Rroxscaffold_5G00384230

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
63713420 .. 63717243
3824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384230.1

Sequence Viewer

Length: 1395 bp
ATGAACACTGCTTCCGGTTCCCTTCCAGAGCTGTGTCTACAGTTAATTTCTTCTGCATTTCAGCGATGCCGCGCTTCCGACGACCTCTGCAGACTCTCCGTCGTTCTCCGGCGATCTCCGCCTTCCAATCTCGTTCGAATTTCAGTTTCGGATACTGGTGTTGGAAGCTGCGTGGAGGAGTTTGAAGCTTTGAAGCTTTGCAGGGAGGCTTTTGGCGGTGAGATTTGGGATGGATTGCTTTCCGTCACAACCACCGGTTTTGGTGATAATGAGATATATCACTATGAGTTCAATCTAAAAGAGGCTGTGTCTGCCAGAAGGTTGACCAGGCTGCCTTCGAATCCTAAGAATGGGCAGAAATTCAGTGGGACTGAAGTGTGTCTGTCGATTTTTGAAAGCGTTGATGTTTTGCTAGGCCAGATTAGTCGCTTCTTTCAGAAGATCCTCATTCTAAAGATCCCTAATGTTGCAATTCAGCTGGCGGCTGAGCATGGGGATGTTCCTGGATCACGATATGAAAGTGTTTTTCTGGCAAATGAATGGAATCCTTTACCTTTCTCAGCTTCAAATCTTGAACGTTTAAAGTCAGGCCTTGAAGACTATGTTTTTAAGCATGGAAATACATTAGGAAAAAAATGCGAGTCATGCTTCTCAAATTGGGAGCATCTCAAGGTTGGGACTGGAGTAGCATGCCACACAGAAAGCCGTAGATATTCTGAATCAGTAATGGAAGCTGTGATTGTAATAAGTGAAATATCAGAGCTAGCGAGTACTTGCCTGAGGACATGTGGCTCCAAAACAGAGGTTTTGTATTTCAAAGATTTCTCACCTTGCCCAATTTCCCAATCATCTGTGAAGGCATTAACAAGCATTGACTGGAAAAGTTATGGATTGACTTTTGGAGGCGTTGTGGAGCAGGGTGGCTGTGCATTACTGAAATGGGATAACTTGCCACCATATGTTACAACACCATCAGCAAGGCTAAAGATGCAACCTGATCAAAAACTTGTAAAAAAGGCAGTTAAATTTGCATTGAATGATTTGAAGGACAAACATGCTGGAGTTCTTCTAAGTGCCCATGCCCTCAAGGTTCGTGACTGTGCCCCTGATCTTGCAAGAACAATTTCTAGCCTAATCCTGTGCTCCAACGACTCAAATTTCCGAGAAGAATGCTTTTCTTTTCTCGGTTTACCATTTCAAGGAGTAGGAAGTGAACTTGTTGAAGACTGTATAAAGGAAAAGATCATTTTAGTCATGGACATGAACGACAGAGAACAACCCCAGAGAAGCAAAGAAGTTCCAACTTTTCTTTTTGAAGATGATCACTTCCAGGATTCAGGGTCTCAACATGAGGAATATGAAGGTGAGGATGCTTTTACCTCTATGGATATATAA

Protein Analysis

464

Amino Acids

51.48

Weight (kDa)

