Rh4CG431700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
67194000 .. 67197809
3810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG431700.1

Sequence Viewer

Length: 1458 bp
ATGAACATTGCTTCCGGTTCCCTTCCAGAGCTGTGTCTACAGTTAATTTCTTCTGCATTTCAACGATGCCGCGCTTCCGACGACCTCTGCAGACTCTCCGTCGTTCTCCGGCGATCTCCTCCTTCCAATCTCGTTCGAATTTCTGTTTCGGATACTGGTGTTGGAAGCTGCGTGGAGGAGTTTGAAGCTTTGAAGCTTTGCAGGGAGGCTTTTGGCGGTGAGATTTGGGATGGATTGCTTTCCGTCACAACCACCGGTTTTGGTGATAATGAGATATATCACTATGAGTTCAATCTAAAAGAGGCTGTGTCTGCCAGAAGGTTGACCAGGCTGCCTTCGAATCCTAAGAATGGGCAGAAATTCAGGTACGAAAATCGGCTCACCACTGTGCTGATCCTCATTCTAAAGATCCCTAATGTTGCAATTCAGCTGGTGGCTGAGCATGGGGATGTTCCTGGATCACGATATGAAAGTGTTTTTCTGGCAAATGAATGGAATCCTTTACCTTTCTCAGCTTCAAATCTTGAACGTTTAAAGTCAGGCCTTGAAGACTATGTTTTTAAGCATGGAAATACATTAGGAAAAAAATGCGAGTCATGCTTCTCAAATTGGGAGCATCTCAAGGTTGGGACTGGAGTAGCATGCCACACAGAAAGTCGTAGATATTCTGAATCAGTTATGGAAGCTGTGATTGTAATAAGTGAAATATCAGAGATAGCGAGTACTTGCCTGAGGACATGTGGCGCCAAAACAGAGGTTTTGTATTTCAAAGATTTCTCACCTTGCCCAATTTCCCAATCATCTGTGAAGGCATTAACAAGCATTGACTGGAAAAGTTATGGATTGACTTTTGGGGGCGTTGTGGAGCAGGGTGGCTATGCATTACTGAAATGGGATAACTTGCCACCATATGTTCAAATTGACATTTCCCTCCACCACTACCATAACCAATATCCAAAATTATGTCGGATGCTTAATTTTCTCAACATTAGTCAACTTTTCCCTGAAATGCTTTTTGTTATGGTTACAACACCATCAGCAAGGCTAAAGATGCAACCTGATCAAAAACTTGTAAAAAAGGCAGTTAAATTTGCATTGAATGATTTGAAGGACAAACATGCTGGAGTTCTTCTAAGTGCCCATGCCCTCAAGGTTCGTGACTGTGCCCCTGATCTTGCAAAAACAATTTCTAGCCTAATCCTGTGCTCCAATGACTCAAATTTCCGAGAAGAATGCTTTTCTTTTCTCGGTTTACCATTTCAAGGAGTAGGAAGTGAACTTGTTGAAGACTGTATAAAGGAAAAGATCATTTCAGTCATAGACATGAACGACAGAGAACAACCCCAGAGAAGCAAAGAAGTTCCAACTTTTCTTTTTGAAGATGATCACTTCCAGGATTCAGGGTCTGAAGATGAGGAATATGAAGGTGAGGATGATTTTACCTCTATGGATATATAA

Protein Analysis

485

Amino Acids

54.4

Weight (kDa)

