FvH4_4g11320

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010074
Physical Location & Seq
Forward (+)
15093560 .. 15095947
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11320.t2

Sequence Viewer

Length: 861 bp
ATGACTTCAACGCCGCCGCCCCCATTTTCTGCCCCCAGAACCGTCTCTGCCTCCCTCAAATCGGTTTTGTTGGATGATTGGTGGCTCGTCAAGGCTCAAGGAAACAACGCCTTGGCTGTTGAAGGCTTCGCTAGATCACTGAGACCTGCAATAAGAACTTTTAGCTCGGCAGCAATTTCAAAGAGACATACTGCCACAACTCTTGAGACAATAGATGGCATTATTGTTACACTCTGTGGATTATTAAATATCTCCCGCACTAGTCAAAATGGTTTTCCGCCGGAGATTTATGATCGCTATCTGCTTGGATTTCCATTTGACTGGGAGGAGCATGCAGCTGCTTTGTTGGGTCAAGGTTCTACTGGCAAAAGTGCATCAGCCAGAAATTCATCTCAGAAGTACATGTCTTTAGAACATAGTGAAAGTAATCAGTTACCATTTTCTATATCTGATGTCCCAGCGACAGCGACACGTGATTTTATAATGTCTTGTGTTGGAGATTCTGAACATTTGAAGACCATTTTGGATGATATACTGAGAACATTGGGGGACAATGTTTTTGGGGATACCACTCCACAAATCAACTCAAACATGGAAGATAGTGATCCAGTTGAAAAGGTGGAATCTGGATGCAATGAAACGCTAACCATGGCTAAGAAGGTTCACATTGACGGTGACAGAAACAAGAGTGCAAACATACATTCAAAAGGCAGCCAGAAATCTAAAAAAGGAATGTATTCTGGAAGAAACCTGACCGGCAAGATATCTGTACCGAGGAGATCAAGTGCCAGGCTAAAGAATAAAAATGAAATGCAAGACTCTTCTATGACTTTGGACTCAGAACTCGAAGTGATGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

287

Amino Acids

31.24

Weight (kDa)

6.66

Isoelectric Point (pI)