5.32

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 37
AccII CGCG 1 cut(s) 72
AciI CCGC 4 cut(s) 70, 119, 216, 482
AclI AACGTT 1 cut(s) 577
AclWI GGATC 3 cut(s) 436, 451, 514
AcsI RAATTY 4 cut(s) 138, 359, 1025, 1156
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 1 cut(s) 772
AfiI CCNNNNNNNGG 2 cut(s) 350, 1199
AflIII ACRYGT 1 cut(s) 785
AgeI ACCGGT 1 cut(s) 254
AhdI GACNNNNNGTC 1 cut(s) 98
AjnI CCWGG 3 cut(s) 326, 502, 1329
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 8 cut(s) 31, 168, 188, 196, 478, 563, 734, 763
AluI AGCT 8 cut(s) 31, 168, 188, 196, 478, 563, 734, 763
Alw21I GWGCWC 1 cut(s) 1145
Alw26I GTCTC 1 cut(s) 1347
AlwI GGATC 3 cut(s) 436, 451, 514
AoxI GGCC 2 cut(s) 415, 589
ApeKI GCWGC 2 cut(s) 168, 331
ApoI RAATTY 4 cut(s) 138, 359, 1025, 1156
AsiGI ACCGGT 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 1123
AspLEI GCGC 1 cut(s) 74
AsuHPI GGTGA 4 cut(s) 230, 275, 819, 1376
AsuII TTCGAA 2 cut(s) 136, 338
AsuNHI GCTAGC 1 cut(s) 763
AxyI CCTNAGG 1 cut(s) 779
BaeGI GKGCMC 2 cut(s) 1078, 1105
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BbsI GAAGAC 2 cut(s) 603, 1230
Bbv12I GWGCWC 1 cut(s) 1145
BbvI GCAGC 2 cut(s) 155, 318
BccI CCATC 2 cut(s) 224, 979
BceAI ACGGC 1 cut(s) 690
BcgI CGANNNNNNTGC 2 cut(s) 1152, 1186
BciT130I CCWGG 3 cut(s) 328, 504, 1331
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 2 cut(s) 997, 1321
BcoDI GTCTC 1 cut(s) 1347
BfaI CTAG 3 cut(s) 413, 764, 1128
BfmI CTRYAG 2 cut(s) 38, 88
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 4 cut(s) 70, 169, 332, 483
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 4 cut(s) 71, 170, 333, 484
BmcAI AGTACT 1 cut(s) 772
Bme1390I CCNGG 3 cut(s) 328, 504, 1331
BmeRI GACNNNNNGTC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 19, 793
BmrFI CCNGG 3 cut(s) 328, 504, 1331
BmsI GCATC 4 cut(s) 56, 673, 978, 1360
BmtI GCTAGC 1 cut(s) 767
BpiI GAAGAC 2 cut(s) 603, 1230
BpmI CTGGAG 2 cut(s) 702, 1080
Bpu1102I GCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 2 cut(s) 136, 338
BpuEI CTTGAG 2 cut(s) 653, 1070
BsaI GGTCTC 1 cut(s) 1347
BsaWI WCCGGW 2 cut(s) 14, 254
BsaXI ACNNNNNCTCC 2 cut(s) 894, 924
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 1199
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 160, 685, 881
Bse21I CCTNAGG 1 cut(s) 779
BseBI CCWGG 3 cut(s) 328, 504, 1331
BseGI GGATG 3 cut(s) 235, 502, 1375
BseLI CCNNNNNNNGG 2 cut(s) 350, 1199
BseMII CTCAG 3 cut(s) 477, 573, 770
BseNI ACTGG 3 cut(s) 160, 685, 881
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 2 cut(s) 1078, 1105
BseXI GCAGC 2 cut(s) 155, 318
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 417, 591
BshTI ACCGGT 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 1145
BsiSI CCGG 3 cut(s) 15, 109, 255
BslFI GGGAC 2 cut(s) 382, 691
BslI CCNNNNNNNGG 2 cut(s) 350, 1199
BsmAI GTCTC 1 cut(s) 1347
BsmFI GGGAC 2 cut(s) 382, 691
BsmI GAATGC 1 cut(s) 1175
BsnI GGCC 2 cut(s) 417, 591
Bso31I GGTCTC 1 cut(s) 1347
Bsp119I TTCGAA 2 cut(s) 136, 338
Bsp1286I GDGCHC 3 cut(s) 1078, 1105, 1145
Bsp143I GATC 8 cut(s) 113, 441, 456, 506, 997, 1108, 1242, 1321
Bsp1720I GCTNAGC 1 cut(s) 486
BspACI CCGC 4 cut(s) 70, 119, 216, 482
BspANI GGCC 2 cut(s) 417, 591
BspCNI CTCAG 3 cut(s) 478, 572, 771
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 19, 793
BspMAI CTGCAG 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 767