5.38

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 743
AccI GTMKAC 1 cut(s) 37
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 70, 216
AclI AACGTT 1 cut(s) 529
AclWI GGATC 3 cut(s) 388, 403, 466
AcsI RAATTY 4 cut(s) 138, 359, 1088, 1219
AcuI CTGAAG 1 cut(s) 1428
AcyI GRCGYC 1 cut(s) 744
AfaI GTAC 2 cut(s) 368, 724
AfiI CCNNNNNNNGG 2 cut(s) 350, 1262
AflIII ACRYGT 1 cut(s) 737
AgeI ACCGGT 1 cut(s) 254
AhdI GACNNNNNGTC 1 cut(s) 98
AjnI CCWGG 3 cut(s) 326, 454, 1392
AleI CACNNNNGTG 1 cut(s) 386
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 7 cut(s) 31, 168, 188, 196, 430, 515, 686
AluI AGCT 7 cut(s) 31, 168, 188, 196, 430, 515, 686
Alw21I GWGCWC 1 cut(s) 1208
AlwI GGATC 3 cut(s) 388, 403, 466
AlwNI CAGNNNCTG 1 cut(s) 1406
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 2 cut(s) 168, 331
ApoI RAATTY 4 cut(s) 138, 359, 1088, 1219
AsiGI ACCGGT 1 cut(s) 254
AspLEI GCGC 2 cut(s) 74, 746
AsuHPI GGTGA 5 cut(s) 230, 275, 373, 771, 1439
AsuII TTCGAA 2 cut(s) 136, 338
AxyI CCTNAGG 1 cut(s) 731
BaeGI GKGCMC 2 cut(s) 1141, 1168
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BanI GGYRCC 1 cut(s) 743
BbsI GAAGAC 2 cut(s) 555, 1293
Bbv12I GWGCWC 1 cut(s) 1208
BbvI GCAGC 2 cut(s) 155, 318
BccI CCATC 2 cut(s) 224, 1042
BcgI CGANNNNNNTGC 2 cut(s) 1215, 1249
BciT130I CCWGG 3 cut(s) 328, 456, 1394
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 2 cut(s) 1060, 1384
BfaI CTAG 1 cut(s) 1191
BfmI CTRYAG 2 cut(s) 38, 88
BfoI RGCGCY 1 cut(s) 747
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 3 cut(s) 70, 169, 332
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 3 cut(s) 71, 170, 333
BmcAI AGTACT 1 cut(s) 724
Bme1390I CCNGG 3 cut(s) 328, 456, 1394
BmeRI GACNNNNNGTC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 19, 745
BmrFI CCNGG 3 cut(s) 328, 456, 1394
BmsI GCATC 4 cut(s) 56, 625, 960, 1041
BpiI GAAGAC 2 cut(s) 555, 1293
BpmI CTGGAG 2 cut(s) 654, 1143
Bpu1102I GCTNAGC 1 cut(s) 438
Bpu14I TTCGAA 2 cut(s) 136, 338
BpuEI CTTGAG 2 cut(s) 605, 1133
BsaHI GRCGYC 1 cut(s) 744
BsaWI WCCGGW 2 cut(s) 14, 254
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 1262
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 160, 637, 833
Bse21I CCTNAGG 1 cut(s) 731
Bse3DI GCAATG 1 cut(s) 6
BseBI CCWGG 3 cut(s) 328, 456, 1394
BseGI GGATG 4 cut(s) 235, 454, 975, 1438
BseLI CCNNNNNNNGG 2 cut(s) 350, 1262
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 3 cut(s) 429, 525, 722
BseNI ACTGG 3 cut(s) 160, 637, 833
BseRI GAGGAG 2 cut(s) 108, 191
BseSI GKGCMC 2 cut(s) 1141, 1168
BseXI GCAGC 2 cut(s) 155, 318
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 543
BshNI GGYRCC 1 cut(s) 743
