Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006786

Physical Location & Seq

Genomic Coordinates Reverse (-)

61813457 .. 61817514

Gene Structure 4058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G034880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAACATTGCTTCCAGTTCCCTTCCAGAGCTGTGTCTACAGTTAATTTCTTCTGCATTTCAACGATGCCGCGCTTCCGACGACCTCTGCAGACTCTCCGTCGTTCTCCGGCGATCTCCGCCTTCCAATCTCGTTCGAATTTCAGTTTCGGATACTGGTGTTGGAAGCTGCGTGGAGGAGTTTGAAGCTTTGAAGCTTTGCAGGGAGGCTTTTGGCGGTGAGATTTGGGATGGATTGCTTTCCGTCACAACCACCGGTTTTGGTGATAATGAGATATATCACTATGAGTTCAATCTAAAAGAGGCTGTGTCTGCCAGAAGGTTGACCAGGCTGCCTTCGAATCCTAAGAATGGGCAGAAATTCAGTGGGACTGAAGTATGTCTGTCGATTTTTGAAAGCGTTGATGTTTTGCTAGGAGAGATTAGTCGCTTCCTTCAGAAGATCCTCATTCTAAAGATCCCTAATGTTGCAATTCAGCTGGTGGCTGAGCATGGGGATGTTCCTGGATCACGATATGAAAGTGTTTTTCTGGCAAATGAATGGAATCCTTTACCTTTCTCAGCTTCAAATCTTGAACGTTTAAAGTCAGGCCTTGAAGACTATGTTTTTAAGCATGGAAATACATTAGGACAAAAATGCGAGTCATGCTTCTCAAATTGGGAGCATCTCAAGGTTGGGACTGGAGTAGCATGCCACACAGAAAGCCGTAGATATTCTGAATCAGCTATGGAAGCTGTGATTGTAATAAGTGAAATATCAGAGATAGCGAGTACTTGCCTGAGGACATGTGGCGCCAAAACAGAGGTTTTGTATTTCAAAGATTTCTCACCTTGCCCAATTTCCCAATCATCTGTGAAGGCATTAACAAGCATTGACTGGAAAAGTTATGGATTGACTTTTGGGGGCGTTGTGGAGCAGGGTGGCTATGCATTACTGAAATGGGATAACTTGCCACCATATGTTCAAATTGACATTTCCCTCCACCACTACCATAACCAATATCCAAAATTATGTCGGATGCTTAATTTTCTCAACATTAGTAAACTTTTCCCTGAAATGCTTTTTGTTATGGTTTGTATGAAATCTGACATGTTACATGCACATGGCATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000793 GO:0003006 GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007275 GO:0007276 GO:0008094 GO:0008150 GO:0008152 GO:0009553 GO:0009555 GO:0009561 GO:0009653 GO:0009790 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030674 GO:0032501 GO:0032502 GO:0032504 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048314 GO:0048598 GO:0048609 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055046 GO:0060090 GO:0061505 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0140013 GO:0140097 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

41.36

Weight (kDa)