56.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 22 - 110 3e-24 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58210 AT5G02520 AT5G02520 AT5G02520
fragaria_vesca FvH4_4g11320 FvH4_4g11320
malus_domestica MD04G1038200.v1.1
prunus_persica Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1
pyrus_communis pycom04g03110
rosa_chinensis RchiOBHm_Chr4g0407561
rosa_laevigata RLG00000008710
rosa_multiflora Rmu_sc0004841.1_g000004
rosa_roxburghii Rroxscaffold_5G00352180
rosa_rugosa Rorug04G0080400
rosa_samantha Rh4AG145100 Rh4BG143000 Rh4CG151800 Rh4DG139100
rosa_wichuraiana Rw4G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 154
AciI CCGC 4 cut(s) 14, 17, 256, 278
AclWI GGATC 1 cut(s) 599
AcsI RAATTY 1 cut(s) 385
AcvI CACGTG 1 cut(s) 473
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 2 cut(s) 401, 771
AfiI CCNNNNNNNGG 1 cut(s) 61
AflIII ACRYGT 2 cut(s) 402, 470
AgsI TTSAA 6 cut(s) 9, 122, 180, 514, 614, 705
AhlI ACTAGT 1 cut(s) 260
AjnI CCWGG 1 cut(s) 788
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 2 cut(s) 165, 338
AluI AGCT 2 cut(s) 165, 338
Alw26I GTCTC 4 cut(s) 49, 136, 178, 200
AlwI GGATC 1 cut(s) 599
ApeKI GCWGC 4 cut(s) 170, 335, 338, 711
ApoI RAATTY 1 cut(s) 385
ArsI GACNNNNNNTTYG 2 cut(s) 542, 574
Asp700I GAANNNNTTC 1 cut(s) 736
AsuHPI GGTGA 1 cut(s) 686
BbrPI CACGTG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 521
BbvI GCAGC 4 cut(s) 182, 325, 347, 723
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 790
BciVI GTATCC 1 cut(s) 559
BcoDI GTCTC 4 cut(s) 49, 136, 178, 200
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 2 cut(s) 132, 261
BfuAI ACCTGC 1 cut(s) 154
BfuI GTATCC 1 cut(s) 559
BisI GCNGC 6 cut(s) 14, 17, 171, 336, 339, 712
BlsI GCNGC 6 cut(s) 15, 18, 172, 337, 340, 713
Bme1390I CCNGG 1 cut(s) 790
BmrFI CCNGG 1 cut(s) 790
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 3 cut(s) 383, 620, 843
BmuI ACTGGG 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 521
BpuEI CTTGAG 2 cut(s) 81, 224
BsaAI YACGTR 1 cut(s) 473
BsaBI GATNNNNATC 2 cut(s) 297, 603
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 111, 648, 773
BsaXI ACNNNNNCTCC 2 cut(s) 769, 799
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse118I RCCGGY 1 cut(s) 755
Bse1I ACTGG 3 cut(s) 326, 367, 608
Bse3DI GCAATG 1 cut(s) 640
Bse8I GATNNNNATC 2 cut(s) 297, 603
BseBI CCWGG 1 cut(s) 790
BseDI CCNNGG 3 cut(s) 111, 648, 773
BseGI GGATG 3 cut(s) 79, 532, 635
BseJI GATNNNNATC 2 cut(s) 297, 603
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 640
BseMII CTCAG 4 cut(s) 131, 407, 527, 852
BseNI ACTGG 3 cut(s) 326, 367, 608
BseRI GAGGAG 2 cut(s) 341, 790
BseXI GCAGC 4 cut(s) 182, 325, 347, 723
BseYI CCCAGC 1 cut(s) 457
BsiSI CCGG 2 cut(s) 281, 756
BslFI GGGAC 2 cut(s) 440, 563
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 4 cut(s) 49, 136, 178, 200
BsmBI CGTCTC 1 cut(s) 49
BsmFI GGGAC 2 cut(s) 440, 563
Bso31I GGTCTC 1 cut(s) 136
Bsp143I GATC 4 cut(s) 134, 292, 604, 779
Bsp19I CCATGG 1 cut(s) 648
BspACI CCGC 4 cut(s) 14, 17, 256, 278
BspCNI CTCAG 4 cut(s) 132, 406, 528, 851
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 640
BsrFI RCCGGY 1 cut(s) 755
BsrI ACTGG 3 cut(s) 326, 367, 608
BssAI RCCGGY 1 cut(s) 755
BssECI CCNNGG 3 cut(s) 111, 648, 773
BssMI GATC 4 cut(s) 134, 292, 604, 779
BssT1I CCWWGG 2 cut(s) 111, 648
Bst2UI CCWGG 1 cut(s) 790
Bst4CI ACNGT 2 cut(s) 43, 674
Bst6I CTCTTC 1 cut(s) 826
BstBAI YACGTR 1 cut(s) 473
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 5 cut(s) 140, 393, 536, 654, 838
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 3 cut(s) 79, 532, 635
BstKTI GATC 4 cut(s) 137, 295, 607, 782
BstMAI GTCTC 4 cut(s) 49, 136, 178, 200
BstMBI GATC 4 cut(s) 134, 292, 604, 779
BstNI CCWGG 1 cut(s) 790
BstNSI RCATGY 2 cut(s) 335, 406
BstSCI CCNGG 1 cut(s) 788
BstV1I GCAGC 4 cut(s) 182, 325, 347, 723
BstV2I GAAGAC 1 cut(s) 521
BstXI CCANNNNNNTGG 1 cut(s) 321
BsuI GTATCC 1 cut(s) 559
BtgI CCRYGG 1 cut(s) 648
BtsCI GGATG 3 cut(s) 79, 532, 635
BtsIMutI CAGTG 1 cut(s) 137
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 755
Csp6I GTAC 2 cut(s) 400, 770
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 4 cut(s) 332, 403, 592, 649