BshTI ACCGGT 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 1208
BsiSI CCGG 3 cut(s) 15, 109, 255
BslFI GGGAC 1 cut(s) 643
BslI CCNNNNNNNGG 2 cut(s) 350, 1262
BsmFI GGGAC 1 cut(s) 643
BsmI GAATGC 1 cut(s) 1238
BsnI GGCC 1 cut(s) 543
Bsp119I TTCGAA 2 cut(s) 136, 338
Bsp1286I GDGCHC 3 cut(s) 1141, 1168, 1208
Bsp143I GATC 8 cut(s) 113, 393, 408, 458, 1060, 1171, 1305, 1384
Bsp1720I GCTNAGC 1 cut(s) 438
BspACI CCGC 2 cut(s) 70, 216
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 3 cut(s) 430, 524, 723
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 19, 745
BspMAI CTGCAG 1 cut(s) 92
BspPI GGATC 3 cut(s) 388, 403, 466
BspT104I TTCGAA 2 cut(s) 136, 338
BspT107I GGYRCC 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 3 cut(s) 160, 637, 833
BssAI RCCGGY 1 cut(s) 254
BssMI GATC 8 cut(s) 113, 393, 408, 458, 1060, 1171, 1305, 1384
BssNI GRCGYC 1 cut(s) 744
Bst2UI CCWGG 3 cut(s) 328, 456, 1394
Bst4CI ACNGT 4 cut(s) 42, 388, 1163, 1292
BstACI GRCGYC 1 cut(s) 744
BstBI TTCGAA 2 cut(s) 136, 338
BstC8I GCNNGC 1 cut(s) 643
BstDEI CTNAG 5 cut(s) 345, 438, 511, 731, 1133
BstF5I GGATG 4 cut(s) 235, 454, 975, 1438
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 2 cut(s) 74, 746
BstKTI GATC 8 cut(s) 116, 396, 411, 461, 1063, 1174, 1308, 1387
BstMBI GATC 8 cut(s) 113, 393, 408, 458, 1060, 1171, 1305, 1384
BstMWI GCNNNNNNNGC 3 cut(s) 311, 597, 1051
BstNI CCWGG 3 cut(s) 328, 456, 1394
BstNSI RCATGY 3 cut(s) 645, 741, 1121
BstSCI CCNGG 3 cut(s) 326, 454, 1392
BstSFI CTRYAG 2 cut(s) 38, 88
BstSLI GKGCMC 2 cut(s) 1141, 1168
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 155, 318
BstV2I GAAGAC 2 cut(s) 555, 1293
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
Bsu36I CCTNAGG 1 cut(s) 731
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 543
BtsCI GGATG 4 cut(s) 235, 454, 975, 1438
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 643
CaiI CAGNNNCTG 1 cut(s) 1406
CfoI GCGC 2 cut(s) 74, 746
Cfr10I RCCGGY 1 cut(s) 254
Csp6I GTAC 2 cut(s) 367, 723
CspAI ACCGGT 1 cut(s) 254
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 8 cut(s) 443, 566, 597, 642, 738, 1118, 1142, 1324
CviQI GTAC 2 cut(s) 367, 723
DdeI CTNAG 5 cut(s) 345, 438, 511, 731, 1133
DinI GGCGCC 1 cut(s) 745
DpnI GATC 8 cut(s) 115, 395, 410, 460, 1062, 1173, 1307, 1386
DpnII GATC 8 cut(s) 113, 393, 408, 458, 1060, 1171, 1305, 1384
DraI TTTAAA 1 cut(s) 534
DriI GACNNNNNGTC 1 cut(s) 98
Eam1105I GACNNNNNGTC 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 1428
Eco81I CCTNAGG 1 cut(s) 731
EcoRII CCWGG 3 cut(s) 326, 454, 1392
EcoT22I ATGCAT 1 cut(s) 883
EgeI GGCGCC 1 cut(s) 745
EheI GGCGCC 1 cut(s) 745
