Rh4AG145100

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010074
Physical Location & Seq
Forward (+)
36750848 .. 36753211
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG145100.1

Sequence Viewer

Length: 864 bp
ATGGTGTCCACCAGAAGAGCGTCGGCCTCTGCAACGCCGCCCCAACCTTATTCAAATACCCGAATCCTCAAAACCCCATTTTCTACCCCCAAAACCATCTCTGCCTCCGTCAAATCGGTATTATTGGATGATTGGTGGCTGGTCAAGGGTCAAGGAAAGGGATTGGCTGTCGAAGGCTTGGCTAAAACACAGAGACCAGCAATAAGAACTTTTAGCTCGGCAGCAATTTCAAAGAGACATACCGCCACAATTCTTGAGACAACAGATGGCATCATTGTTACACTCTGTGGTTTCTTAAATATCTCCCGCACAGGTCAAAATGGTTTTCCGCCCGAGGTATACAATCGCTATCTGCTTGGATTTCCATATGACTGGGAGGAGCATGCAGCTGGTTTATTGGTTCAAGGTTCTACTGACAAAAGTGCCTCAGCCAGAAATTCATCGTCTCAGAAGTTCAACAGGTTTTTAGAAGACAGTGAAAGTAATCCGTTACCATTTTCTATAGCTGATGTCCCAGCGACAGTTACACGTGATTTTATAATGTCTTGTGTTGGAGATTCTGAACAATTGAAGACCATATTCGGTGATATACTGAGAACATCCGGGGACAATGTTTTTGGGGATACCACTCCGCAAATCAACTCAAACGTGGAAGATAGTCATCCAATTGAAAATGTGAAATCTGGACGAAATGAAACACCCACCATGGCTAAGAAGGTTCGGATTGATGATGACAAAAACAAGACTACAGACACATGTTTAAAAGGCAGCCAGAAATCTAAGGGAATGTGTTCCGGAAGAAACCAGACCAGCATGAAATCTGTACCCACAAGATCAAGCGCCAGGCTGAAGAATTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

287

Amino Acids

31.3

Weight (kDa)

