No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G60460 AT1G60460 AT1G60460 AT1G60460 AT1G60460 |
| fragaria_vesca | FvH4_4g34180 FvH4_4g34230 FvH4_4g34230 FvH4_4g34230 |
| malus_domestica | MD16G1094900.v1.1 |
| prunus_persica | Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1 |
| pyrus_communis | pycom16g08070 |
| rosa_chinensis | RchiOBHm_Chr4g0443681 RchiOBHm_Chr4g0443691 RchiOBHm_Chr7g0214331 |
| rosa_laevigata | RLG00000005902 |
| rosa_multiflora | Rmu_sc0001426.1_g000015 Rmu_sc0001426.1_g000016 |
| rosa_roxburghii | Rroxscaffold_5G00384230 |
| rosa_samantha | Rh4AG406200 Rh4BG417200 Rh4CG431700 Rh4DG412800 |
| rosa_wichuraiana | Rw4G034880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 37 |
| AccII | CGCG | 1 cut(s) | 72 |
| AciI | CCGC | 4 cut(s) | 70, 119, 216, 482 |
| AclI | AACGTT | 1 cut(s) | 577 |
| AclWI | GGATC | 3 cut(s) | 436, 451, 514 |
| AcsI | RAATTY | 4 cut(s) | 138, 359, 1025, 1156 |
| AcuI | CTGAAG | 1 cut(s) | 393 |
| AfaI | GTAC | 1 cut(s) | 772 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 350, 1199 |
| AflIII | ACRYGT | 1 cut(s) | 785 |
| AgeI | ACCGGT | 1 cut(s) | 254 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 98 |
| AjnI | CCWGG | 3 cut(s) | 326, 502, 1329 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 28 |
| AluBI | AGCT | 8 cut(s) | 31, 168, 188, 196, 478, 563, 734, 763 |
| AluI | AGCT | 8 cut(s) | 31, 168, 188, 196, 478, 563, 734, 763 |
| Alw21I | GWGCWC | 1 cut(s) | 1145 |
| Alw26I | GTCTC | 1 cut(s) | 1347 |
| AlwI | GGATC | 3 cut(s) | 436, 451, 514 |
| AoxI | GGCC | 2 cut(s) | 415, 589 |
| ApeKI | GCWGC | 2 cut(s) | 168, 331 |
| ApoI | RAATTY | 4 cut(s) | 138, 359, 1025, 1156 |
| AsiGI | ACCGGT | 1 cut(s) | 254 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1123 |
| AspLEI | GCGC | 1 cut(s) | 74 |
| AsuHPI | GGTGA | 4 cut(s) | 230, 275, 819, 1376 |
| AsuII | TTCGAA | 2 cut(s) | 136, 338 |
| AsuNHI | GCTAGC | 1 cut(s) | 763 |
| AxyI | CCTNAGG | 1 cut(s) | 779 |
| BaeGI | GKGCMC | 2 cut(s) | 1078, 1105 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 144, 177 |
| BbsI | GAAGAC | 2 cut(s) | 603, 1230 |
| Bbv12I | GWGCWC | 1 cut(s) | 1145 |
| BbvI | GCAGC | 2 cut(s) | 155, 318 |
| BccI | CCATC | 2 cut(s) | 224, 979 |
| BceAI | ACGGC | 1 cut(s) | 690 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1152, 1186 |
| BciT130I | CCWGG | 3 cut(s) | 328, 504, 1331 |
| BciVI | GTATCC | 1 cut(s) | 145 |
| BclI | TGATCA | 2 cut(s) | 997, 1321 |
| BcoDI | GTCTC | 1 cut(s) | 1347 |
| BfaI | CTAG | 3 cut(s) | 413, 764, 1128 |
| BfmI | CTRYAG | 2 cut(s) | 38, 88 |
| BfuI | GTATCC | 1 cut(s) | 145 |
| BisI | GCNGC | 4 cut(s) | 70, 169, 332, 483 |
| BlpI | GCTNAGC | 1 cut(s) | 486 |