FaeI CATG 8 cut(s) 446, 569, 600, 645, 741, 1121, 1145, 1327
FaqI GGGAC 1 cut(s) 643
FatI CATG 8 cut(s) 442, 565, 596, 641, 737, 1117, 1141, 1323
FauNDI CATATG 1 cut(s) 910
FbaI TGATCA 2 cut(s) 1060, 1384
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 70, 169, 332
FokI GGATG 4 cut(s) 242, 461, 982, 1445
Fsp4HI GCNGC 3 cut(s) 70, 169, 332
FspBI CTAG 1 cut(s) 1191
GlaI GCGC 2 cut(s) 73, 745
GluI GCNGC 3 cut(s) 70, 169, 332
GsuI CTGGAG 2 cut(s) 654, 1143
HaeII RGCGCY 1 cut(s) 747
HaeIII GGCC 1 cut(s) 543
HapII CCGG 3 cut(s) 15, 109, 255
HhaI GCGC 2 cut(s) 74, 746
Hin1I GRCGYC 1 cut(s) 744
Hin1II CATG 8 cut(s) 446, 569, 600, 645, 741, 1121, 1145, 1327
Hin6I GCGC 2 cut(s) 72, 744
HinP1I GCGC 2 cut(s) 72, 744
HincII GTYRAC 2 cut(s) 324, 995
HindII GTYRAC 2 cut(s) 324, 995
HindIII AAGCTT 2 cut(s) 186, 194
HinfI GANTC 7 cut(s) 93, 340, 496, 593, 671, 1214, 1397
HpaII CCGG 3 cut(s) 15, 109, 255
HphI GGTGA 5 cut(s) 230, 275, 373, 771, 1439
Hpy166II GTNNAC 5 cut(s) 38, 324, 995, 1253, 1277
Hpy188I TCNGA 7 cut(s) 79, 151, 670, 712, 969, 1226, 1408
Hpy188III TCNNGA 4 cut(s) 26, 462, 524, 1157
Hpy8I GTNNAC 5 cut(s) 38, 324, 995, 1253, 1277
Hpy99I CGWCG 2 cut(s) 83, 104
HpyAV CCTTC 7 cut(s) 32, 132, 312, 345, 802, 1102, 1418
HpyCH4III ACNGT 4 cut(s) 42, 388, 1163, 1292
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 8 cut(s) 56, 90, 201, 422, 881, 1054, 1094, 1178
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 597, 1051
HpyF3I CTNAG 5 cut(s) 345, 438, 511, 731, 1133
HpySE526I ACGT 1 cut(s) 529
Hsp92I GRCGYC 1 cut(s) 744
Hsp92II CATG 8 cut(s) 446, 569, 600, 645, 741, 1121, 1145, 1327
HspAI GCGC 2 cut(s) 72, 744
KasI GGCGCC 1 cut(s) 743
Ksp22I TGATCA 2 cut(s) 1060, 1384
Kzo9I GATC 8 cut(s) 113, 393, 408, 458, 1060, 1171, 1305, 1384
LmnI GCTCC 3 cut(s) 613, 865, 1211
Lsp1109I GCAGC 2 cut(s) 155, 318
LweI GCATC 4 cut(s) 56, 625, 960, 1041
MaeI CTAG 1 cut(s) 1191
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 3 cut(s) 244, 1024, 1157
MalI GATC 8 cut(s) 115, 395, 410, 460, 1062, 1173, 1307, 1386
MboI GATC 8 cut(s) 113, 393, 408, 458, 1060, 1171, 1305, 1384
MboII GAAGA 7 cut(s) 42, 560, 1121, 1241, 1298, 1391, 1421
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 1141, 1168, 1208
Mly113I GGCGCC 1 cut(s) 744
MlyI GAGTC 3 cut(s) 87, 602, 1208
MmeI TCCRAC 4 cut(s) 102, 142, 947, 1388
Mph1103I ATGCAT 1 cut(s) 883
MseI TTAA 6 cut(s) 44, 533, 561, 815, 975, 1086
MslI CAYNNNNRTG 3 cut(s) 386, 447, 1322
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 3 cut(s) 15, 109, 255
MspR9I CCNGG 3 cut(s) 328, 456, 1394
Mva1269I GAATGC 1 cut(s) 1238
MvaI CCWGG 3 cut(s) 328, 456, 1394