6.09

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60460 AT1G60460 AT1G60460 AT1G60460 AT1G60460
fragaria_vesca	FvH4_4g34180 FvH4_4g34230 FvH4_4g34230 FvH4_4g34230
malus_domestica	MD16G1094900.v1.1
prunus_persica	Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1
pyrus_communis	pycom16g08070
rosa_chinensis	RchiOBHm_Chr4g0443681 RchiOBHm_Chr4g0443691 RchiOBHm_Chr7g0214331
rosa_laevigata	RLG00000005902
rosa_multiflora	Rmu_sc0001426.1_g000015 Rmu_sc0001426.1_g000016
rosa_roxburghii	Rroxscaffold_5G00384230
rosa_samantha	Rh4AG406200 Rh4BG417200 Rh4CG431700 Rh4DG412800
rosa_wichuraiana	Rw4G034880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	70, 119, 216
AclI	AACGTT	1 cut(s)	577
AclWI	GGATC	3 cut(s)	436, 451, 514
AcsI	RAATTY	2 cut(s)	138, 359
AcuI	CTGAAG	2 cut(s)	393, 419
AcyI	GRCGYC	1 cut(s)	792
AfaI	GTAC	1 cut(s)	772
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	2 cut(s)	785, 1089
AgeI	ACCGGT	1 cut(s)	254
AhdI	GACNNNNNGTC	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	326, 502
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	8 cut(s)	31, 168, 188, 196, 478, 563, 725, 734
AluI	AGCT	8 cut(s)	31, 168, 188, 196, 478, 563, 725, 734
AlwI	GGATC	3 cut(s)	436, 451, 514
AoxI	GGCC	1 cut(s)	589
ApeKI	GCWGC	2 cut(s)	168, 331
ApoI	RAATTY	2 cut(s)	138, 359
AsiGI	ACCGGT	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	74, 794
AsuHPI	GGTGA	3 cut(s)	230, 275, 819
AsuII	TTCGAA	2 cut(s)	136, 338
AxyI	CCTNAGG	1 cut(s)	779
BaeI	ACNNNNGTAYC	2 cut(s)	144, 177
BanI	GGYRCC	1 cut(s)	791
BbsI	GAAGAC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	155, 318
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	690
BciT130I	CCWGG	2 cut(s)	328, 504
BciVI	GTATCC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	2 cut(s)	38, 88
BfoI	RGCGCY	1 cut(s)	795
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	3 cut(s)	70, 169, 332
BlpI	GCTNAGC	1 cut(s)	486
BlsI	GCNGC	3 cut(s)	71, 170, 333
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	2 cut(s)	328, 504
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	793
BmrFI	CCNGG	2 cut(s)	328, 504
BmsI	GCATC	3 cut(s)	56, 673, 1008
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	702
Bpu1102I	GCTNAGC	1 cut(s)	486
Bpu14I	TTCGAA	2 cut(s)	136, 338
BpuEI	CTTGAG	1 cut(s)	653
BsaHI	GRCGYC	1 cut(s)	792
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	4 cut(s)	15, 160, 685, 881
Bse21I	CCTNAGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	6
BseBI	CCWGG	2 cut(s)	328, 504
BseGI	GGATG	3 cut(s)	235, 502, 1023
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	3 cut(s)	477, 573, 770
BseNI	ACTGG	4 cut(s)	15, 160, 685, 881
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	155, 318
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	591
BshNI	GGYRCC	1 cut(s)	791
BshTI	ACCGGT	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	109, 255
BslFI	GGGAC	2 cut(s)	382, 691
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmFI	GGGAC	2 cut(s)	382, 691
BsmI	GAATGC	1 cut(s)	1107
BsnI	GGCC	1 cut(s)	591
Bsp119I	TTCGAA	2 cut(s)	136, 338
Bsp143I	GATC	4 cut(s)	113, 441, 456, 506
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	3 cut(s)	70, 119, 216
BspANI	GGCC	1 cut(s)	591
BspCNI	CTCAG	3 cut(s)	478, 572, 771
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	793
BspMAI	CTGCAG	1 cut(s)	92
BspPI	GGATC	3 cut(s)	436, 451, 514
BspT104I	TTCGAA	2 cut(s)	136, 338
BspT107I	GGYRCC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	4 cut(s)	15, 160, 685, 881
BssAI	RCCGGY	1 cut(s)	254
BssMI	GATC	4 cut(s)	113, 441, 456, 506
BssNI	GRCGYC	1 cut(s)	792
Bst2UI	CCWGG	2 cut(s)	328, 504
Bst4CI	ACNGT	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	792
