Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006786

Physical Location & Seq

Genomic Coordinates Reverse (-)

32127722 .. 32130968

Gene Structure 3247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAACATCGCTTCCGTCCCGGAGCTCTGTCTACAGCTGATTTCTTCTGCATTTCAACGATGCCGTGCCTCCGACGACCTCTGCAGACTCTCGGTCACTCTCCGGCGATCTCCTCTTTCCAATCTCGTCCGAGTTTCAGTCTCGGATACTGGCGTTGGAAGCTGCGTGGAGGAGTTTGAAGCTCTGAAGATTTCCAGGGAGGCTCTCGGCGCCGGGATTTGGGATGGAATGCTTTCCGTCACAACCACCGGTATTGGTGATAATGTGATACATCACTATGAGATGAATCTACAAGAAGCCGTGTCTGAGAGGAGGATGACTTGGCTGCCTTCGAATCCGAAGAATGGGCAGAAATTCAGTGGGACTGAAGTGTGTCTGTCGATTTTCGAGAGCATTGATGATTTGCTGGGAGAGGTTACTCGCTTCTTCCAAAAGATCCTCATTCTAAAGATCCCTAATGTTTTAATTCAGCTGGTGGCTGAGCATGGGGATGTTTCTGGATCACAATATGAAAATGTGTTCCTGGCAAATGAATGGAGAGCTTTACCTTTCTCGGCCTCAAATCTTGAACGAATAAAGTCAGGTCTTGAGGACTATGTTTTTAAGCATGGAAATACATTACAAAAGAAATGTGAGTCGTGCTTCTCAAATTGGGATCATCTGAAGGTTGGGACTGGAGTAGCATGCCACACAGAAAGCCGTAGATATTCAGAATCAACTATGGAAGCTGTGATTGTAATAAGTGAAATATCAGATCTAGCAAGTTCTTGCATGAGGACATGTGGCTCAAAAACTGAGGTTTTGTGTTTCAAAGATTTCTCACCTTGTCCAGTCTCCCAATCATCTGTGAAGGCATTAGAAAGCATTGACTGGAAAAGTTATGGATTGAATTTTGGGGGAGTTGTGGAGCAGGGTGGCTATGCATTACTGAAATGGGAGAACTTGCCACCAAATGTTCAAATTGACATTTCCCTTCACCATTACCGTAACCAATATCCAAAACTATGTTGGATGTTCAATATTTTGAACTGGTTAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000793 GO:0003006 GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0007276 GO:0008094 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009561 GO:0009653 GO:0009790 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030674 GO:0032501 GO:0032502 GO:0032504 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048314 GO:0048598 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055046 GO:0060090 GO:0061505 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0140013 GO:0140097 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

38.71

Weight (kDa)

