Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001426.1

Orthogroup ID

OG0006786

Physical Location & Seq

Genomic Coordinates Forward (+)

45580 .. 47265

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001426.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgccgcgcttccgacgacctctgccgactctccgtagtgctccggcgatctccgccttccaatctcgttcgaatttcaggtttctcttatgcttctcttttcatttactcgagattttcggttccgattttctcgaaacgaaacgacgtagttttggcctttttgcagtttcggatactggtgttggaagctgcgtgggggagtttgaagctttgaagctttgcagggaggcttttggcggtgagatttgggatggattgctttccgtcacaaccaccggttttggtgataatgagatatatcactatgagttcaatctaaaagaggctgtgtctgccagaaggttgaccaggctgccttcgaatcctaagaatgggcagaaattcaggtacgaaaatcggctcaccactgtgctgaatgttgcaattcagctggtggctgagcatggggatgttcctggatcacgatatgaaagtgtttttctggcaaatgaatggaatcctttacctttctcagcttcaaatcttgaacgtttaaagtcaggccttgaagactatgtttttaagcatggaaatacattaggacaaaaatgcgagtcatgcttctcaaattgggagcatctcaaggttgggactggagtagcatgccacacagaaagccgtagatattgtgaatcagttatggaagctgtgattgtaataagtgaaatatcagagatagcgagtactcgcctgaggacatgtggcgctaaaacagaggttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000793 GO:0003006 GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0007276 GO:0008094 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009561 GO:0009653 GO:0009790 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030674 GO:0032501 GO:0032502 GO:0032504 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048314 GO:0048598 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055046 GO:0060090 GO:0061505 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0140013 GO:0140097 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.66

Weight (kDa)