BspPI GGATC 3 cut(s) 436, 451, 514
BspT104I TTCGAA 2 cut(s) 136, 338
BspTNI GGTCTC 1 cut(s) 1347
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 3 cut(s) 160, 685, 881
BssAI RCCGGY 1 cut(s) 254
BssMI GATC 8 cut(s) 113, 441, 456, 506, 997, 1108, 1242, 1321
Bst2UI CCWGG 3 cut(s) 328, 504, 1331
Bst4CI ACNGT 3 cut(s) 42, 1100, 1229
BstBI TTCGAA 2 cut(s) 136, 338
BstC8I GCNNGC 3 cut(s) 480, 691, 765
BstDEI CTNAG 5 cut(s) 345, 486, 559, 779, 1070
BstF5I GGATG 3 cut(s) 235, 502, 1375
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 8 cut(s) 116, 444, 459, 509, 1000, 1111, 1245, 1324
BstMAI GTCTC 1 cut(s) 1347
BstMBI GATC 8 cut(s) 113, 441, 456, 506, 997, 1108, 1242, 1321
BstMWI GCNNNNNNNGC 4 cut(s) 118, 311, 645, 988
BstNI CCWGG 3 cut(s) 328, 504, 1331
BstNSI RCATGY 3 cut(s) 693, 789, 1058
BstSCI CCNGG 3 cut(s) 326, 502, 1329
BstSFI CTRYAG 2 cut(s) 38, 88
BstSLI GKGCMC 2 cut(s) 1078, 1105
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 155, 318
BstV2I GAAGAC 2 cut(s) 603, 1230
BstX2I RGATCY 2 cut(s) 441, 456
BstYI RGATCY 2 cut(s) 441, 456
Bsu36I CCTNAGG 1 cut(s) 779
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 417, 591
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 3 cut(s) 235, 502, 1375
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 2 cut(s) 6, 370
Cac8I GCNNGC 3 cut(s) 480, 691, 765
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 254
Csp6I GTAC 1 cut(s) 771
CspAI ACCGGT 1 cut(s) 254
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviQI GTAC 1 cut(s) 771
DdeI CTNAG 5 cut(s) 345, 486, 559, 779, 1070
DpnI GATC 8 cut(s) 115, 443, 458, 508, 999, 1110, 1244, 1323
DpnII GATC 8 cut(s) 113, 441, 456, 506, 997, 1108, 1242, 1321
DraI TTTAAA 1 cut(s) 582
DriI GACNNNNNGTC 1 cut(s) 98
Eam1105I GACNNNNNGTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 591
Eco31I GGTCTC 1 cut(s) 1347
Eco57I CTGAAG 1 cut(s) 393
Eco81I CCTNAGG 1 cut(s) 779
EcoRII CCWGG 3 cut(s) 326, 502, 1329
FaqI GGGAC 2 cut(s) 382, 691
FauNDI CATATG 1 cut(s) 958
FbaI TGATCA 2 cut(s) 997, 1321
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 4 cut(s) 70, 169, 332, 483
FokI GGATG 3 cut(s) 242, 509, 1382
Fsp4HI GCNGC 4 cut(s) 70, 169, 332, 483
FspBI CTAG 3 cut(s) 413, 764, 1128
GlaI GCGC 1 cut(s) 73
GluI GCNGC 4 cut(s) 70, 169, 332, 483
GsuI CTGGAG 2 cut(s) 702, 1080
HaeIII GGCC 2 cut(s) 417, 591
HapII CCGG 3 cut(s) 15, 109, 255
HhaI GCGC 1 cut(s) 74
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HindIII AAGCTT 2 cut(s) 186, 194
HinfI GANTC 7 cut(s) 93, 340, 544, 641, 719, 1151, 1334
HpaII CCGG 3 cut(s) 15, 109, 255
HphI GGTGA 4 cut(s) 230, 275, 819, 1376
Hpy166II GTNNAC 4 cut(s) 38, 324, 1190, 1214
Hpy188I TCNGA 6 cut(s) 79, 151, 438, 718, 760, 1163
Hpy188III TCNNGA 4 cut(s) 26, 510, 572, 1094
Hpy8I GTNNAC 4 cut(s) 38, 324, 1190, 1214
Hpy99I CGWCG 2 cut(s) 83, 104
HpyAV CCTTC 7 cut(s) 32, 132, 312, 345, 850, 1039, 1355
HpyCH4III ACNGT 3 cut(s) 42, 1100, 1229
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 8 cut(s) 56, 90, 201, 470, 929, 991, 1031, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 311, 645, 988
HpyF3I CTNAG 5 cut(s) 345, 486, 559, 779, 1070
HpySE526I ACGT 1 cut(s) 577
HspAI GCGC 1 cut(s) 72
Ksp22I TGATCA 2 cut(s) 997, 1321
Kzo9I GATC 8 cut(s) 113, 441, 456, 506, 997, 1108, 1242, 1321
LmnI GCTCC 4 cut(s) 661, 797, 913, 1148
Lsp1109I GCAGC 2 cut(s) 155, 318
