RLG00000008710

SANTA (SANT Associated)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010074
Physical Location & Seq
Reverse (-)
35505854 .. 35508059
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008710

Sequence Viewer

Length: 867 bp
ATGGTGTCCACCAGAAGAACGTCGGCCTCTGCAACGCCGCCCCAGCCTTATTCAAATACCCGAATCCTCAAAACCCCATTCTCTACCCCCAAAACCATCTCTGCCTCCGTCAAATCGGTATTATTGGATGATTGGTGGCTGGTCAAGGCTCAAGGAAAGGGCTTGGCTGTGGAAGGCTTGGCTAAAACACAGAGACCAGCAATAAGAACTTTTAGCTCGGCAGCAATTTCAAAGAGACATACCGCCACAATTCTTGAGACAACAGATGGCATCATTGTTACACTCTGTGGTTTCTTAAATATCTCCCGCACAGGTCAAAATGGTTTTCCGCCTGAGGTATACAATCGCTATCTGCTTGGATTTCCATATGACTGGGAGGAGCATGCAGCTGGTTTATTGGTTCAAGGTTCTACTGACAAAAGTGCCTCAGCCAGAAATTCATCATCTCAGAAGTTCAACATGTTTTTAGAAGACAGTGAAAGCAATCCTTTACCATTTTCTATAGCTGATGTCCCAGCGACTGTTGCACGTGATTTTATAATTTCTTGTGTTGGAGACTCTGAACAATTGAAGACCATTTACAGTGATATACTGAGAACATCCGGGGACAATGTTTTTGGGGATACCACTCCGCAAATCAACTCAAACATGGAAGATAGTCATCCAGTTGAAAATGTGAAATCTGGACGAAATGAAACACCAACCATGGCTAAGAAGGTTCAGGTTGACGATGACATAAACAAGACTGCAGGCACATTTTTGAAAGGCAGCCAGAAATCTAAGAAGGGAATGTATTCCAGAAGAAACCAGACCAGCATGAAATCTGTACCCACAAGATCAAGCGCCAGGCTGAAGAATTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SANTA

Protein Analysis

289

Amino Acids

31.52

Weight (kDa)