| BlsI | GCNGC | 4 cut(s) | 71, 170, 333, 484 |
| BmcAI | AGTACT | 1 cut(s) | 772 |
| Bme1390I | CCNGG | 3 cut(s) | 328, 504, 1331 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 98 |
| BmiI | GGNNCC | 2 cut(s) | 19, 793 |
| BmrFI | CCNGG | 3 cut(s) | 328, 504, 1331 |
| BmsI | GCATC | 4 cut(s) | 56, 673, 978, 1360 |
| BmtI | GCTAGC | 1 cut(s) | 767 |
| BpiI | GAAGAC | 2 cut(s) | 603, 1230 |
| BpmI | CTGGAG | 2 cut(s) | 702, 1080 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 486 |
| Bpu14I | TTCGAA | 2 cut(s) | 136, 338 |
| BpuEI | CTTGAG | 2 cut(s) | 653, 1070 |
| BsaI | GGTCTC | 1 cut(s) | 1347 |
| BsaWI | WCCGGW | 2 cut(s) | 14, 254 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 894, 924 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 350, 1199 |
| Bse118I | RCCGGY | 1 cut(s) | 254 |
| Bse1I | ACTGG | 3 cut(s) | 160, 685, 881 |
| Bse21I | CCTNAGG | 1 cut(s) | 779 |
| BseBI | CCWGG | 3 cut(s) | 328, 504, 1331 |
| BseGI | GGATG | 3 cut(s) | 235, 502, 1375 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 350, 1199 |
| BseMII | CTCAG | 3 cut(s) | 477, 573, 770 |
| BseNI | ACTGG | 3 cut(s) | 160, 685, 881 |
| BseRI | GAGGAG | 1 cut(s) | 191 |
| BseSI | GKGCMC | 2 cut(s) | 1078, 1105 |
| BseXI | GCAGC | 2 cut(s) | 155, 318 |
| Bsh1236I | CGCG | 1 cut(s) | 72 |
| BshFI | GGCC | 2 cut(s) | 417, 591 |
| BshTI | ACCGGT | 1 cut(s) | 254 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1145 |
| BsiSI | CCGG | 3 cut(s) | 15, 109, 255 |
| BslFI | GGGAC | 2 cut(s) | 382, 691 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 350, 1199 |
| BsmAI | GTCTC | 1 cut(s) | 1347 |
| BsmFI | GGGAC | 2 cut(s) | 382, 691 |
| BsmI | GAATGC | 1 cut(s) | 1175 |
| BsnI | GGCC | 2 cut(s) | 417, 591 |
| Bso31I | GGTCTC | 1 cut(s) | 1347 |
| Bsp119I | TTCGAA | 2 cut(s) | 136, 338 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1078, 1105, 1145 |
| Bsp143I | GATC | 8 cut(s) | 113, 441, 456, 506, 997, 1108, 1242, 1321 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 486 |
| BspACI | CCGC | 4 cut(s) | 70, 119, 216, 482 |
| BspANI | GGCC | 2 cut(s) | 417, 591 |
| BspCNI | CTCAG | 3 cut(s) | 478, 572, 771 |
| BspFNI | CGCG | 1 cut(s) | 72 |
| BspLI | GGNNCC | 2 cut(s) | 19, 793 |
| BspMAI | CTGCAG | 1 cut(s) | 92 |
| BspOI | GCTAGC | 1 cut(s) | 767 |
| BspPI | GGATC | 3 cut(s) | 436, 451, 514 |
| BspT104I | TTCGAA | 2 cut(s) | 136, 338 |
| BspTNI | GGTCTC | 1 cut(s) | 1347 |
| BsrFI | RCCGGY | 1 cut(s) | 254 |
| BsrI | ACTGG | 3 cut(s) | 160, 685, 881 |
| BssAI | RCCGGY | 1 cut(s) | 254 |
| BssMI | GATC | 8 cut(s) | 113, 441, 456, 506, 997, 1108, 1242, 1321 |
| Bst2UI | CCWGG | 3 cut(s) | 328, 504, 1331 |
| Bst4CI | ACNGT | 3 cut(s) | 42, 1100, 1229 |