5.68

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60460 AT1G60460 AT1G60460 AT1G60460 AT1G60460
fragaria_vesca	FvH4_4g34180 FvH4_4g34230 FvH4_4g34230 FvH4_4g34230
malus_domestica	MD16G1094900.v1.1
prunus_persica	Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1
pyrus_communis	pycom16g08070
rosa_chinensis	RchiOBHm_Chr4g0443681 RchiOBHm_Chr4g0443691 RchiOBHm_Chr7g0214331
rosa_laevigata	RLG00000005902
rosa_multiflora	Rmu_sc0001426.1_g000015 Rmu_sc0001426.1_g000016
rosa_roxburghii	Rroxscaffold_5G00384230
rosa_samantha	Rh4AG406200 Rh4BG417200 Rh4CG431700 Rh4DG412800
rosa_wichuraiana	Rw4G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	31
AclWI	GGATC	4 cut(s)	430, 445, 508, 663
AcsI	RAATTY	2 cut(s)	353, 889
AcuI	CTGAAG	3 cut(s)	206, 387, 683
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	219, 344
AflIII	ACRYGT	1 cut(s)	779
AgeI	ACCGGT	1 cut(s)	248
AgsI	TTSAA	8 cut(s)	56, 179, 569, 811, 889, 959, 1018, 1027
AhdI	GACNNNNNGTC	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	194, 522
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	7 cut(s)	25, 37, 162, 182, 472, 542, 728
AluI	AGCT	7 cut(s)	25, 37, 162, 182, 472, 542, 728
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	2 cut(s)	145, 838
AlwI	GGATC	4 cut(s)	430, 445, 508, 663
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	2 cut(s)	162, 325
ApoI	RAATTY	2 cut(s)	353, 889
AsiGI	ACCGGT	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	212
AsuC2I	CCSGG	2 cut(s)	20, 214
AsuHPI	GGTGA	3 cut(s)	269, 813, 968
AsuII	TTCGAA	1 cut(s)	332
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	149, 312
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	3 cut(s)	48, 284, 684
BciT130I	CCWGG	2 cut(s)	196, 524
BciVI	GTATCC	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	20, 214
BcoDI	GTCTC	2 cut(s)	145, 838
BfaI	CTAG	1 cut(s)	758
BfmI	CTRYAG	2 cut(s)	32, 82
BfoI	RGCGCY	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	139
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	2 cut(s)	163, 326
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	2 cut(s)	164, 327
Bme1390I	CCNGG	4 cut(s)	20, 196, 214, 524
BmeRI	GACNNNNNGTC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	4 cut(s)	20, 196, 214, 524
BmsI	GCATC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	696
Bpu1102I	GCTNAGC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	2 cut(s)	20, 214
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 344
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	5 cut(s)	154, 679, 830, 875, 1034
BseBI	CCWGG	2 cut(s)	196, 524
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	4 cut(s)	229, 321, 496, 1017
BseLI	CCNNNNNNNGG	2 cut(s)	219, 344
BseMII	CTCAG	3 cut(s)	297, 471, 786
BseNI	ACTGG	5 cut(s)	154, 679, 830, 875, 1034
BseRI	GAGGAG	3 cut(s)	102, 185, 325
BseXI	GCAGC	2 cut(s)	149, 312
BseYI	CCCAGC	1 cut(s)	406
BshFI	GGCC	1 cut(s)	557
BshNI	GGYRCC	1 cut(s)	209
BshTI	ACCGGT	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	4 cut(s)	20, 103, 213, 249
BslFI	GGGAC	3 cut(s)	2, 376, 685
BslI	CCNNNNNNNGG	2 cut(s)	219, 344
BsmAI	GTCTC	2 cut(s)	145, 838
BsmFI	GGGAC	3 cut(s)	2, 376, 685
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	557
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	6 cut(s)	107, 435, 450, 500, 655, 754
Bsp1720I	GCTNAGC	1 cut(s)	480
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	3 cut(s)	298, 472, 787
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	4 cut(s)	430, 445, 508, 663
BspT104I	TTCGAA	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	5 cut(s)	154, 679, 830, 875, 1034
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	6 cut(s)	107, 435, 450, 500, 655, 754
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	196, 524
Bst4CI	ACNGT	1 cut(s)	986
BstACI	GRCGYC	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	685
BstDEI	CTNAG	4 cut(s)	306, 480, 795, 1038
BstF5I	GGATG	4 cut(s)	229, 321, 496, 1017
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	6 cut(s)	110, 438, 453, 503, 658, 757
BstMAI	GTCTC	2 cut(s)	145, 838
BstMBI	GATC	6 cut(s)	107, 435, 450, 500, 655, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 209
BstNI	CCWGG	2 cut(s)	196, 524
BstNSI	RCATGY	2 cut(s)	687, 783
BstSCI	CCNGG	4 cut(s)	18, 194, 212, 522
BstSFI	CTRYAG	2 cut(s)	32, 82
BstV1I	GCAGC	2 cut(s)	149, 312
BstX2I	RGATCY	3 cut(s)	435, 450, 754
BstYI	RGATCY	3 cut(s)	435, 450, 754
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	557
BtsCI	GGATG	4 cut(s)	229, 321, 496, 1017
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	685
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	248
CspAI	ACCGGT	1 cut(s)	248
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	5 cut(s)	485, 608, 684, 772, 780
DdeI	CTNAG	4 cut(s)	306, 480, 795, 1038
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	6 cut(s)	109, 437, 452, 502, 657, 756
DpnII	GATC	6 cut(s)	107, 435, 450, 500, 655, 754
DriI	GACNNNNNGTC	1 cut(s)	92