9.57

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SANTA PF09133 40 - 127 6.5e-25 SANTA (SANT Associated)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58210 AT5G02520 AT5G02520 AT5G02520
fragaria_vesca FvH4_4g11320 FvH4_4g11320
malus_domestica MD04G1038200.v1.1
prunus_persica Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1 Prupe.1G188100_v2.0.a1
pyrus_communis pycom04g03110
rosa_chinensis RchiOBHm_Chr4g0407561
rosa_laevigata RLG00000008710
rosa_multiflora Rmu_sc0004841.1_g000004
rosa_roxburghii Rroxscaffold_5G00352180
rosa_rugosa Rorug04G0080400
rosa_samantha Rh4AG145100 Rh4BG143000 Rh4CG151800 Rh4DG139100
rosa_wichuraiana Rw4G011790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AccI GTMKAC 1 cut(s) 339
AciI CCGC 5 cut(s) 38, 243, 307, 329, 632
AcsI RAATTY 2 cut(s) 436, 856
AcvI CACGTG 1 cut(s) 530
AdeI CACNNNGTG 1 cut(s) 287
AfaI GTAC 1 cut(s) 828
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 8 cut(s) 54, 231, 404, 457, 571, 671, 763, 862
AjnI CCWGG 1 cut(s) 845
AluBI AGCT 3 cut(s) 216, 389, 506
AluI AGCT 3 cut(s) 216, 389, 506
Alw26I GTCTC 4 cut(s) 187, 229, 251, 549
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 221, 386, 768
ApoI RAATTY 2 cut(s) 436, 856
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
Asp700I GAANNNNTTC 1 cut(s) 793
AspLEI GCGC 1 cut(s) 845
AsuC2I CCSGG 1 cut(s) 604
AxyI CCTNAGG 1 cut(s) 333
BarI GAAGNNNNNNTAC 2 cut(s) 563, 595
BbrPI CACGTG 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 477, 578
BbvCI CCTCAGC 1 cut(s) 427
BbvI GCAGC 3 cut(s) 233, 398, 780
BccI CCATC 2 cut(s) 104, 260
BciT130I CCWGG 1 cut(s) 847
BciVI GTATCC 1 cut(s) 616
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 4 cut(s) 187, 229, 251, 549
BfmI CTRYAG 2 cut(s) 501, 747
BfoI RGCGCY 1 cut(s) 846
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 4 cut(s) 38, 222, 387, 769
BlsI GCNGC 4 cut(s) 39, 223, 388, 770
Bme1390I CCNGG 2 cut(s) 604, 847
BmrFI CCNGG 2 cut(s) 604, 847
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 2 cut(s) 477, 578
Bpu10I CCTNAGC 1 cut(s) 427
BpuEI CTTGAG 2 cut(s) 135, 275
BpuMI CCSGG 1 cut(s) 604
BsaAI YACGTR 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 660
BsaI GGTCTC 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 603, 705
Bse1I ACTGG 2 cut(s) 377, 665
Bse21I CCTNAGG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 1 cut(s) 847
BseDI CCNNGG 2 cut(s) 603, 705
BseGI GGATG 3 cut(s) 133, 599, 661
BseJI GATNNNNATC 1 cut(s) 660
BseMII CTCAG 4 cut(s) 324, 441, 461, 584
BseNI ACTGG 2 cut(s) 377, 665
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 233, 398, 780
BseYI CCCAGC 2 cut(s) 42, 514
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 603
BslFI GGGAC 2 cut(s) 497, 620
BsmAI GTCTC 4 cut(s) 187, 229, 251, 549
BsmFI GGGAC 2 cut(s) 497, 620
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 836
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 5 cut(s) 38, 243, 307, 329, 632
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 4 cut(s) 325, 440, 460, 585
BspMAI CTGCAG 1 cut(s) 751
BspTNI GGTCTC 1 cut(s) 187
BsrI ACTGG 2 cut(s) 377, 665
BssECI CCNNGG 2 cut(s) 603, 705
BssMI GATC 1 cut(s) 836
BssNAI GTATAC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 705
Bst1107I GTATAC 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 847
Bst4CI ACNGT 3 cut(s) 476, 523, 584
BstBAI YACGTR 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 384, 751
BstDEI CTNAG 6 cut(s) 333, 427, 447, 593, 711, 780
BstDSI CCRYGG 1 cut(s) 705
BstF5I GGATG 3 cut(s) 133, 599, 661
BstH2I RGCGCY 1 cut(s) 846
BstHHI GCGC 1 cut(s) 845
BstKTI GATC 1 cut(s) 839
BstMAI GTCTC 4 cut(s) 187, 229, 251, 549
BstMBI GATC 1 cut(s) 836
BstMWI GCNNNNNNNGC 2 cut(s) 43, 524
BstNI CCWGG 1 cut(s) 847
BstNSI RCATGY 2 cut(s) 386, 463
BstSCI CCNGG 2 cut(s) 602, 845
BstSFI CTRYAG 2 cut(s) 501, 747
BstV1I GCAGC 3 cut(s) 233, 398, 780
BstV2I GAAGAC 2 cut(s) 477, 578
BstXI CCANNNNNNTGG 1 cut(s) 372
BstZ17I GTATAC 1 cut(s) 340
Bsu36I CCTNAGG 1 cut(s) 333
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 705
BtsCI GGATG 3 cut(s) 133, 599, 661
BtsIMutI CAGTG 2 cut(s) 481, 589