| BstBI | TTCGAA | 2 cut(s) | 136, 338 |
| BstC8I | GCNNGC | 3 cut(s) | 480, 691, 765 |
| BstDEI | CTNAG | 5 cut(s) | 345, 486, 559, 779, 1070 |
| BstF5I | GGATG | 3 cut(s) | 235, 502, 1375 |
| BstFNI | CGCG | 1 cut(s) | 72 |
| BstHHI | GCGC | 1 cut(s) | 74 |
| BstKTI | GATC | 8 cut(s) | 116, 444, 459, 509, 1000, 1111, 1245, 1324 |
| BstMAI | GTCTC | 1 cut(s) | 1347 |
| BstMBI | GATC | 8 cut(s) | 113, 441, 456, 506, 997, 1108, 1242, 1321 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 118, 311, 645, 988 |
| BstNI | CCWGG | 3 cut(s) | 328, 504, 1331 |
| BstNSI | RCATGY | 3 cut(s) | 693, 789, 1058 |
| BstSCI | CCNGG | 3 cut(s) | 326, 502, 1329 |
| BstSFI | CTRYAG | 2 cut(s) | 38, 88 |
| BstSLI | GKGCMC | 2 cut(s) | 1078, 1105 |
| BstUI | CGCG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 2 cut(s) | 155, 318 |
| BstV2I | GAAGAC | 2 cut(s) | 603, 1230 |
| BstX2I | RGATCY | 2 cut(s) | 441, 456 |
| BstYI | RGATCY | 2 cut(s) | 441, 456 |
| Bsu36I | CCTNAGG | 1 cut(s) | 779 |
| BsuI | GTATCC | 1 cut(s) | 145 |
| BsuRI | GGCC | 2 cut(s) | 417, 591 |
| BtgZI | GCGATG | 1 cut(s) | 79 |
| BtsCI | GGATG | 3 cut(s) | 235, 502, 1375 |
| BtsI | GCAGTG | 1 cut(s) | 6 |
| BtsIMutI | CAGTG | 2 cut(s) | 6, 370 |
| Cac8I | GCNNGC | 3 cut(s) | 480, 691, 765 |
| CfoI | GCGC | 1 cut(s) | 74 |
| Cfr10I | RCCGGY | 1 cut(s) | 254 |
| Csp6I | GTAC | 1 cut(s) | 771 |
| CspAI | ACCGGT | 1 cut(s) | 254 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 241, 276 |
| CviQI | GTAC | 1 cut(s) | 771 |
| DdeI | CTNAG | 5 cut(s) | 345, 486, 559, 779, 1070 |
| DpnI | GATC | 8 cut(s) | 115, 443, 458, 508, 999, 1110, 1244, 1323 |
| DpnII | GATC | 8 cut(s) | 113, 441, 456, 506, 997, 1108, 1242, 1321 |
| DraI | TTTAAA | 1 cut(s) | 582 |
| DriI | GACNNNNNGTC | 1 cut(s) | 98 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 98 |
| EciI | GGCGGA | 1 cut(s) | 108 |
| Eco147I | AGGCCT | 1 cut(s) | 591 |
| Eco31I | GGTCTC | 1 cut(s) | 1347 |
| Eco57I | CTGAAG | 1 cut(s) | 393 |
| Eco81I | CCTNAGG | 1 cut(s) | 779 |
| EcoRII | CCWGG | 3 cut(s) | 326, 502, 1329 |
| FaqI | GGGAC | 2 cut(s) | 382, 691 |
| FauNDI | CATATG | 1 cut(s) | 958 |
| FbaI | TGATCA | 2 cut(s) | 997, 1321 |
| FblI | GTMKAC | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 4 cut(s) | 70, 169, 332, 483 |
| FokI | GGATG | 3 cut(s) | 242, 509, 1382 |
| Fsp4HI | GCNGC | 4 cut(s) | 70, 169, 332, 483 |
| FspBI | CTAG | 3 cut(s) | 413, 764, 1128 |
| GlaI | GCGC | 1 cut(s) | 73 |
| GluI | GCNGC | 4 cut(s) | 70, 169, 332, 483 |
| GsuI | CTGGAG | 2 cut(s) | 702, 1080 |
| HaeIII | GGCC | 2 cut(s) | 417, 591 |
| HapII | CCGG | 3 cut(s) | 15, 109, 255 |
| HhaI | GCGC | 1 cut(s) | 74 |
| Hin6I | GCGC | 1 cut(s) | 72 |
| HinP1I | GCGC | 1 cut(s) | 72 |