9.49

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 40 - 127 8e-25 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58210 AT5G02520 AT5G02520 AT5G02520
fragaria_vesca FvH4_4g11320 FvH4_4g11320
malus_domestica MD04G1038200.v1.1
prunus_persica Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1
pyrus_communis pycom04g03110
rosa_chinensis RchiOBHm_Chr4g0407561
rosa_laevigata RLG00000008710
rosa_multiflora Rmu_sc0004841.1_g000004
rosa_roxburghii Rroxscaffold_5G00352180
rosa_rugosa Rorug04G0080400
rosa_samantha Rh4AG145100 Rh4BG143000 Rh4CG151800 Rh4DG139100
rosa_wichuraiana Rw4G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AccI GTMKAC 1 cut(s) 339
AccIII TCCGGA 1 cut(s) 794
AciI CCGC 5 cut(s) 38, 243, 307, 329, 632
AcsI RAATTY 2 cut(s) 436, 853
AcvI CACGTG 1 cut(s) 530
AdeI CACNNNGTG 1 cut(s) 287
AfaI GTAC 1 cut(s) 825
AflIII ACRYGT 2 cut(s) 527, 755
AgsI TTSAA 7 cut(s) 54, 231, 404, 457, 571, 671, 859
AjnI CCWGG 1 cut(s) 842
AluBI AGCT 3 cut(s) 216, 389, 506
AluI AGCT 3 cut(s) 216, 389, 506
Alw26I GTCTC 4 cut(s) 187, 229, 251, 450
Ama87I CYCGRG 1 cut(s) 332
Aor13HI TCCGGA 1 cut(s) 794
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 221, 386, 768
ApoI RAATTY 2 cut(s) 436, 853
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
Asp700I GAANNNNTTC 1 cut(s) 790
AspLEI GCGC 1 cut(s) 842
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 1 cut(s) 596
AvaI CYCGRG 1 cut(s) 332
BbrPI CACGTG 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 477, 578
BbvCI CCTCAGC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 233, 398, 780
BccI CCATC 2 cut(s) 104, 260
BciT130I CCWGG 1 cut(s) 844
BciVI GTATCC 1 cut(s) 616
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 4 cut(s) 187, 229, 251, 450
BfmI CTRYAG 2 cut(s) 501, 747
BfoI RGCGCY 1 cut(s) 843
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 4 cut(s) 38, 222, 387, 769
BlsI GCNGC 4 cut(s) 39, 223, 388, 770
Bme1390I CCNGG 2 cut(s) 604, 844
BmeT110I CYCGRG 1 cut(s) 332
BmrFI CCNGG 2 cut(s) 604, 844
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 477, 578
Bpu10I CCTNAGC 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 604
BsaAI YACGTR 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 660
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 3 cut(s) 333, 603, 705
BsaWI WCCGGW 1 cut(s) 794
Bse1I ACTGG 1 cut(s) 377
Bse8I GATNNNNATC 1 cut(s) 660
BseAI TCCGGA 1 cut(s) 794
BseBI CCWGG 1 cut(s) 844
BseDI CCNNGG 3 cut(s) 333, 603, 705
BseGI GGATG 3 cut(s) 133, 599, 661
BseJI GATNNNNATC 1 cut(s) 660
BseMII CTCAG 3 cut(s) 441, 461, 584
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 233, 398, 780
BseYI CCCAGC 1 cut(s) 514
BshFI GGCC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 2 cut(s) 603, 795
BslFI GGGAC 2 cut(s) 497, 620
BsmAI GTCTC 4 cut(s) 187, 229, 251, 450
BsmBI CGTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 497, 620
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 332
Bsp13I TCCGGA 1 cut(s) 794
Bsp143I GATC 1 cut(s) 833
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 5 cut(s) 38, 243, 307, 329, 632
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 440, 460, 585
BspEI TCCGGA 1 cut(s) 794
BspQI GCTCTTC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 333, 603, 705
BssMI GATC 1 cut(s) 833
BssNAI GTATAC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 705
Bst1107I GTATAC 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 844
Bst4CI ACNGT 2 cut(s) 476, 523
Bst6I CTCTTC 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 427, 447, 593, 711, 780
BstDSI CCRYGG 1 cut(s) 705
BstF5I GGATG 3 cut(s) 133, 599, 661
BstH2I RGCGCY 1 cut(s) 843
BstHHI GCGC 1 cut(s) 842
BstKTI GATC 1 cut(s) 836
BstMAI GTCTC 4 cut(s) 187, 229, 251, 450
BstMBI GATC 1 cut(s) 833
BstNI CCWGG 1 cut(s) 844
BstNSI RCATGY 2 cut(s) 386, 759
BstSCI CCNGG 2 cut(s) 602, 842
BstSFI CTRYAG 2 cut(s) 501, 747
BstV1I GCAGC 3 cut(s) 233, 398, 780
BstV2I GAAGAC 2 cut(s) 477, 578
BstXI CCANNNNNNTGG 1 cut(s) 372
BstZ17I GTATAC 1 cut(s) 340
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 705
BtsCI GGATG 3 cut(s) 133, 599, 661
BtsIMutI CAGTG 1 cut(s) 481
Cac8I GCNNGC 1 cut(s) 384