Eam1105I	GACNNNNNGTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	3 cut(s)	206, 387, 683
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	194, 522
EcoT22I	ATGCAT	1 cut(s)	925
EcoT38I	GRGCYC	1 cut(s)	27
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
FaeI	CATG	5 cut(s)	488, 611, 687, 775, 783
FaqI	GGGAC	3 cut(s)	2, 376, 685
FatI	CATG	5 cut(s)	484, 607, 683, 771, 779
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	163, 326
FokI	GGATG	4 cut(s)	236, 328, 503, 1024
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	163, 326
FspBI	CTAG	1 cut(s)	758
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	2 cut(s)	163, 326
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	696
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	557
HapII	CCGG	4 cut(s)	20, 103, 213, 249
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	488, 611, 687, 775, 783
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	1035
HindII	GTYRAC	1 cut(s)	1035
HinfI	GANTC	5 cut(s)	87, 286, 334, 635, 713
HpaI	GTTAAC	1 cut(s)	1035
HpaII	CCGG	4 cut(s)	20, 103, 213, 249
HphI	GGTGA	3 cut(s)	269, 813, 968
Hpy166II	GTNNAC	2 cut(s)	32, 1035
Hpy188I	TCNGA	9 cut(s)	73, 131, 145, 186, 307, 339, 663, 712, 754
Hpy188III	TCNNGA	4 cut(s)	388, 498, 566, 587
Hpy8I	GTNNAC	2 cut(s)	32, 1035
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	4 cut(s)	339, 658, 844, 983
HpyCH4III	ACNGT	1 cut(s)	986
HpyCH4V	TGCA	4 cut(s)	50, 84, 771, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 209
HpyF3I	CTNAG	4 cut(s)	306, 480, 795, 1038
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	488, 611, 687, 775, 783
HspAI	GCGC	1 cut(s)	210
KasI	GGCGCC	1 cut(s)	209
KspAI	GTTAAC	1 cut(s)	1035
Kzo9I	GATC	6 cut(s)	107, 435, 450, 500, 655, 754
LmnI	GCTCC	2 cut(s)	22, 907
Lsp1109I	GCAGC	2 cut(s)	149, 312
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	758
MaeIII	GTNAC	4 cut(s)	94, 238, 415, 986
MalI	GATC	6 cut(s)	109, 437, 452, 502, 657, 756
MboI	GATC	6 cut(s)	107, 435, 450, 500, 655, 754
MboII	GAAGA	4 cut(s)	36, 199, 352, 418
MflI	RGATCY	3 cut(s)	435, 450, 754
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	5 cut(s)	353, 465, 649, 889, 960
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	81, 644
MmeI	TCCRAC	3 cut(s)	96, 136, 989
Mph1103I	ATGCAT	1 cut(s)	925
MroXI	GAANNNNTTC	1 cut(s)	232
MseI	TTAA	3 cut(s)	464, 603, 1034
MslI	CAYNNNNRTG	2 cut(s)	276, 489
MspA1I	CMGCKG	2 cut(s)	37, 472
MspI	CCGG	4 cut(s)	20, 103, 213, 249
MspR9I	CCNGG	4 cut(s)	20, 196, 214, 524
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	2 cut(s)	196, 524
MwoI	GCNNNNNNNGC	2 cut(s)	159, 209
NarI	GGCGCC	1 cut(s)	210
NciI	CCSGG	2 cut(s)	20, 214
NdeII	GATC	6 cut(s)	107, 435, 450, 500, 655, 754
NlaIII	CATG	5 cut(s)	488, 611, 687, 775, 783
NlaIV	GGNNCC	1 cut(s)	211
NmeAIII	GCCGAG	2 cut(s)	186, 533
NmuCI	GTSAC	2 cut(s)	94, 238
NsiI	ATGCAT	1 cut(s)	925
NspI	RCATGY	2 cut(s)	687, 783
NspV	TTCGAA	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	687
PciI	ACATGT	1 cut(s)	779
PctI	GAATGC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	3 cut(s)	286, 334, 713
PfoI	TCCNGGA	1 cut(s)	18
PinAI	ACCGGT	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	164, 327
PleI	GAGTC	2 cut(s)	81, 643
PluTI	GGCGCC	1 cut(s)	213
PpsI	GAGTC	2 cut(s)	81, 643
PscI	ACATGT	1 cut(s)	779
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	194, 522
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	2 cut(s)	194, 522
PspN4I	GGNNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	86
PsuI	RGATCY	3 cut(s)	435, 450, 754
PvuII	CAGCTG	2 cut(s)	37, 472
RseI	CAYNNNNRTG	2 cut(s)	276, 489
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	464, 603, 1034
SatI	GCNGC	2 cut(s)	163, 326
Sau3AI	GATC	6 cut(s)	107, 435, 450, 500, 655, 754
SchI	GAGTC	2 cut(s)	81, 644
ScrFI	CCNGG	4 cut(s)	20, 196, 214, 524
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	2 cut(s)	32, 82
SfoI	GGCGCC	1 cut(s)	211
SfuI	TTCGAA	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	276, 489
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SphI	GCATGC	1 cut(s)	687
Sse9I	AATT	5 cut(s)	353, 465, 649, 889, 960
SspDI	GGCGCC	1 cut(s)	209
SspI	AATATT	1 cut(s)	1021
SspMI	CTAG	1 cut(s)	758
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	4 cut(s)	18, 194, 212, 522
TaaI	ACNGT	1 cut(s)	986
TaqI	TCGA	3 cut(s)	332, 380, 387
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	5 cut(s)	353, 465, 649, 889, 960
TfiI	GAWTC	3 cut(s)	286, 334, 713
Tru1I	TTAA	3 cut(s)	464, 603, 1034
Tru9I	TTAA	3 cut(s)	464, 603, 1034
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	2 cut(s)	94, 238
TseI	GCWGC	2 cut(s)	162, 325
Tsp45I	GTSAC	2 cut(s)	94, 238
TspDTI	ATGAA	4 cut(s)	17, 299, 525, 546
TspGWI	ACGGA	2 cut(s)	4, 226
TspRI	CASTG	1 cut(s)	364
XapI	RAATTY	2 cut(s)	353, 889
XceI	RCATGY	2 cut(s)	687, 783
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1005
XmiI	GTMKAC	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	232
XspI	CTAG	1 cut(s)	758
Zsp2I	ATGCAT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.