7.59

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60460 AT1G60460 AT1G60460 AT1G60460 AT1G60460
fragaria_vesca	FvH4_4g34180 FvH4_4g34230 FvH4_4g34230 FvH4_4g34230
malus_domestica	MD16G1094900.v1.1
prunus_persica	Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1
pyrus_communis	pycom16g08070
rosa_chinensis	RchiOBHm_Chr4g0443681 RchiOBHm_Chr4g0443691 RchiOBHm_Chr7g0214331
rosa_laevigata	RLG00000005902
rosa_multiflora	Rmu_sc0001426.1_g000015 Rmu_sc0001426.1_g000016
rosa_roxburghii	Rroxscaffold_5G00384230
rosa_samantha	Rh4AG406200 Rh4BG417200 Rh4CG431700 Rh4DG412800
rosa_wichuraiana	Rw4G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	5, 54, 240
AclI	AACGTT	1 cut(s)	532
AclWI	GGATC	1 cut(s)	469
AcsI	RAATTY	2 cut(s)	73, 383
AfaI	GTAC	2 cut(s)	392, 727
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	740
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	6 cut(s)	209, 217, 316, 522, 530, 551
AjnI	CCWGG	2 cut(s)	350, 457
AleI	CACNNNNGTG	1 cut(s)	410
AluBI	AGCT	6 cut(s)	192, 212, 220, 433, 518, 689
AluI	AGCT	6 cut(s)	192, 212, 220, 433, 518, 689
Alw21I	GWGCWC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	469
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	157, 544
ApeKI	GCWGC	2 cut(s)	192, 355
ApoI	RAATTY	2 cut(s)	73, 383
AsiGI	ACCGGT	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	9, 749
AsuHPI	GGTGA	3 cut(s)	254, 299, 397
AsuII	TTCGAA	2 cut(s)	71, 362
AvaI	CYCGRG	1 cut(s)	110
AxyI	CCTNAGG	1 cut(s)	734
BaeI	ACNNNNGTAYC	2 cut(s)	168, 201
BbsI	GAAGAC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	179, 342
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	645
BciT130I	CCWGG	2 cut(s)	352, 459
BciVI	GTATCC	1 cut(s)	169
BfoI	RGCGCY	1 cut(s)	750
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	3 cut(s)	5, 193, 356
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	3 cut(s)	6, 194, 357
BmcAI	AGTACT	1 cut(s)	727
Bme1390I	CCNGG	2 cut(s)	352, 459
BmeT110I	CYCGRG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	352, 459
BmsI	GCATC	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	657
Bpu1102I	GCTNAGC	1 cut(s)	441
Bpu14I	TTCGAA	2 cut(s)	71, 362
BpuEI	CTTGAG	1 cut(s)	608
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	184, 640
Bse21I	CCTNAGG	1 cut(s)	734
BseBI	CCWGG	2 cut(s)	352, 459
BseGI	GGATG	2 cut(s)	259, 457
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	3 cut(s)	432, 528, 725
BseNI	ACTGG	2 cut(s)	184, 640
BseXI	GCAGC	2 cut(s)	179, 342
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	159, 546
BshTI	ACCGGT	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	44, 279
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	2 cut(s)	159, 546
BsoBI	CYCGRG	1 cut(s)	110
Bsp119I	TTCGAA	2 cut(s)	71, 362
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	48, 461
Bsp1720I	GCTNAGC	1 cut(s)	441
BspACI	CCGC	3 cut(s)	5, 54, 240
BspANI	GGCC	2 cut(s)	159, 546
BspCNI	CTCAG	3 cut(s)	433, 527, 726
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	469
BspT104I	TTCGAA	2 cut(s)	71, 362
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	184, 640
BssAI	RCCGGY	1 cut(s)	278
BssMI	GATC	2 cut(s)	48, 461
Bst2UI	CCWGG	2 cut(s)	352, 459
Bst4CI	ACNGT	1 cut(s)	412
BstBI	TTCGAA	2 cut(s)	71, 362
BstC8I	GCNNGC	1 cut(s)	646
BstDEI	CTNAG	4 cut(s)	369, 441, 514, 734
BstF5I	GGATG	2 cut(s)	259, 457
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	750
BstHHI	GCGC	2 cut(s)	9, 749
BstKTI	GATC	2 cut(s)	51, 464
BstMBI	GATC	2 cut(s)	48, 461
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 335, 600
BstNI	CCWGG	2 cut(s)	352, 459
BstNSI	RCATGY	2 cut(s)	648, 744
BstSCI	CCNGG	2 cut(s)	350, 457
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	2 cut(s)	179, 342
BstV2I	GAAGAC	1 cut(s)	558
Bsu36I	CCTNAGG	1 cut(s)	734
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	159, 546
BtsCI	GGATG	2 cut(s)	259, 457
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	646
CfoI	GCGC	2 cut(s)	9, 749
Cfr10I	RCCGGY	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	391, 726
CspAI	ACCGGT	1 cut(s)	278
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	5 cut(s)	446, 569, 600, 645, 741
CviQI	GTAC	2 cut(s)	391, 726
