Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006786

Physical Location & Seq

Genomic Coordinates Forward (+)

5318246 .. 5321480

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08070.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTATCGCTACATTCACGCACGGAAACGGCGGGAGTTTCAGTCTTCTCTCCCAAAATCTGAACAAAGAAAGATGACCATCGCTTCAGCCCAAGACCTCTGCCTGCAAGTGAGTTTAAATCTTCACCTAAAAACCTACGAAACACTCGGATCGATTCGCTTTCTGTCGCCGTTAACTTCCGCAATTCGGTTTTTCTCGGATACCGGCGTGGGGAGCTGCGCAGAGGACTTTGGAGGTTTGAAGCTTCGTAGGGAGGCTTTTGGCGCGCAAATTTGGGGTATTGGTGATGATCAGATACATCATTACCAGTTCAATCTGAAAGAAAGTGCATCGGGGAGACGGTTGACCAGGCTGTCTTCAAATCCTAAGAATGGACTCCAATTCAGTTATGCACATAACTGCTTCGTGATTGTTTCATCGTTGTTCAGTGGGACTGAAGTATGTCTGTCAATATCCGAAAGCATTGATGTTTTGCTGGCAGCGTTTAGTTGCTTCTTTCGGAAGATCCTCATGTTAAAGATCCCTAATGTTTCAATTGAACTGGTAGTTGAACAAGGGGATGCTCCTGGATCTAGATACGTAAATGTTTTTCTATCGAATGAGGGGAGGAACCCTTTACCTTTTGCAGCTTCAAATCTTGAACGTTTAAAGTCAGGGGTTGAAGACTATGTTTTTAAGCACAGGAATACTTTAGGAAAAAAATGCGAGTCATGCTTCTCAAGTGGGGAGCATCTCAAGATTGGTAGTGGAACAGCATGCTGCACAGAAAGCCGAAGGTATCCTGGATCAGTGATGGAAGCAGTGATTGTAATTAGTGAAATGTCAGAGGTAGCCAGTACTTGTCCGAGGACATGTAGCTCGAAAACTGAGGTCTTGTATTTCAAAGATTTCACACCTTGCACAATCCCTCAATCCTCTCTGAAGGCGTTAACTAGCATTGACTGGAAAAGTTACGGATTGAGCTTTGGAAGCGTTGTGGATCAGGGCGGCTTTGCATTAGTGGAATGGGAGAACTTGCCCCCATCTGTTCAAATTGATATTGTCCTCCACCACTACCACGAGCAATATCCAAAATCGTTCATTGTCCGTAGCTATGCCCCCGATCTCGCGAGAATAATTTCTAGCCTAATCTTGTCTTCCAATGACGCGGACTTCCGAGAAGAATGCTGTTCTTTTCTTGGATTGCAGTCTCAAGGAGTTGGAGGTGAAGTCGTTGAAGATTGTATAAGGGAAAAGATCATTGCGGTAGTAGAAATGCATGACAGAGAGCCCCAGAGAAGCAAAGAAATGCCAACTTTTCTTTTCGAGGATGATCACATGCAGGAATTAGGGTCTCAAGACGGGGAATATGAAGGAGAGGGTGCATTTGGCTCTATGGATATATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000793 GO:0003006 GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0007276 GO:0008094 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009561 GO:0009653 GO:0009790 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030674 GO:0032501 GO:0032502 GO:0032504 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048314 GO:0048598 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055046 GO:0060090 GO:0061505 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0140013 GO:0140097 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

463

Amino Acids

51.55

Weight (kDa)