CviQI GTAC 2 cut(s) 400, 770
DdeI CTNAG 5 cut(s) 140, 393, 536, 654, 838
DpnI GATC 4 cut(s) 136, 294, 606, 781
DpnII GATC 4 cut(s) 134, 292, 604, 779
DraIII CACNNNGTG 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 826
EarI CTCTTC 1 cut(s) 826
EciI GGCGGA 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 111, 648
Eco31I GGTCTC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 765
Eco72I CACGTG 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 788
EcoRV GATATC 1 cut(s) 765
EcoT14I CCWWGG 2 cut(s) 111, 648
EcoT22I ATGCAT 1 cut(s) 858
ErhI CCWWGG 2 cut(s) 111, 648
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 4 cut(s) 335, 406, 595, 652
FaqI GGGAC 2 cut(s) 440, 563
FatI CATG 4 cut(s) 331, 402, 591, 648
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 6 cut(s) 14, 17, 171, 336, 339, 712
FokI GGATG 3 cut(s) 86, 539, 642
Fsp4HI GCNGC 6 cut(s) 14, 17, 171, 336, 339, 712
FspBI CTAG 2 cut(s) 132, 261
GluI GCNGC 6 cut(s) 14, 17, 171, 336, 339, 712
GsaI CCCAGC 1 cut(s) 461
HapII CCGG 2 cut(s) 281, 756
Hin1II CATG 4 cut(s) 335, 406, 595, 652
HinfI GANTC 4 cut(s) 500, 623, 818, 836
HpaII CCGG 2 cut(s) 281, 756
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 4 cut(s) 396, 451, 505, 841
Hpy188III TCNNGA 3 cut(s) 203, 627, 741
Hpy8I GTNNAC 1 cut(s) 664
HpyAV CCTTC 2 cut(s) 116, 652
HpyCH4III ACNGT 2 cut(s) 43, 674
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 7 cut(s) 149, 335, 374, 633, 692, 814, 856
HpyF3I CTNAG 5 cut(s) 140, 393, 536, 654, 838
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 4 cut(s) 335, 406, 595, 652
Kzo9I GATC 4 cut(s) 134, 292, 604, 779
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 4 cut(s) 182, 325, 347, 723
LweI GCATC 3 cut(s) 383, 620, 843
MaeI CTAG 2 cut(s) 132, 261
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 3 cut(s) 226, 432, 674
MalI GATC 4 cut(s) 136, 294, 606, 781
MboI GATC 4 cut(s) 134, 292, 604, 779
MboII GAAGA 4 cut(s) 526, 608, 756, 813
MluCI AATT 2 cut(s) 174, 385
MlyI GAGTC 2 cut(s) 812, 830
MmeI TCCRAC 2 cut(s) 51, 475
MnlI CCTC 4 cut(s) 61, 65, 319, 768
Mph1103I ATGCAT 1 cut(s) 858
MroXI GAANNNNTTC 1 cut(s) 736
MseI TTAA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 2 cut(s) 281, 756
MspR9I CCNGG 1 cut(s) 790
MvaI CCWGG 1 cut(s) 790
NcoI CCATGG 1 cut(s) 648
NdeII GATC 4 cut(s) 134, 292, 604, 779
NlaIII CATG 4 cut(s) 335, 406, 595, 652
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 674
NsiI ATGCAT 1 cut(s) 858
NspI RCATGY 2 cut(s) 335, 406
PaeI GCATGC 1 cut(s) 335
PciI ACATGT 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 736
PfeI GAWTC 2 cut(s) 500, 623
PkrI GCNGC 6 cut(s) 15, 18, 172, 337, 340, 713
PleI GAGTC 2 cut(s) 812, 830
PmaCI CACGTG 1 cut(s) 473
PmlI CACGTG 1 cut(s) 473
PpsI GAGTC 2 cut(s) 812, 830
Ppu21I YACGTR 1 cut(s) 473
PscI ACATGT 1 cut(s) 402
PsiI TTATAA 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 788
PspCI CACGTG 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 457
PspGI CCWGG 1 cut(s) 788
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 2 cut(s) 401, 771
RsaNI GTAC 2 cut(s) 400, 770
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 6 cut(s) 14, 17, 171, 336, 339, 712
Sau3AI GATC 4 cut(s) 134, 292, 604, 779
SchI GAGTC 2 cut(s) 812, 830
ScrFI CCNGG 1 cut(s) 790
SetI ASST 8 cut(s) 148, 167, 340, 358, 475, 621, 663, 753
SfaNI GCATC 3 cut(s) 383, 620, 843
SmlI CTYRAG 2 cut(s) 96, 203
SmoI CTYRAG 2 cut(s) 96, 203
SpeI ACTAGT 1 cut(s) 260
SphI GCATGC 1 cut(s) 335
Sse9I AATT 2 cut(s) 174, 385
SsiI CCGC 4 cut(s) 14, 17, 256, 278
SspMI CTAG 2 cut(s) 132, 261
StyD4I CCNGG 1 cut(s) 788
StyI CCWWGG 2 cut(s) 111, 648
TaaI ACNGT 2 cut(s) 43, 674
TaiI ACGT 1 cut(s) 475
TaqI TCGA 1 cut(s) 846
TasI AATT 2 cut(s) 174, 385
TatI WGTACW 1 cut(s) 399
TauI GCSGC 2 cut(s) 16, 19
TfiI GAWTC 2 cut(s) 500, 623
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 4 cut(s) 170, 335, 338, 711
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 3 cut(s) 378, 651, 822
TspRI CASTG 1 cut(s) 144
XapI RAATTY 1 cut(s) 385
XceI RCATGY 2 cut(s) 335, 406
XmnI GAANNNNTTC 1 cut(s) 736
XspI CTAG 2 cut(s) 132, 261
Zsp2I ATGCAT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.