| HincII | GTYRAC | 1 cut(s) | 324 |
| HindII | GTYRAC | 1 cut(s) | 324 |
| HindIII | AAGCTT | 2 cut(s) | 186, 194 |
| HinfI | GANTC | 7 cut(s) | 93, 340, 544, 641, 719, 1151, 1334 |
| HpaII | CCGG | 3 cut(s) | 15, 109, 255 |
| HphI | GGTGA | 4 cut(s) | 230, 275, 819, 1376 |
| Hpy166II | GTNNAC | 4 cut(s) | 38, 324, 1190, 1214 |
| Hpy188I | TCNGA | 6 cut(s) | 79, 151, 438, 718, 760, 1163 |
| Hpy188III | TCNNGA | 4 cut(s) | 26, 510, 572, 1094 |
| Hpy8I | GTNNAC | 4 cut(s) | 38, 324, 1190, 1214 |
| Hpy99I | CGWCG | 2 cut(s) | 83, 104 |
| HpyAV | CCTTC | 7 cut(s) | 32, 132, 312, 345, 850, 1039, 1355 |
| HpyCH4III | ACNGT | 3 cut(s) | 42, 1100, 1229 |
| HpyCH4IV | ACGT | 1 cut(s) | 577 |
| HpyCH4V | TGCA | 8 cut(s) | 56, 90, 201, 470, 929, 991, 1031, 1115 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 118, 311, 645, 988 |
| HpyF3I | CTNAG | 5 cut(s) | 345, 486, 559, 779, 1070 |
| HpySE526I | ACGT | 1 cut(s) | 577 |
| HspAI | GCGC | 1 cut(s) | 72 |
| Ksp22I | TGATCA | 2 cut(s) | 997, 1321 |
| Kzo9I | GATC | 8 cut(s) | 113, 441, 456, 506, 997, 1108, 1242, 1321 |
| LmnI | GCTCC | 4 cut(s) | 661, 797, 913, 1148 |
| Lsp1109I | GCAGC | 2 cut(s) | 155, 318 |
| LweI | GCATC | 4 cut(s) | 56, 673, 978, 1360 |
| MaeI | CTAG | 3 cut(s) | 413, 764, 1128 |
| MaeII | ACGT | 1 cut(s) | 577 |
| MaeIII | GTNAC | 3 cut(s) | 244, 961, 1094 |
| MalI | GATC | 8 cut(s) | 115, 443, 458, 508, 999, 1110, 1244, 1323 |
| MboI | GATC | 8 cut(s) | 113, 441, 456, 506, 997, 1108, 1242, 1321 |
| MboII | GAAGA | 7 cut(s) | 42, 451, 608, 1058, 1178, 1235, 1328 |
| MflI | RGATCY | 2 cut(s) | 441, 456 |
| MhlI | GDGCHC | 3 cut(s) | 1078, 1105, 1145 |
| MluCI | AATT | 9 cut(s) | 45, 138, 359, 471, 655, 837, 1025, 1122, 1156 |
| MlyI | GAGTC | 3 cut(s) | 87, 650, 1145 |
| MmeI | TCCRAC | 4 cut(s) | 102, 142, 1170, 1325 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1123 |
| MseI | TTAA | 5 cut(s) | 44, 581, 609, 863, 1023 |
| MslI | CAYNNNNRTG | 2 cut(s) | 495, 1259 |
| MspA1I | CMGCKG | 1 cut(s) | 478 |
| MspI | CCGG | 3 cut(s) | 15, 109, 255 |
| MspR9I | CCNGG | 3 cut(s) | 328, 504, 1331 |
| Mva1269I | GAATGC | 1 cut(s) | 1175 |
| MvaI | CCWGG | 3 cut(s) | 328, 504, 1331 |
| MvnI | CGCG | 1 cut(s) | 72 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 118, 311, 645, 988 |
| NdeI | CATATG | 1 cut(s) | 958 |
| NdeII | GATC | 8 cut(s) | 113, 441, 456, 506, 997, 1108, 1242, 1321 |
| NheI | GCTAGC | 1 cut(s) | 763 |
| NlaIV | GGNNCC | 2 cut(s) | 19, 793 |
| NmuCI | GTSAC | 2 cut(s) | 244, 1094 |
| NspI | RCATGY | 3 cut(s) | 693, 789, 1058 |
| NspV | TTCGAA | 2 cut(s) | 136, 338 |
| PaeI | GCATGC | 1 cut(s) | 693 |
| PceI | AGGCCT | 1 cut(s) | 591 |
| PciI | ACATGT | 1 cut(s) | 785 |