5.72

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60460 AT1G60460 AT1G60460 AT1G60460 AT1G60460
fragaria_vesca	FvH4_4g34180 FvH4_4g34230 FvH4_4g34230 FvH4_4g34230
malus_domestica	MD16G1094900.v1.1
prunus_persica	Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1
pyrus_communis	pycom16g08070
rosa_chinensis	RchiOBHm_Chr4g0443681 RchiOBHm_Chr4g0443691 RchiOBHm_Chr7g0214331
rosa_laevigata	RLG00000005902
rosa_multiflora	Rmu_sc0001426.1_g000015 Rmu_sc0001426.1_g000016
rosa_roxburghii	Rroxscaffold_5G00384230
rosa_samantha	Rh4AG406200 Rh4BG417200 Rh4CG431700 Rh4DG412800
rosa_wichuraiana	Rw4G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	352
Acc16I	TGCGCA	1 cut(s)	220
AccII	CGCG	3 cut(s)	266, 1109, 1148
AciI	CCGC	5 cut(s)	31, 180, 987, 1148, 1244
AclI	AACGTT	1 cut(s)	643
AclWI	GGATC	6 cut(s)	157, 499, 514, 577, 793, 987
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	3 cut(s)	69, 456, 941
AfaI	GTAC	1 cut(s)	838
AfiI	CCNNNNNNNGG	3 cut(s)	186, 210, 371
AflIII	ACRYGT	1 cut(s)	851
AjnI	CCWGG	3 cut(s)	347, 565, 781
AluBI	AGCT	6 cut(s)	216, 244, 629, 858, 963, 1092
AluI	AGCT	6 cut(s)	216, 244, 629, 858, 963, 1092
Alw26I	GTCTC	3 cut(s)	331, 1194, 1338
AlwI	GGATC	6 cut(s)	157, 499, 514, 577, 793, 987
ApeKI	GCWGC	4 cut(s)	216, 479, 626, 759
ApoI	RAATTY	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	1117
AspLEI	GCGC	3 cut(s)	221, 266, 268
AsuHPI	GGTGA	3 cut(s)	116, 296, 1217
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BanII	GRGCYC	1 cut(s)	1272
BauI	CACGAG	1 cut(s)	1058
BbsI	GAAGAC	4 cut(s)	36, 348, 669, 1128
BbvI	GCAGC	4 cut(s)	203, 491, 638, 746
BccI	CCATC	3 cut(s)	86, 787, 1030
BceAI	ACGGC	2 cut(s)	44, 154
BcgI	CGANNNNNNTGC	2 cut(s)	1146, 1180
BciT130I	CCWGG	3 cut(s)	349, 567, 783
BciVI	GTATCC	2 cut(s)	193, 789
BclI	TGATCA	2 cut(s)	289, 1312
BcoDI	GTCTC	3 cut(s)	331, 1194, 1338
BfaI	CTAG	3 cut(s)	573, 933, 1122
BfuI	GTATCC	2 cut(s)	193, 789
BisI	GCNGC	5 cut(s)	217, 480, 627, 760, 988
BlsI	GCNGC	5 cut(s)	218, 481, 628, 761, 989
BmcAI	AGTACT	1 cut(s)	838
Bme1390I	CCNGG	3 cut(s)	349, 567, 783
BmiI	GGNNCC	1 cut(s)	611
BmrFI	CCNGG	3 cut(s)	349, 567, 783
BmsI	GCATC	3 cut(s)	338, 550, 739
BpiI	GAAGAC	4 cut(s)	36, 348, 669, 1128
BpuEI	CTTGAG	4 cut(s)	703, 719, 1176, 1320
Bsa29I	ATCGAT	1 cut(s)	152
BsaAI	YACGTR	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	1338
BsaJI	CCNNGG	1 cut(s)	845
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 1194, 1224
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 210, 371
