Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006786

Physical Location & Seq

Genomic Coordinates Forward (+)

22275484 .. 22279007

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGAAAACAATGCTCCGGTTCCGAAGCTTCTTCTACAATTAATCTCATCTGCTTTCCAAAGATGCCGTTTAGCAGAAGATCTCTGTAGATTATCAGTTCTTCTTGACCAATCCACCGAAAGAGATCCTCCGATTACTTGTATTTCGATTGCCGATACGGGAATTGGATGCAATTTGGAGGAATTTCAGAATTTGAGGTGCCCAAGAGAATTCAATGGAGCGAAGATTTGGGATGGGTTACTCTCCGTCAAAACGACTTGCTTTACTGACGATGAGGTATACTATTATCATATAAATCTGGATGAGTATATAGCGAACAAAAGACTGAAAAGACAACCTTCTCAGGCTAAGAATGGTGCAAAGTTTAGTGGGACTGAAGTATCCCTGAGTGTTTTTGGAAGTATGGATGTTCTCGTGGCACCGATAATTGGCTTCTTTCAAAAGATCATTGTTCTACAGATACTTAATGTCACATTGGATCTGATGGTTAAACAAGGGACTTCTCCTGGTAATCAAACTCAATACGTCTTTGCAGTGAACGCTGACAAAACTCCATGCTTTACTGCCTCCAATCTTGAACGGTTGAAGTCTGGTCTTGAGGACTATGTTTTAAGGCATGCTAACTGTTTGGATACGATGTGTGACTATTGCTTCTCTGATAGAGAGCATCTAAAAGTTGGAAGTGGAACAGTATGCCAGGAAGACAAACATAAGAGAGTTGGAGGGACGATGGAAGTGGTTATTGTGATAAGTGACTTGCTAGAGTCAACTCAGCATTGCAGCAGATCATGCAACGGCAAAACAGAGGTTCTATACTTTGACAATTTCTTACCTTCCCCTGTTCCACATTTGGCATTGAGCGCATTGAAAAAGATTGACTGGAAAAAATATGGTTTGATCCTGGCGAATGTGAATGATCAAGACGGACATGTGTTTCTCGAGTGGGACAATTTCCCTTCATATGTTCAAATACAAATCGCCCTCCATTGGTATCACAATCAATATCCAACAAGGCAGAAGAATGGGCCTGGTATAAGTCTTCTGAAGAAGGGAATAAAAAATGCTTTGGACAATTTGAAGGCTAAACATGAGGGTTTTCTTCTAAGCTCACATTCTCGTAAGATTTGCAGCTATGTCCCTGACCTTGCAAGATCAATAGCAGGCCTAATATTCTCCTCTACTGACTTAGACTTCCAAGGAGATTGCCTATCTGTTCTTGGATTTCAGACACAAGAAGTTGAGCGTGACACAGTCGAGAACTATATCCAGAGAAAGATCGTGACGGTTATAGGAATGAATGAGAGGAAACCCCAGAAAGACCAAGAAGCTGCTCCTTTTCTGTTTTTTGATGGCGAGTCTGAGACGTCGTTCTTTGAAGATGAGGAAGTAGAAGATCGAGAAAATTCCACGCATGAATATGATGCTACAGCAACTAAAGCTTATACACAGTTCAAATGTCTGGCGACTATGCTGCAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000793 GO:0003006 GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0007276 GO:0008094 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009561 GO:0009653 GO:0009790 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030674 GO:0032501 GO:0032502 GO:0032504 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048314 GO:0048598 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055046 GO:0060090 GO:0061505 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0140013 GO:0140097 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

493

Amino Acids

55.68

Weight (kDa)