Cac8I GCNNGC 2 cut(s) 384, 751
CaiI CAGNNNCTG 1 cut(s) 521
CfoI GCGC 1 cut(s) 845
Csp6I GTAC 1 cut(s) 827
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 5 cut(s) 383, 460, 649, 706, 817
CviQI GTAC 1 cut(s) 827
DdeI CTNAG 6 cut(s) 333, 427, 447, 593, 711, 780
DpnI GATC 1 cut(s) 838
DpnII GATC 1 cut(s) 836
DraIII CACNNNGTG 1 cut(s) 287
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 187
Eco72I CACGTG 1 cut(s) 530
Eco81I CCTNAGG 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 845
EcoT14I CCWWGG 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 5 cut(s) 386, 463, 652, 709, 820
FalI AAGNNNNNCTT 2 cut(s) 472, 504
FaqI GGGAC 2 cut(s) 497, 620
FatI CATG 5 cut(s) 382, 459, 648, 705, 816
FauI CCCGC 1 cut(s) 314
FauNDI CATATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 38, 222, 387, 769
FokI GGATG 3 cut(s) 140, 586, 648
Fsp4HI GCNGC 4 cut(s) 38, 222, 387, 769
GlaI GCGC 1 cut(s) 844
GluI GCNGC 4 cut(s) 38, 222, 387, 769
GsaI CCCAGC 2 cut(s) 46, 518
HaeII RGCGCY 1 cut(s) 846
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 603
HhaI GCGC 1 cut(s) 845
Hin1II CATG 5 cut(s) 386, 463, 652, 709, 820
Hin6I GCGC 1 cut(s) 843
HinP1I GCGC 1 cut(s) 843
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 2 cut(s) 63, 557
HpaII CCGG 1 cut(s) 603
Hpy166II GTNNAC 3 cut(s) 9, 340, 727
Hpy188I TCNGA 2 cut(s) 450, 562
Hpy188III TCNNGA 3 cut(s) 254, 684, 798
Hpy8I GTNNAC 3 cut(s) 9, 340, 727
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 3 cut(s) 167, 709, 778
HpyCH4III ACNGT 3 cut(s) 476, 523, 584
HpyCH4IV ACGT 2 cut(s) 20, 529
HpyCH4V TGCA 4 cut(s) 32, 386, 527, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 524
HpyF3I CTNAG 6 cut(s) 333, 427, 447, 593, 711, 780
HpySE526I ACGT 2 cut(s) 20, 529
Hsp92II CATG 5 cut(s) 386, 463, 652, 709, 820
HspAI GCGC 1 cut(s) 843
Kzo9I GATC 1 cut(s) 836
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 3 cut(s) 233, 398, 780
LweI GCATC 1 cut(s) 279
MaeII ACGT 2 cut(s) 20, 529
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 838
MboI GATC 1 cut(s) 836
MboII GAAGA 6 cut(s) 27, 482, 583, 665, 813, 865
MfeI CAATTG 1 cut(s) 566
MluCI AATT 6 cut(s) 225, 249, 436, 540, 566, 856
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 532
MnlI CCTC 6 cut(s) 37, 77, 115, 328, 370, 436
MroXI GAANNNNTTC 1 cut(s) 793
MseI TTAA 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 2 cut(s) 604, 847
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 847
MwoI GCNNNNNNNGC 2 cut(s) 43, 524
NciI CCSGG 1 cut(s) 604
NcoI CCATGG 1 cut(s) 705
NdeI CATATG 1 cut(s) 367
NdeII GATC 1 cut(s) 836
NlaIII CATG 5 cut(s) 386, 463, 652, 709, 820
NmeAIII GCCGAG 1 cut(s) 197
NspI RCATGY 2 cut(s) 386, 463
PaeI GCATGC 1 cut(s) 386
PciI ACATGT 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 793
PfeI GAWTC 1 cut(s) 63
PkrI GCNGC 4 cut(s) 39, 223, 388, 770
PleI GAGTC 1 cut(s) 551
PmaCI CACGTG 1 cut(s) 530
PmlI CACGTG 1 cut(s) 530
PpsI GAGTC 1 cut(s) 551
Ppu21I YACGTR 1 cut(s) 530
PscI ACATGT 1 cut(s) 459
PsiI TTATAA 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 845
PspCI CACGTG 1 cut(s) 530
PspFI CCCAGC 2 cut(s) 42, 514
PspGI CCWGG 1 cut(s) 845
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 828
RsaNI GTAC 1 cut(s) 827
SaqAI TTAA 1 cut(s) 296
SatI GCNGC 4 cut(s) 38, 222, 387, 769
Sau3AI GATC 1 cut(s) 836
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 2 cut(s) 604, 847
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 2 cut(s) 501, 747
SmlI CTYRAG 2 cut(s) 150, 254
SmoI CTYRAG 2 cut(s) 150, 254
SphI GCATGC 1 cut(s) 386
Sse9I AATT 6 cut(s) 225, 249, 436, 540, 566, 856
SsiI CCGC 5 cut(s) 38, 243, 307, 329, 632
StyD4I CCNGG 2 cut(s) 602, 845
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 3 cut(s) 476, 523, 584
TaiI ACGT 2 cut(s) 23, 532
TasI AATT 6 cut(s) 225, 249, 436, 540, 566, 856
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 2 cut(s) 481, 589
TseI GCWGC 3 cut(s) 221, 386, 768
TspDTI ATGAA 3 cut(s) 429, 708, 833
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 2 cut(s) 481, 589
XapI RAATTY 2 cut(s) 436, 856
XceI RCATGY 2 cut(s) 386, 463
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.