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	4 cut(s)	307, 546, 834, 947
Bse3DI	GCAATG	1 cut(s)	1239
Bse8I	GATNNNNATC	1 cut(s)	77
BseBI	CCWGG	3 cut(s)	349, 567, 783
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	845
BseGI	GGATG	2 cut(s)	565, 1315
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	3 cut(s)	186, 210, 371
BseMI	GCAATG	1 cut(s)	1239
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	4 cut(s)	307, 546, 834, 947
BsePI	GCGCGC	1 cut(s)	264
BseXI	GCAGC	4 cut(s)	203, 491, 638, 746
BsgI	GTGCAG	1 cut(s)	745
Bsh1236I	CGCG	3 cut(s)	266, 1109, 1148
BshVI	ATCGAT	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	186, 210, 371
BsmAI	GTCTC	3 cut(s)	331, 1194, 1338
BsmBI	CGTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	1 cut(s)	1169
Bso31I	GGTCTC	1 cut(s)	1338
Bsp1286I	GDGCHC	1 cut(s)	1272
Bsp68I	TCGCGA	1 cut(s)	1109
BspACI	CCGC	5 cut(s)	31, 180, 987, 1148, 1244
BspCNI	CTCAG	1 cut(s)	859
BspDI	ATCGAT	1 cut(s)	152
BspFNI	CGCG	3 cut(s)	266, 1109, 1148
BspLI	GGNNCC	1 cut(s)	611
BspPI	GGATC	6 cut(s)	157, 499, 514, 577, 793, 987
BspTNI	GGTCTC	1 cut(s)	1338
BsrDI	GCAATG	1 cut(s)	1239
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	4 cut(s)	307, 546, 834, 947
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	845
BssHII	GCGCGC	1 cut(s)	264
BssSI	CACGAG	1 cut(s)	1058
Bst2BI	CACGAG	1 cut(s)	1058
Bst2UI	CCWGG	3 cut(s)	349, 567, 783
Bst4CI	ACNGT	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	4 cut(s)	104, 266, 477, 757
BstDEI	CTNAG	2 cut(s)	366, 867
BstF5I	GGATG	2 cut(s)	565, 1315
BstFNI	CGCG	3 cut(s)	266, 1109, 1148
BstHHI	GCGC	3 cut(s)	221, 266, 268
BstMAI	GTCTC	3 cut(s)	331, 1194, 1338
BstMWI	GCNNNNNNNGC	5 cut(s)	213, 263, 711, 768, 969
BstNI	CCWGG	3 cut(s)	349, 567, 783
BstNSI	RCATGY	3 cut(s)	759, 855, 1321
BstSCI	CCNGG	3 cut(s)	347, 565, 781
BstSNI	TACGTA	1 cut(s)	580
BstUI	CGCG	3 cut(s)	266, 1109, 1148
BstV1I	GCAGC	4 cut(s)	203, 491, 638, 746
BstV2I	GAAGAC	4 cut(s)	36, 348, 669, 1128
BstX2I	RGATCY	3 cut(s)	504, 519, 569
BstYI	RGATCY	3 cut(s)	504, 519, 569
Bsu15I	ATCGAT	1 cut(s)	152
BsuI	GTATCC	2 cut(s)	193, 789
BsuTUI	ATCGAT	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	565, 1315
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	3 cut(s)	433, 795, 807
BtuMI	TCGCGA	1 cut(s)	1109
Cac8I	GCNNGC	4 cut(s)	104, 266, 477, 757
CfoI	GCGC	3 cut(s)	221, 266, 268
Cfr10I	RCCGGY	1 cut(s)	203
ClaI	ATCGAT	1 cut(s)	152
CseI	GACGC	1 cut(s)	1154
Csp6I	GTAC	1 cut(s)	837