5.42

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60460 AT1G60460 AT1G60460 AT1G60460 AT1G60460
fragaria_vesca	FvH4_4g34180 FvH4_4g34230 FvH4_4g34230 FvH4_4g34230
malus_domestica	MD16G1094900.v1.1
prunus_persica	Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1
pyrus_communis	pycom16g08070
rosa_chinensis	RchiOBHm_Chr4g0443681 RchiOBHm_Chr4g0443691 RchiOBHm_Chr7g0214331
rosa_laevigata	RLG00000005902
rosa_multiflora	Rmu_sc0001426.1_g000015 Rmu_sc0001426.1_g000016
rosa_roxburghii	Rroxscaffold_5G00384230
rosa_samantha	Rh4AG406200 Rh4BG417200 Rh4CG431700 Rh4DG412800
rosa_wichuraiana	Rw4G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1367
AccB1I	GGYRCC	2 cut(s)	198, 418
AccI	GTMKAC	1 cut(s)	279
AclWI	GGATC	3 cut(s)	119, 486, 892
AcsI	RAATTY	4 cut(s)	182, 190, 209, 1402
AcuI	CTGAAG	2 cut(s)	396, 1064
AcyI	GRCGYC	1 cut(s)	1364
AfiI	CCNNNNNNNGG	2 cut(s)	428, 987
AflIII	ACRYGT	1 cut(s)	928
AgsI	TTSAA	9 cut(s)	214, 440, 578, 586, 868, 968, 1078, 1376, 1453
AjnI	CCWGG	4 cut(s)	505, 696, 900, 1027
AluBI	AGCT	5 cut(s)	28, 1107, 1131, 1328, 1439
AluI	AGCT	5 cut(s)	28, 1107, 1131, 1328, 1439
Alw26I	GTCTC	1 cut(s)	1355
AlwI	GGATC	3 cut(s)	119, 486, 892
Ama87I	CYCGRG	1 cut(s)	938
AoxI	GGCC	2 cut(s)	1025, 1162
ApeKI	GCWGC	4 cut(s)	780, 1128, 1328, 1471
ApoI	RAATTY	4 cut(s)	182, 190, 209, 1402
AseI	ATTAAT	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	863
AspS9I	GGNCC	1 cut(s)	1025
AvaI	CYCGRG	1 cut(s)	938
BaeGI	GKGCMC	1 cut(s)	203
BaeI	ACNNNNGTAYC	2 cut(s)	363, 396
BanI	GGYRCC	2 cut(s)	198, 418
BauI	CACGAG	1 cut(s)	413
BbsI	GAAGAC	2 cut(s)	708, 1031
BbvI	GCAGC	4 cut(s)	792, 1140, 1315, 1458
BccI	CCATC	4 cut(s)	227, 478, 724, 1343
BceAI	ACGGC	2 cut(s)	51, 811
BcgI	CGANNNNNNTGC	1 cut(s)	1453
BciT130I	CCWGG	4 cut(s)	507, 698, 902, 1029
BciVI	GTATCC	2 cut(s)	391, 625
BclI	TGATCA	1 cut(s)	916
BcoDI	GTCTC	1 cut(s)	1355
BfaI	CTAG	1 cut(s)	761
BfmI	CTRYAG	4 cut(s)	85, 455, 1425, 1472
BfuI	GTATCC	2 cut(s)	391, 625
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	4 cut(s)	781, 1129, 1329, 1472
BlsI	GCNGC	4 cut(s)	782, 1130, 1330, 1473
Bme1390I	CCNGG	4 cut(s)	507, 698, 902, 1029
BmeT110I	CYCGRG	1 cut(s)	938
BmgT120I	GGNCC	1 cut(s)	1025
BmiI	GGNNCC	3 cut(s)	21, 200, 420
BmrFI	CCNGG	4 cut(s)	507, 698, 902, 1029
BmsI	GCATC	4 cut(s)	53, 158, 676, 1411
BpiI	GAAGAC	2 cut(s)	708, 1031