CfoI GCGC 1 cut(s) 842
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 824
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 4 cut(s) 383, 706, 756, 814
CviQI GTAC 1 cut(s) 824
DdeI CTNAG 5 cut(s) 427, 447, 593, 711, 780
DpnI GATC 1 cut(s) 835
DpnII GATC 1 cut(s) 833
DraI TTTAAA 1 cut(s) 762
DraIII CACNNNGTG 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 187
Eco72I CACGTG 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 842
EcoT14I CCWWGG 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 705
Esp3I CGTCTC 1 cut(s) 450
FaeI CATG 4 cut(s) 386, 709, 759, 817
FaqI GGGAC 2 cut(s) 497, 620
FatI CATG 4 cut(s) 382, 705, 755, 813
FauI CCCGC 1 cut(s) 314
FauNDI CATATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 38, 222, 387, 769
FokI GGATG 3 cut(s) 140, 586, 648
Fsp4HI GCNGC 4 cut(s) 38, 222, 387, 769
GlaI GCGC 1 cut(s) 841
GluI GCNGC 4 cut(s) 38, 222, 387, 769
GsaI CCCAGC 1 cut(s) 518
HaeII RGCGCY 1 cut(s) 843
HaeIII GGCC 1 cut(s) 26
HapII CCGG 2 cut(s) 603, 795
HgaI GACGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 842
Hin1II CATG 4 cut(s) 386, 709, 759, 817
Hin6I GCGC 1 cut(s) 840
HinP1I GCGC 1 cut(s) 840
HinfI GANTC 2 cut(s) 63, 557
HpaII CCGG 2 cut(s) 603, 795
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 2 cut(s) 9, 340
Hpy188I TCNGA 3 cut(s) 450, 562, 723
Hpy188III TCNNGA 3 cut(s) 254, 684, 795
Hpy8I GTNNAC 2 cut(s) 9, 340
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 167, 709
HpyCH4III ACNGT 2 cut(s) 476, 523
HpyCH4IV ACGT 2 cut(s) 529, 648
HpyCH4V TGCA 2 cut(s) 32, 386
HpyF3I CTNAG 5 cut(s) 427, 447, 593, 711, 780
HpySE526I ACGT 2 cut(s) 529, 648
Hsp92II CATG 4 cut(s) 386, 709, 759, 817
HspAI GCGC 1 cut(s) 840
Kpn2I TCCGGA 1 cut(s) 794
Kzo9I GATC 1 cut(s) 833
LguI GCTCTTC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 3 cut(s) 233, 398, 780
LweI GCATC 1 cut(s) 279
MaeII ACGT 2 cut(s) 529, 648
MaeIII GTNAC 3 cut(s) 277, 489, 523
MalI GATC 1 cut(s) 835
MboI GATC 1 cut(s) 833
MboII GAAGA 6 cut(s) 27, 482, 583, 665, 810, 862
MfeI CAATTG 2 cut(s) 566, 666
MluCI AATT 6 cut(s) 225, 249, 436, 566, 666, 853
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 6 cut(s) 37, 77, 115, 328, 370, 436
MroI TCCGGA 1 cut(s) 794
MroXI GAANNNNTTC 1 cut(s) 790
MseI TTAA 2 cut(s) 296, 761
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 2 cut(s) 603, 795
MspR9I CCNGG 2 cut(s) 604, 844
MunI CAATTG 2 cut(s) 566, 666
MvaI CCWGG 1 cut(s) 844
NciI CCSGG 1 cut(s) 604
NcoI CCATGG 1 cut(s) 705
NdeI CATATG 1 cut(s) 367
NdeII GATC 1 cut(s) 833
NlaIII CATG 4 cut(s) 386, 709, 759, 817
NmeAIII GCCGAG 1 cut(s) 197
NspI RCATGY 2 cut(s) 386, 759
PaeI GCATGC 1 cut(s) 386
PciI ACATGT 1 cut(s) 755
PciSI GCTCTTC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 790
PfeI GAWTC 2 cut(s) 63, 557
PkrI GCNGC 4 cut(s) 39, 223, 388, 770
PmaCI CACGTG 1 cut(s) 530
PmlI CACGTG 1 cut(s) 530
Ppu21I YACGTR 1 cut(s) 530
PscI ACATGT 1 cut(s) 755
PsiI TTATAA 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 842
PspCI CACGTG 1 cut(s) 530
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 842
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 825
RsaNI GTAC 1 cut(s) 824
SapI GCTCTTC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 296, 761
SatI GCNGC 4 cut(s) 38, 222, 387, 769
Sau3AI GATC 1 cut(s) 833
ScrFI CCNGG 2 cut(s) 604, 844
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 2 cut(s) 501, 747
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SphI GCATGC 1 cut(s) 386
Sse9I AATT 6 cut(s) 225, 249, 436, 566, 666, 853
SsiI CCGC 5 cut(s) 38, 243, 307, 329, 632
StyD4I CCNGG 2 cut(s) 602, 842
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 2 cut(s) 476, 523
TaiI ACGT 2 cut(s) 532, 651
TaqI TCGA 1 cut(s) 171
TasI AATT 6 cut(s) 225, 249, 436, 566, 666, 853
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 2 cut(s) 63, 557
Tru1I TTAA 2 cut(s) 296, 761
Tru9I TTAA 2 cut(s) 296, 761
TscAI CASTG 1 cut(s) 481
TseI GCWGC 3 cut(s) 221, 386, 768
TspDTI ATGAA 3 cut(s) 429, 708, 830
TspGWI ACGGA 2 cut(s) 97, 477
TspRI CASTG 1 cut(s) 481
XapI RAATTY 2 cut(s) 436, 853
XceI RCATGY 2 cut(s) 386, 759
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.