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 311, 597, 1051
NarI GGCGCC 1 cut(s) 744
NdeI CATATG 1 cut(s) 910
NdeII GATC 8 cut(s) 113, 393, 408, 458, 1060, 1171, 1305, 1384
NlaIII CATG 8 cut(s) 446, 569, 600, 645, 741, 1121, 1145, 1327
NlaIV GGNNCC 2 cut(s) 19, 745
NmuCI GTSAC 2 cut(s) 244, 1157
NsiI ATGCAT 1 cut(s) 883
NspI RCATGY 3 cut(s) 645, 741, 1121
NspV TTCGAA 2 cut(s) 136, 338
OliI CACNNNNGTG 1 cut(s) 386
PaeI GCATGC 1 cut(s) 645
PceI AGGCCT 1 cut(s) 543
PciI ACATGT 1 cut(s) 737
PctI GAATGC 1 cut(s) 1238
PfeI GAWTC 4 cut(s) 340, 496, 671, 1397
PfoI TCCNGGA 2 cut(s) 454, 1392
PinAI ACCGGT 1 cut(s) 254
PkrI GCNGC 3 cut(s) 71, 170, 333
PleI GAGTC 3 cut(s) 87, 601, 1208
PluTI GGCGCC 1 cut(s) 747
PpsI GAGTC 3 cut(s) 87, 601, 1208
PscI ACATGT 1 cut(s) 737
Psp1406I AACGTT 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 326, 454, 1392
PspGI CCWGG 3 cut(s) 326, 454, 1392
PspN4I GGNNCC 2 cut(s) 19, 745
PstI CTGCAG 1 cut(s) 92
PstNI CAGNNNCTG 1 cut(s) 1406
PsuI RGATCY 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 2 cut(s) 368, 724
RsaNI GTAC 2 cut(s) 367, 723
RseI CAYNNNNRTG 3 cut(s) 386, 447, 1322
SaqAI TTAA 6 cut(s) 44, 533, 561, 815, 975, 1086
SatI GCNGC 3 cut(s) 70, 169, 332
Sau3AI GATC 8 cut(s) 113, 393, 408, 458, 1060, 1171, 1305, 1384
ScaI AGTACT 1 cut(s) 724
SchI GAGTC 3 cut(s) 87, 602, 1208
ScrFI CCNGG 3 cut(s) 328, 456, 1394
SduI GDGCHC 3 cut(s) 1141, 1168, 1208
SfaNI GCATC 4 cut(s) 56, 625, 960, 1041
SfcI CTRYAG 2 cut(s) 38, 88
SfoI GGCGCC 1 cut(s) 745
SfuI TTCGAA 2 cut(s) 136, 338
SmiMI CAYNNNNRTG 3 cut(s) 386, 447, 1322
SmlI CTYRAG 2 cut(s) 620, 1148
SmoI CTYRAG 2 cut(s) 620, 1148
SphI GCATGC 1 cut(s) 645
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 2 cut(s) 70, 216
SspDI GGCGCC 1 cut(s) 743
SspMI CTAG 1 cut(s) 1191
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 3 cut(s) 326, 454, 1392
TaaI ACNGT 4 cut(s) 42, 388, 1163, 1292
TaiI ACGT 1 cut(s) 532
TaqI TCGA 2 cut(s) 136, 338
TatI WGTACW 1 cut(s) 722
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 4 cut(s) 340, 496, 671, 1397
Tru1I TTAA 6 cut(s) 44, 533, 561, 815, 975, 1086
Tru9I TTAA 6 cut(s) 44, 533, 561, 815, 975, 1086
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 2 cut(s) 244, 1157
TseI GCWGC 2 cut(s) 168, 331
Tsp45I GTSAC 2 cut(s) 244, 1157
TspDTI ATGAA 5 cut(s) 17, 483, 504, 1340, 1437
TspGWI ACGGA 2 cut(s) 88, 232
TspRI CASTG 1 cut(s) 391
XapI RAATTY 4 cut(s) 138, 359, 1088, 1219
XceI RCATGY 3 cut(s) 645, 741, 1121
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 1 cut(s) 1191
ZrmI AGTACT 1 cut(s) 724
Zsp2I ATGCAT 1 cut(s) 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.