BpuEI	CTTGAG	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	1364
BsaJI	CCNNGG	1 cut(s)	1195
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 987
Bse1I	ACTGG	1 cut(s)	884
Bse3DI	GCAATG	1 cut(s)	775
BseBI	CCWGG	4 cut(s)	507, 698, 902, 1029
BseDI	CCNNGG	1 cut(s)	1195
BseGI	GGATG	4 cut(s)	173, 238, 307, 412
BseLI	CCNNNNNNNGG	2 cut(s)	428, 987
BseMI	GCAATG	1 cut(s)	775
BseMII	CTCAG	4 cut(s)	356, 377, 785, 1350
BseNI	ACTGG	1 cut(s)	884
BseRI	GAGGAG	1 cut(s)	1165
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	4 cut(s)	792, 1140, 1315, 1458
BshFI	GGCC	2 cut(s)	1027, 1164
BshNI	GGYRCC	2 cut(s)	198, 418
BsiHKCI	CYCGRG	1 cut(s)	938
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	5 cut(s)	385, 511, 739, 959, 1121
BslI	CCNNNNNNNGG	2 cut(s)	428, 987
BsmAI	GTCTC	1 cut(s)	1355
BsmBI	CGTCTC	1 cut(s)	1355
BsmFI	GGGAC	5 cut(s)	385, 511, 739, 959, 1121
BsnI	GGCC	2 cut(s)	1027, 1164
BsoBI	CYCGRG	1 cut(s)	938
Bsp1286I	GDGCHC	1 cut(s)	203
BspANI	GGCC	2 cut(s)	1027, 1164
BspCNI	CTCAG	4 cut(s)	355, 378, 784, 1351
BspLI	GGNNCC	3 cut(s)	21, 200, 420
BspMAI	CTGCAG	1 cut(s)	1476
BspPI	GGATC	3 cut(s)	119, 486, 892
BspT107I	GGYRCC	2 cut(s)	198, 418
BsrDI	GCAATG	1 cut(s)	775
BsrI	ACTGG	1 cut(s)	884
BssECI	CCNNGG	1 cut(s)	1195
BssNAI	GTATAC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	1364
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	1195
Bst1107I	GTATAC	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	4 cut(s)	507, 698, 902, 1029
Bst4CI	ACNGT	6 cut(s)	582, 626, 691, 1252, 1285, 1449
BstACI	GRCGYC	1 cut(s)	1364
BstAPI	GCANNNNNTGC	1 cut(s)	789
BstC8I	GCNNGC	2 cut(s)	618, 1162
BstDEI	CTNAG	7 cut(s)	342, 348, 386, 771, 1103, 1186, 1359
BstF5I	GGATG	4 cut(s)	173, 238, 307, 412
BstHHI	GCGC	1 cut(s)	863
BstMAI	GTCTC	1 cut(s)	1355
BstMWI	GCNNNNNNNGC	4 cut(s)	539, 789, 860, 1436
BstNI	CCWGG	4 cut(s)	507, 698, 902, 1029
BstNSI	RCATGY	2 cut(s)	620, 932
BstSCI	CCNGG	4 cut(s)	505, 696, 900, 1027
BstSFI	CTRYAG	4 cut(s)	85, 455, 1425, 1472
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	4 cut(s)	792, 1140, 1315, 1458
BstV2I	GAAGAC	2 cut(s)	708, 1031
BstX2I	RGATCY	3 cut(s)	79, 124, 478
BstYI	RGATCY	3 cut(s)	79, 124, 478
BstZ17I	GTATAC	1 cut(s)	280
BsuI	GTATCC	2 cut(s)	391, 625
BsuRI	GGCC	2 cut(s)	1027, 1164
BtsCI	GGATG	4 cut(s)	173, 238, 307, 412
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	618, 1162
