s) 987
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 747
HhaI GCGC 1 cut(s) 986
Hin1II CATG 5 cut(s) 166, 530, 607, 796, 853
Hin6I GCGC 1 cut(s) 984
HinP1I GCGC 1 cut(s) 984
HinfI GANTC 4 cut(s) 63, 148, 196, 701
HpaII CCGG 1 cut(s) 747
Hpy166II GTNNAC 2 cut(s) 9, 484
Hpy188I TCNGA 3 cut(s) 594, 706, 867
Hpy188III TCNNGA 5 cut(s) 145, 398, 476, 828, 939
Hpy8I GTNNAC 2 cut(s) 9, 484
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 167, 853
HpyCH4III ACNGT 3 cut(s) 620, 667, 728
HpyCH4IV ACGT 3 cut(s) 20, 673, 901
HpyCH4V TGCA 5 cut(s) 32, 209, 239, 344, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 5 cut(s) 477, 591, 737, 855, 924
HpySE526I ACGT 3 cut(s) 20, 673, 901
Hsp92II CATG 5 cut(s) 166, 530, 607, 796, 853
HspAI GCGC 1 cut(s) 984
Kzo9I GATC 2 cut(s) 301, 977
LmnI GCTCC 1 cut(s) 523
Lsp1109I GCAGC 5 cut(s) 221, 223, 377, 542, 924
LweI GCATC 1 cut(s) 423
MaeII ACGT 3 cut(s) 20, 673, 901
MaeIII GTNAC 3 cut(s) 421, 661, 667
MalI GATC 2 cut(s) 303, 979
MboI GATC 2 cut(s) 301, 977
MboII GAAGA 8 cut(s) 27, 273, 464, 626, 727, 809, 954, 1006
MfeI CAATTG 1 cut(s) 710
MluCI AATT 7 cut(s) 240, 369, 393, 580, 596, 710, 997
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 676
MnlI CCTC 6 cut(s) 37, 77, 115, 472, 514, 580
MroXI GAANNNNTTC 1 cut(s) 934
MseI TTAA 2 cut(s) 243, 440
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 236, 533
MspI CCGG 1 cut(s) 747
MspR9I CCNGG 2 cut(s) 748, 988
MunI CAATTG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 988
MwoI GCNNNNNNNGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 748
NcoI CCATGG 1 cut(s) 849
NdeI CATATG 1 cut(s) 511
NdeII GATC 2 cut(s) 301, 977
NlaIII CATG 5 cut(s) 166, 530, 607, 796, 853
NmeAIII GCCGAG 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 661
NspI RCATGY 2 cut(s) 530, 607
PaeI GCATGC 1 cut(s) 530
PciI ACATGT 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 934
PfeI GAWTC 3 cut(s) 63, 196, 701
PkrI GCNGC 6 cut(s) 39, 211, 238, 367, 532, 914
PleI GAGTC 1 cut(s) 142
PmaCI CACGTG 1 cut(s) 674
PmlI CACGTG 1 cut(s) 674
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 674
PscI ACATGT 1 cut(s) 603
PsiI TTATAA 2 cut(s) 332, 683
Psp6I CCWGG 1 cut(s) 986
PspCI CACGTG 1 cut(s) 674
PspGI CCWGG 1 cut(s) 986
PvuII CAGCTG 2 cut(s) 236, 533
RsaI GTAC 1 cut(s) 969
RsaNI GTAC 1 cut(s) 968
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 243, 440
SatI GCNGC 6 cut(s) 38, 210, 237, 366, 531, 913
Sau3AI GATC 2 cut(s) 301, 977
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 748, 988
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 2 cut(s) 645, 891
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 150, 398
SmoI CTYRAG 2 cut(s) 150, 398
SphI GCATGC 1 cut(s) 530
Sse9I AATT 7 cut(s) 240, 369, 393, 580, 596, 710, 997
SsiI CCGC 4 cut(s) 38, 451, 632, 776
StyD4I CCNGG 2 cut(s) 746, 986
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 3 cut(s) 620, 667, 728
TaiI ACGT 3 cut(s) 23, 676, 904
TaqI TCGA 1 cut(s) 171
TasI AATT 7 cut(s) 240, 369, 393, 580, 596, 710, 997
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 3 cut(s) 63, 196, 701
Tru1I TTAA 2 cut(s) 243, 440
Tru9I TTAA 2 cut(s) 243, 440
TscAI CASTG 3 cut(s) 625, 666, 733
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 5 cut(s) 209, 236, 365, 530, 912
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 2 cut(s) 573, 852
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 3 cut(s) 625, 666, 733
XapI RAATTY 3 cut(s) 580, 596, 997
XceI RCATGY 2 cut(s) 530, 607
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.