CviAII	CATG	6 cut(s)	511, 711, 756, 852, 1259, 1318
CviQI	GTAC	1 cut(s)	837
DdeI	CTNAG	2 cut(s)	366, 867
DraI	TTTAAA	2 cut(s)	117, 648
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
Eco105I	TACGTA	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	1272
Eco31I	GGTCTC	1 cut(s)	1338
Eco57I	CTGAAG	3 cut(s)	69, 456, 941
EcoRII	CCWGG	3 cut(s)	347, 565, 781
EcoT22I	ATGCAT	1 cut(s)	1260
EcoT38I	GRGCYC	1 cut(s)	1272
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	6 cut(s)	514, 714, 759, 855, 1262, 1321
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	6 cut(s)	510, 710, 755, 851, 1258, 1317
FauI	CCCGC	1 cut(s)	24
FbaI	TGATCA	2 cut(s)	289, 1312
Fnu4HI	GCNGC	5 cut(s)	217, 480, 627, 760, 988
FokI	GGATG	2 cut(s)	572, 1322
FriOI	GRGCYC	1 cut(s)	1272
Fsp4HI	GCNGC	5 cut(s)	217, 480, 627, 760, 988
FspBI	CTAG	3 cut(s)	573, 933, 1122
FspI	TGCGCA	1 cut(s)	220
GlaI	GCGC	3 cut(s)	220, 265, 267
GluI	GCNGC	5 cut(s)	217, 480, 627, 760, 988
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	1154
HhaI	GCGC	3 cut(s)	221, 266, 268
Hin1II	CATG	6 cut(s)	514, 714, 759, 855, 1262, 1321
Hin6I	GCGC	3 cut(s)	219, 264, 266
HinP1I	GCGC	3 cut(s)	219, 264, 266
HincII	GTYRAC	3 cut(s)	174, 345, 930
HindII	GTYRAC	3 cut(s)	174, 345, 930
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	3 cut(s)	154, 375, 707
HpaI	GTTAAC	2 cut(s)	174, 930
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	3 cut(s)	116, 296, 1217
Hpy166II	GTNNAC	3 cut(s)	174, 345, 930
Hpy188III	TCNNGA	6 cut(s)	406, 573, 638, 736, 1108, 1337
Hpy8I	GTNNAC	3 cut(s)	174, 345, 930
HpyAV	CCTTC	3 cut(s)	768, 916, 1346
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	2 cut(s)	579, 643
HpyF10VI	GCNNNNNNNGC	5 cut(s)	213, 263, 711, 768, 969
HpyF3I	CTNAG	2 cut(s)	366, 867
HpySE526I	ACGT	2 cut(s)	579, 643
Hsp92II	CATG	6 cut(s)	514, 714, 759, 855, 1262, 1321
HspAI	GCGC	3 cut(s)	219, 264, 266
Ksp22I	TGATCA	2 cut(s)	289, 1312
KspAI	GTTAAC	2 cut(s)	174, 930
LmnI	GCTCC	3 cut(s)	213, 568, 727
Lsp1109I	GCAGC	4 cut(s)	203, 491, 638, 746
LweI	GCATC	3 cut(s)	338, 550, 739
MaeI	CTAG	3 cut(s)	573, 933, 1122
MaeII	ACGT	2 cut(s)	579, 643
MaeIII	GTNAC	1 cut(s)	950
MboII	GAAGA	8 cut(s)	36, 113, 348, 514, 674, 1128, 1172, 1229
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	3 cut(s)	504, 519, 569
MhlI	GDGCHC	1 cut(s)	1272
MluCI	AATT	8 cut(s)	183, 270, 380, 534, 810, 1032, 1116, 1325
MlyI	GAGTC	2 cut(s)	369, 716
MmeI	TCCRAC	1 cut(s)	1180
Mph1103I	ATGCAT	1 cut(s)	1260
MroXI	GAANNNNTTC	1 cut(s)	1117
MseI	TTAA	7 cut(s)	116, 173, 515, 647, 675, 929, 1387