CfoI	GCGC	1 cut(s)	863
Cfr13I	GGNCC	1 cut(s)	1025
CviAII	CATG	6 cut(s)	555, 617, 789, 929, 1088, 1412
DdeI	CTNAG	7 cut(s)	342, 348, 386, 771, 1103, 1186, 1359
Eco130I	CCWWGG	1 cut(s)	1195
Eco147I	AGGCCT	1 cut(s)	1164
Eco57I	CTGAAG	2 cut(s)	396, 1064
Eco88I	CYCGRG	1 cut(s)	938
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	4 cut(s)	505, 696, 900, 1027
EcoT14I	CCWWGG	1 cut(s)	1195
ErhI	CCWWGG	1 cut(s)	1195
Esp3I	CGTCTC	1 cut(s)	1355
FaeI	CATG	6 cut(s)	558, 620, 792, 932, 1091, 1415
FalI	AAGNNNNNCTT	2 cut(s)	322, 354
FaqI	GGGAC	5 cut(s)	385, 511, 739, 959, 1121
FatI	CATG	6 cut(s)	554, 616, 788, 928, 1087, 1411
FauNDI	CATATG	1 cut(s)	961
FbaI	TGATCA	1 cut(s)	916
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	781, 1129, 1329, 1472
FokI	GGATG	4 cut(s)	180, 245, 314, 419
Fsp4HI	GCNGC	4 cut(s)	781, 1129, 1329, 1472
FspBI	CTAG	1 cut(s)	761
GlaI	GCGC	1 cut(s)	862
GluI	GCNGC	4 cut(s)	781, 1129, 1329, 1472
HaeIII	GGCC	2 cut(s)	1027, 1164
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	1 cut(s)	863
Hin1I	GRCGYC	1 cut(s)	1364
Hin1II	CATG	6 cut(s)	558, 620, 792, 932, 1091, 1415
Hin6I	GCGC	1 cut(s)	861
HinP1I	GCGC	1 cut(s)	861
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HindIII	AAGCTT	2 cut(s)	26, 1437
HinfI	GANTC	2 cut(s)	764, 1355
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	280, 538, 768
Hpy188I	TCNGA	8 cut(s)	24, 132, 189, 483, 658, 1044, 1227, 1360
Hpy8I	GTNNAC	3 cut(s)	280, 538, 768
Hpy99I	CGWCG	1 cut(s)	1369
HpyAV	CCTTC	5 cut(s)	348, 843, 966, 1042, 1072
HpyCH4III	ACNGT	6 cut(s)	582, 626, 691, 1252, 1285, 1449
HpyCH4IV	ACGT	2 cut(s)	525, 1364
HpyCH4V	TGCA	8 cut(s)	171, 359, 533, 780, 792, 1128, 1148, 1474
HpyF10VI	GCNNNNNNNGC	4 cut(s)	539, 789, 860, 1436
HpyF3I	CTNAG	7 cut(s)	342, 348, 386, 771, 1103, 1186, 1359
HpySE526I	ACGT	2 cut(s)	525, 1364
Hsp92I	GRCGYC	1 cut(s)	1364
Hsp92II	CATG	6 cut(s)	558, 620, 792, 932, 1091, 1415
HspAI	GCGC	1 cut(s)	861
Ksp22I	TGATCA	1 cut(s)	916
LmnI	GCTCC	3 cut(s)	19, 218, 1336
Lsp1109I	GCAGC	4 cut(s)	792, 1140, 1315, 1458
LweI	GCATC	4 cut(s)	53, 158, 676, 1411
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	2 cut(s)	525, 1364
MaeIII	GTNAC	6 cut(s)	237, 469, 641, 752, 1244, 1279
MflI	RGATCY	3 cut(s)	79, 124, 478
MhlI	GDGCHC	1 cut(s)	203
MlyI	GAGTC	2 cut(s)	773, 1364
MmeI	TCCRAC	3 cut(s)	658, 700, 1031
MseI	TTAA	4 cut(s)	41, 465, 489, 611