LweI GCATC 4 cut(s) 56, 673, 978, 1360
MaeI CTAG 3 cut(s) 413, 764, 1128
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 3 cut(s) 244, 961, 1094
MalI GATC 8 cut(s) 115, 443, 458, 508, 999, 1110, 1244, 1323
MboI GATC 8 cut(s) 113, 441, 456, 506, 997, 1108, 1242, 1321
MboII GAAGA 7 cut(s) 42, 451, 608, 1058, 1178, 1235, 1328
MflI RGATCY 2 cut(s) 441, 456
MhlI GDGCHC 3 cut(s) 1078, 1105, 1145
MluCI AATT 9 cut(s) 45, 138, 359, 471, 655, 837, 1025, 1122, 1156
MlyI GAGTC 3 cut(s) 87, 650, 1145
MmeI TCCRAC 4 cut(s) 102, 142, 1170, 1325
MroXI GAANNNNTTC 1 cut(s) 1123
MseI TTAA 5 cut(s) 44, 581, 609, 863, 1023
MslI CAYNNNNRTG 2 cut(s) 495, 1259
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 3 cut(s) 15, 109, 255
MspR9I CCNGG 3 cut(s) 328, 504, 1331
Mva1269I GAATGC 1 cut(s) 1175
MvaI CCWGG 3 cut(s) 328, 504, 1331
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 4 cut(s) 118, 311, 645, 988
NdeI CATATG 1 cut(s) 958
NdeII GATC 8 cut(s) 113, 441, 456, 506, 997, 1108, 1242, 1321
NheI GCTAGC 1 cut(s) 763
NlaIV GGNNCC 2 cut(s) 19, 793
NmuCI GTSAC 2 cut(s) 244, 1094
NspI RCATGY 3 cut(s) 693, 789, 1058
NspV TTCGAA 2 cut(s) 136, 338
PaeI GCATGC 1 cut(s) 693
PceI AGGCCT 1 cut(s) 591
PciI ACATGT 1 cut(s) 785
PctI GAATGC 1 cut(s) 1175
PdmI GAANNNNTTC 1 cut(s) 1123
PfeI GAWTC 4 cut(s) 340, 544, 719, 1334
PfoI TCCNGGA 2 cut(s) 502, 1329
PinAI ACCGGT 1 cut(s) 254
PkrI GCNGC 4 cut(s) 71, 170, 333, 484
PleI GAGTC 3 cut(s) 87, 649, 1145
PpsI GAGTC 3 cut(s) 87, 649, 1145
PscI ACATGT 1 cut(s) 785
Psp1406I AACGTT 1 cut(s) 577
Psp6I CCWGG 3 cut(s) 326, 502, 1329
PspGI CCWGG 3 cut(s) 326, 502, 1329
PspN4I GGNNCC 2 cut(s) 19, 793
PstI CTGCAG 1 cut(s) 92
PsuI RGATCY 2 cut(s) 441, 456
PvuII CAGCTG 1 cut(s) 478
RsaI GTAC 1 cut(s) 772
RsaNI GTAC 1 cut(s) 771
RseI CAYNNNNRTG 2 cut(s) 495, 1259
SaqAI TTAA 5 cut(s) 44, 581, 609, 863, 1023
SatI GCNGC 4 cut(s) 70, 169, 332, 483
Sau3AI GATC 8 cut(s) 113, 441, 456, 506, 997, 1108, 1242, 1321
ScaI AGTACT 1 cut(s) 772
SchI GAGTC 3 cut(s) 87, 650, 1145
ScrFI CCNGG 3 cut(s) 328, 504, 1331
SduI GDGCHC 3 cut(s) 1078, 1105, 1145
SfaNI GCATC 4 cut(s) 56, 673, 978, 1360
SfcI CTRYAG 2 cut(s) 38, 88
SfuI TTCGAA 2 cut(s) 136, 338
SmiMI CAYNNNNRTG 2 cut(s) 495, 1259
SmlI CTYRAG 2 cut(s) 668, 1085
SmoI CTYRAG 2 cut(s) 668, 1085
SphI GCATGC 1 cut(s) 693
Sse9I AATT 9 cut(s) 45, 138, 359, 471, 655, 837, 1025, 1122, 1156
SseBI AGGCCT 1 cut(s) 591
SsiI CCGC 4 cut(s) 70, 119, 216, 482
SspMI CTAG 3 cut(s) 413, 764, 1128
StuI AGGCCT 1 cut(s) 591
StyD4I CCNGG 3 cut(s) 326, 502, 1329
TaaI ACNGT 3 cut(s) 42, 1100, 1229
TaiI ACGT 1 cut(s) 580
TaqI TCGA 3 cut(s) 136, 338, 386
TasI AATT 9 cut(s) 45, 138, 359, 471, 655, 837, 1025, 1122, 1156
TatI WGTACW 1 cut(s) 770
TauI GCSGC 2 cut(s) 72, 485
TfiI GAWTC 4 cut(s) 340, 544, 719, 1334
Tru1I TTAA 5 cut(s) 44, 581, 609, 863, 1023
Tru9I TTAA 5 cut(s) 44, 581, 609, 863, 1023
TscAI CASTG 2 cut(s) 13, 370
TseFI GTSAC 2 cut(s) 244, 1094
TseI GCWGC 2 cut(s) 168, 331
Tsp45I GTSAC 2 cut(s) 244, 1094
TspDTI ATGAA 5 cut(s) 17, 531, 552, 1277, 1374
TspGWI ACGGA 2 cut(s) 88, 232
TspRI CASTG 2 cut(s) 13, 370
XapI RAATTY 4 cut(s) 138, 359, 1025, 1156
XceI RCATGY 3 cut(s) 693, 789, 1058
XmiI GTMKAC 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 1123
XspI CTAG 3 cut(s) 413, 764, 1128
ZrmI AGTACT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.