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	3 cut(s)	349, 567, 783
MunI	CAATTG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	1169
MvaI	CCWGG	3 cut(s)	349, 567, 783
MvnI	CGCG	3 cut(s)	266, 1109, 1148
MwoI	GCNNNNNNNGC	5 cut(s)	213, 263, 711, 768, 969
NlaIII	CATG	6 cut(s)	514, 714, 759, 855, 1262, 1321
NlaIV	GGNNCC	1 cut(s)	611
NruI	TCGCGA	1 cut(s)	1109
NsbI	TGCGCA	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	1260
NspI	RCATGY	3 cut(s)	759, 855, 1321
PaeI	GCATGC	1 cut(s)	759
PauI	GCGCGC	1 cut(s)	264
PciI	ACATGT	1 cut(s)	851
PctI	GAATGC	1 cut(s)	1169
PdmI	GAANNNNTTC	1 cut(s)	1117
PfeI	GAWTC	1 cut(s)	154
PfoI	TCCNGGA	2 cut(s)	565, 781
PkrI	GCNGC	5 cut(s)	218, 481, 628, 761, 989
PleI	GAGTC	2 cut(s)	369, 715
PpsI	GAGTC	2 cut(s)	369, 715
Ppu21I	YACGTR	1 cut(s)	580
PscI	ACATGT	1 cut(s)	851
Psp1406I	AACGTT	1 cut(s)	643
Psp6I	CCWGG	3 cut(s)	347, 565, 781
PspGI	CCWGG	3 cut(s)	347, 565, 781
PspN4I	GGNNCC	1 cut(s)	611
PsuI	RGATCY	3 cut(s)	504, 519, 569
PteI	GCGCGC	1 cut(s)	264
RruI	TCGCGA	1 cut(s)	1109
RsaI	GTAC	1 cut(s)	838
RsaNI	GTAC	1 cut(s)	837
SaqAI	TTAA	7 cut(s)	116, 173, 515, 647, 675, 929, 1387
SatI	GCNGC	5 cut(s)	217, 480, 627, 760, 988
ScaI	AGTACT	1 cut(s)	838
SchI	GAGTC	2 cut(s)	369, 716
ScrFI	CCNGG	3 cut(s)	349, 567, 783
SduI	GDGCHC	1 cut(s)	1272
SfaNI	GCATC	3 cut(s)	338, 550, 739
SmlI	CTYRAG	4 cut(s)	718, 734, 1191, 1335
SmoI	CTYRAG	4 cut(s)	718, 734, 1191, 1335
SnaBI	TACGTA	1 cut(s)	580
SphI	GCATGC	1 cut(s)	759
Sse9I	AATT	8 cut(s)	183, 270, 380, 534, 810, 1032, 1116, 1325
SsiI	CCGC	5 cut(s)	31, 180, 987, 1148, 1244
SspMI	CTAG	3 cut(s)	573, 933, 1122
StyD4I	CCNGG	3 cut(s)	347, 565, 781
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	2 cut(s)	582, 646
TaqI	TCGA	4 cut(s)	152, 596, 860, 1305
TasI	AATT	8 cut(s)	183, 270, 380, 534, 810, 1032, 1116, 1325
TatI	WGTACW	1 cut(s)	836
TauI	GCSGC	1 cut(s)	990
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	7 cut(s)	116, 173, 515, 647, 675, 929, 1387
Tru9I	TTAA	7 cut(s)	116, 173, 515, 647, 675, 929, 1387
TscAI	CASTG	3 cut(s)	433, 795, 807
TseI	GCWGC	4 cut(s)	216, 479, 626, 759
TspDTI	ATGAA	3 cut(s)	405, 1069, 1365
TspGWI	ACGGA	3 cut(s)	37, 969, 1076
TspRI	CASTG	3 cut(s)	433, 795, 807
XapI	RAATTY	1 cut(s)	270
XbaI	TCTAGA	1 cut(s)	572
XceI	RCATGY	3 cut(s)	759, 855, 1321
XmnI	GAANNNNTTC	1 cut(s)	1117
XspI	CTAG	3 cut(s)	573, 933, 1122
ZrmI	AGTACT	1 cut(s)	838
Zsp2I	ATGCAT	1 cut(s)	1260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.