MslI	CAYNNNNRTG	1 cut(s)	1416
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	4 cut(s)	507, 698, 902, 1029
MvaI	CCWGG	4 cut(s)	507, 698, 902, 1029
MwoI	GCNNNNNNNGC	4 cut(s)	539, 789, 860, 1436
NdeI	CATATG	1 cut(s)	961
NlaIII	CATG	6 cut(s)	558, 620, 792, 932, 1091, 1415
NlaIV	GGNNCC	3 cut(s)	21, 200, 420
NmuCI	GTSAC	5 cut(s)	469, 641, 752, 1244, 1279
NspI	RCATGY	2 cut(s)	620, 932
PaeI	GCATGC	1 cut(s)	620
PaeR7I	CTCGAG	1 cut(s)	938
PceI	AGGCCT	1 cut(s)	1164
PciI	ACATGT	1 cut(s)	928
PflFI	GACNNNGTC	1 cut(s)	1250
PkrI	GCNGC	4 cut(s)	782, 1130, 1330, 1473
PleI	GAGTC	2 cut(s)	772, 1363
PpsI	GAGTC	2 cut(s)	772, 1363
PscI	ACATGT	1 cut(s)	928
PshBI	ATTAAT	1 cut(s)	41
Psp6I	CCWGG	4 cut(s)	505, 696, 900, 1027
PspGI	CCWGG	4 cut(s)	505, 696, 900, 1027
PspN4I	GGNNCC	3 cut(s)	21, 200, 420
PspPI	GGNCC	1 cut(s)	1025
PstI	CTGCAG	1 cut(s)	1476
PsuI	RGATCY	3 cut(s)	79, 124, 478
PsyI	GACNNNGTC	1 cut(s)	1250
RseI	CAYNNNNRTG	1 cut(s)	1416
SaqAI	TTAA	4 cut(s)	41, 465, 489, 611
SatI	GCNGC	4 cut(s)	781, 1129, 1329, 1472
Sau96I	GGNCC	1 cut(s)	1025
SchI	GAGTC	2 cut(s)	773, 1364
ScrFI	CCNGG	4 cut(s)	507, 698, 902, 1029
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	4 cut(s)	53, 158, 676, 1411
SfcI	CTRYAG	4 cut(s)	85, 455, 1425, 1472
Sfr274I	CTCGAG	1 cut(s)	938
SlaI	CTCGAG	1 cut(s)	938
SmiMI	CAYNNNNRTG	1 cut(s)	1416
SmlI	CTYRAG	2 cut(s)	596, 938
SmoI	CTYRAG	2 cut(s)	596, 938
SphI	GCATGC	1 cut(s)	620
SseBI	AGGCCT	1 cut(s)	1164
SspI	AATATT	1 cut(s)	1170
SspMI	CTAG	1 cut(s)	761
StuI	AGGCCT	1 cut(s)	1164
StyD4I	CCNGG	4 cut(s)	505, 696, 900, 1027
StyI	CCWWGG	1 cut(s)	1195
TaaI	ACNGT	6 cut(s)	582, 626, 691, 1252, 1285, 1449
TaiI	ACGT	2 cut(s)	528, 1367
TaqI	TCGA	4 cut(s)	146, 939, 1254, 1396
Tru1I	TTAA	4 cut(s)	41, 465, 489, 611
Tru9I	TTAA	4 cut(s)	41, 465, 489, 611
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	5 cut(s)	469, 641, 752, 1244, 1279
TseI	GCWGC	4 cut(s)	780, 1128, 1328, 1471
Tsp45I	GTSAC	5 cut(s)	469, 641, 752, 1244, 1279
TspDTI	ATGAA	3 cut(s)	948, 1310, 1428
TspGWI	ACGGA	2 cut(s)	235, 939
TspRI	CASTG	1 cut(s)	540
Tth111I	GACNNNGTC	1 cut(s)	1250
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	4 cut(s)	182, 190, 209, 1402
XceI	RCATGY	2 cut(s)	620, 932
XhoI	CTCGAG	1 cut(s)	938
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	761
ZraI	GACGTC	1 cut(s)	1365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.