| PctI | GAATGC | 1 cut(s) | 1175 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1123 |
| PfeI | GAWTC | 4 cut(s) | 340, 544, 719, 1334 |
| PfoI | TCCNGGA | 2 cut(s) | 502, 1329 |
| PinAI | ACCGGT | 1 cut(s) | 254 |
| PkrI | GCNGC | 4 cut(s) | 71, 170, 333, 484 |
| PleI | GAGTC | 3 cut(s) | 87, 649, 1145 |
| PpsI | GAGTC | 3 cut(s) | 87, 649, 1145 |
| PscI | ACATGT | 1 cut(s) | 785 |
| Psp1406I | AACGTT | 1 cut(s) | 577 |
| Psp6I | CCWGG | 3 cut(s) | 326, 502, 1329 |
| PspGI | CCWGG | 3 cut(s) | 326, 502, 1329 |
| PspN4I | GGNNCC | 2 cut(s) | 19, 793 |
| PstI | CTGCAG | 1 cut(s) | 92 |
| PsuI | RGATCY | 2 cut(s) | 441, 456 |
| PvuII | CAGCTG | 1 cut(s) | 478 |
| RsaI | GTAC | 1 cut(s) | 772 |
| RsaNI | GTAC | 1 cut(s) | 771 |
| RseI | CAYNNNNRTG | 2 cut(s) | 495, 1259 |
| SaqAI | TTAA | 5 cut(s) | 44, 581, 609, 863, 1023 |
| SatI | GCNGC | 4 cut(s) | 70, 169, 332, 483 |
| Sau3AI | GATC | 8 cut(s) | 113, 441, 456, 506, 997, 1108, 1242, 1321 |
| ScaI | AGTACT | 1 cut(s) | 772 |
| SchI | GAGTC | 3 cut(s) | 87, 650, 1145 |
| ScrFI | CCNGG | 3 cut(s) | 328, 504, 1331 |
| SduI | GDGCHC | 3 cut(s) | 1078, 1105, 1145 |
| SfaNI | GCATC | 4 cut(s) | 56, 673, 978, 1360 |
| SfcI | CTRYAG | 2 cut(s) | 38, 88 |
| SfuI | TTCGAA | 2 cut(s) | 136, 338 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 495, 1259 |
| SmlI | CTYRAG | 2 cut(s) | 668, 1085 |
| SmoI | CTYRAG | 2 cut(s) | 668, 1085 |
| SphI | GCATGC | 1 cut(s) | 693 |
| Sse9I | AATT | 9 cut(s) | 45, 138, 359, 471, 655, 837, 1025, 1122, 1156 |
| SseBI | AGGCCT | 1 cut(s) | 591 |
| SsiI | CCGC | 4 cut(s) | 70, 119, 216, 482 |
| SspMI | CTAG | 3 cut(s) | 413, 764, 1128 |
| StuI | AGGCCT | 1 cut(s) | 591 |
| StyD4I | CCNGG | 3 cut(s) | 326, 502, 1329 |
| TaaI | ACNGT | 3 cut(s) | 42, 1100, 1229 |
| TaiI | ACGT | 1 cut(s) | 580 |
| TaqI | TCGA | 3 cut(s) | 136, 338, 386 |
| TasI | AATT | 9 cut(s) | 45, 138, 359, 471, 655, 837, 1025, 1122, 1156 |
| TatI | WGTACW | 1 cut(s) | 770 |
| TauI | GCSGC | 2 cut(s) | 72, 485 |
| TfiI | GAWTC | 4 cut(s) | 340, 544, 719, 1334 |
| Tru1I | TTAA | 5 cut(s) | 44, 581, 609, 863, 1023 |
| Tru9I | TTAA | 5 cut(s) | 44, 581, 609, 863, 1023 |
| TscAI | CASTG | 2 cut(s) | 13, 370 |
| TseFI | GTSAC | 2 cut(s) | 244, 1094 |
| TseI | GCWGC | 2 cut(s) | 168, 331 |
| Tsp45I | GTSAC | 2 cut(s) | 244, 1094 |
| TspDTI | ATGAA | 5 cut(s) | 17, 531, 552, 1277, 1374 |
| TspGWI | ACGGA | 2 cut(s) | 88, 232 |
| TspRI | CASTG | 2 cut(s) | 13, 370 |
| XapI | RAATTY | 4 cut(s) | 138, 359, 1025, 1156 |
| XceI | RCATGY | 3 cut(s) | 693, 789, 1058 |
| XmiI | GTMKAC | 1 cut(s) | 37 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1123 |
| XspI | CTAG | 3 cut(s) | 413, 764, 1128 |
| ZrmI | AGTACT | 1 cut(s) | 772 |