DdeI	CTNAG	4 cut(s)	369, 441, 514, 734
DpnI	GATC	2 cut(s)	50, 463
DpnII	GATC	2 cut(s)	48, 461
DraI	TTTAAA	1 cut(s)	537
EciI	GGCGGA	1 cut(s)	43
Eco147I	AGGCCT	1 cut(s)	546
Eco81I	CCTNAGG	1 cut(s)	734
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	350, 457
FaeI	CATG	5 cut(s)	449, 572, 603, 648, 744
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	5 cut(s)	445, 568, 599, 644, 740
Fnu4HI	GCNGC	3 cut(s)	5, 193, 356
FokI	GGATG	2 cut(s)	266, 464
Fsp4HI	GCNGC	3 cut(s)	5, 193, 356
GlaI	GCGC	2 cut(s)	8, 748
GluI	GCNGC	3 cut(s)	5, 193, 356
GsuI	CTGGAG	1 cut(s)	657
HaeII	RGCGCY	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	159, 546
HapII	CCGG	2 cut(s)	44, 279
HhaI	GCGC	2 cut(s)	9, 749
Hin1II	CATG	5 cut(s)	449, 572, 603, 648, 744
Hin6I	GCGC	2 cut(s)	7, 747
HinP1I	GCGC	2 cut(s)	7, 747
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	2 cut(s)	210, 218
HinfI	GANTC	5 cut(s)	28, 364, 499, 596, 674
HpaII	CCGG	2 cut(s)	44, 279
HphI	GGTGA	3 cut(s)	254, 299, 397
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	4 cut(s)	14, 127, 175, 715
Hpy188III	TCNNGA	4 cut(s)	112, 134, 465, 527
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	2 cut(s)	18, 150
HpyAV	CCTTC	3 cut(s)	67, 336, 369
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	148, 532
HpyCH4V	TGCA	3 cut(s)	167, 225, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 335, 600
HpyF3I	CTNAG	4 cut(s)	369, 441, 514, 734
HpySE526I	ACGT	2 cut(s)	148, 532
Hsp92II	CATG	5 cut(s)	449, 572, 603, 648, 744
HspAI	GCGC	2 cut(s)	7, 747
Kzo9I	GATC	2 cut(s)	48, 461
LmnI	GCTCC	2 cut(s)	46, 616
Lsp1109I	GCAGC	2 cut(s)	179, 342
LweI	GCATC	1 cut(s)	628
MaeII	ACGT	2 cut(s)	148, 532
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	50, 463
MboI	GATC	2 cut(s)	48, 461
MboII	GAAGA	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	4 cut(s)	73, 383, 426, 610
MlyI	GAGTC	2 cut(s)	22, 605
MmeI	TCCRAC	2 cut(s)	37, 166
MnlI	CCTC	5 cut(s)	30, 223, 319, 729, 751
MseI	TTAA	2 cut(s)	536, 564
MslI	CAYNNNNRTG	2 cut(s)	410, 450
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	2 cut(s)	44, 279
MspR9I	CCNGG	2 cut(s)	352, 459
MvaI	CCWGG	2 cut(s)	352, 459
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	53, 335, 600
NdeII	GATC	2 cut(s)	48, 461
NlaIII	CATG	5 cut(s)	449, 572, 603, 648, 744
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	2 cut(s)	648, 744
NspV	TTCGAA	2 cut(s)	71, 362
OliI	CACNNNNGTG	1 cut(s)	410
PaeI	GCATGC	1 cut(s)	648
PaeR7I	CTCGAG	1 cut(s)	110
PceI	AGGCCT	1 cut(s)	546
PciI	ACATGT	1 cut(s)	740
PfeI	GAWTC	3 cut(s)	364, 499, 674
PfoI	TCCNGGA	1 cut(s)	457
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	6, 194, 357
PleI	GAGTC	2 cut(s)	22, 604
PpsI	GAGTC	2 cut(s)	22, 604
PscI	ACATGT	1 cut(s)	740
Psp1406I	AACGTT	1 cut(s)	532
Psp6I	CCWGG	2 cut(s)	350, 457
PspGI	CCWGG	2 cut(s)	350, 457
PspN4I	GGNNCC	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	392, 727
RsaNI	GTAC	2 cut(s)	391, 726
RseI	CAYNNNNRTG	2 cut(s)	410, 450
SaqAI	TTAA	2 cut(s)	536, 564
SatI	GCNGC	3 cut(s)	5, 193, 356
Sau3AI	GATC	2 cut(s)	48, 461
ScaI	AGTACT	1 cut(s)	727
SchI	GAGTC	2 cut(s)	22, 605
ScrFI	CCNGG	2 cut(s)	352, 459
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	628
Sfr274I	CTCGAG	1 cut(s)	110
SfuI	TTCGAA	2 cut(s)	71, 362
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	410, 450
SmlI	CTYRAG	2 cut(s)	110, 623
SmoI	CTYRAG	2 cut(s)	110, 623
SphI	GCATGC	1 cut(s)	648
Sse9I	AATT	4 cut(s)	73, 383, 426, 610
SseBI	AGGCCT	1 cut(s)	546
SsiI	CCGC	3 cut(s)	5, 54, 240
StuI	AGGCCT	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	350, 457
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	2 cut(s)	151, 535
TaqI	TCGA	4 cut(s)	71, 111, 135, 362
TasI	AATT	4 cut(s)	73, 383, 426, 610
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	364, 499, 674
Tru1I	TTAA	2 cut(s)	536, 564
Tru9I	TTAA	2 cut(s)	536, 564
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	2 cut(s)	192, 355
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	3 cut(s)	92, 486, 507
TspGWI	ACGGA	2 cut(s)	23, 256
TspRI	CASTG	1 cut(s)	415
XapI	RAATTY	2 cut(s)	73, 383
XceI	RCATGY	2 cut(s)	648, 744
XhoI	CTCGAG	1 cut(s)	110
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.