BstBI	TTCGAA	2 cut(s)	136, 338
BstC8I	GCNNGC	1 cut(s)	691
BstDEI	CTNAG	4 cut(s)	345, 486, 559, 779
BstF5I	GGATG	3 cut(s)	235, 502, 1023
BstFNI	CGCG	1 cut(s)	72
BstH2I	RGCGCY	1 cut(s)	795
BstHHI	GCGC	2 cut(s)	74, 794
BstKTI	GATC	4 cut(s)	116, 444, 459, 509
BstMBI	GATC	4 cut(s)	113, 441, 456, 506
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 311, 645, 731
BstNI	CCWGG	2 cut(s)	328, 504
BstNSI	RCATGY	4 cut(s)	693, 789, 1093, 1100
BstSCI	CCNGG	2 cut(s)	326, 502
BstSFI	CTRYAG	2 cut(s)	38, 88
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	155, 318
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	2 cut(s)	441, 456
BstYI	RGATCY	2 cut(s)	441, 456
Bsu36I	CCTNAGG	1 cut(s)	779
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	235, 502, 1023
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	691
CfoI	GCGC	2 cut(s)	74, 794
Cfr10I	RCCGGY	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	771
CspAI	ACCGGT	1 cut(s)	254
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	8 cut(s)	491, 614, 645, 690, 786, 1090, 1097, 1103
CviQI	GTAC	1 cut(s)	771
DdeI	CTNAG	4 cut(s)	345, 486, 559, 779
DinI	GGCGCC	1 cut(s)	793
DpnI	GATC	4 cut(s)	115, 443, 458, 508
DpnII	GATC	4 cut(s)	113, 441, 456, 506
DraI	TTTAAA	1 cut(s)	582
DriI	GACNNNNNGTC	1 cut(s)	98
Eam1105I	GACNNNNNGTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	591
Eco57I	CTGAAG	2 cut(s)	393, 419
Eco81I	CCTNAGG	1 cut(s)	779
EcoRII	CCWGG	2 cut(s)	326, 502
EcoT22I	ATGCAT	1 cut(s)	931
EgeI	GGCGCC	1 cut(s)	793
EheI	GGCGCC	1 cut(s)	793
FaeI	CATG	8 cut(s)	494, 617, 648, 693, 789, 1093, 1100, 1106
FaqI	GGGAC	2 cut(s)	382, 691
FatI	CATG	8 cut(s)	490, 613, 644, 689, 785, 1089, 1096, 1102
FauNDI	CATATG	1 cut(s)	958
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	70, 169, 332
FokI	GGATG	3 cut(s)	242, 509, 1030
Fsp4HI	GCNGC	3 cut(s)	70, 169, 332
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	2 cut(s)	73, 793
GluI	GCNGC	3 cut(s)	70, 169, 332
GsuI	CTGGAG	1 cut(s)	702
HaeII	RGCGCY	1 cut(s)	795
HaeIII	GGCC	1 cut(s)	591
HapII	CCGG	2 cut(s)	109, 255
HhaI	GCGC	2 cut(s)	74, 794
Hin1I	GRCGYC	1 cut(s)	792
Hin1II	CATG	8 cut(s)	494, 617, 648, 693, 789, 1093, 1100, 1106
Hin6I	GCGC	2 cut(s)	72, 792
HinP1I	GCGC	2 cut(s)	72, 792
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	2 cut(s)	186, 194
HinfI	GANTC	5 cut(s)	93, 340, 544, 641, 719
HpaII	CCGG	2 cut(s)	109, 255
HphI	GGTGA	3 cut(s)	230, 275, 819
Hpy166II	GTNNAC	3 cut(s)	38, 324, 1043
Hpy188I	TCNGA	7 cut(s)	79, 151, 438, 718, 760, 1017, 1087
Hpy188III	TCNNGA	3 cut(s)	26, 510, 572
Hpy8I	GTNNAC	3 cut(s)	38, 324, 1043
Hpy99I	CGWCG	2 cut(s)	83, 104
HpyAV	CCTTC	6 cut(s)	32, 132, 312, 345, 443, 850
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	6 cut(s)	56, 90, 201, 470, 929, 1100
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 311, 645, 731
HpyF3I	CTNAG	4 cut(s)	345, 486, 559, 779
HpySE526I	ACGT	1 cut(s)	577
Hsp92I	GRCGYC	1 cut(s)	792
Hsp92II	CATG	8 cut(s)	494, 617, 648, 693, 789, 1093, 1100, 1106
HspAI	GCGC	2 cut(s)	72, 792
KasI	GGCGCC	1 cut(s)	791
Kzo9I	GATC	4 cut(s)	113, 441, 456, 506
LmnI	GCTCC	2 cut(s)	661, 913
Lsp1109I	GCAGC	2 cut(s)	155, 318
LweI	GCATC	3 cut(s)	56, 673, 1008
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	2 cut(s)	244, 1092
MalI	GATC	4 cut(s)	115, 443, 458, 508
MboI	GATC	4 cut(s)	113, 441, 456, 506
MboII	GAAGA	3 cut(s)	42, 451, 608
MflI	RGATCY	2 cut(s)	441, 456
MluCI	AATT	9 cut(s)	45, 138, 359, 471, 655, 837, 966, 1007, 1024
Mly113I	GGCGCC	1 cut(s)	792
MlyI	GAGTC	2 cut(s)	87, 650
MmeI	TCCRAC	3 cut(s)	102, 142, 995
MnlI	CCTC	8 cut(s)	95, 169, 199, 295, 455, 774, 796, 989
Mph1103I	ATGCAT	1 cut(s)	931
MseI	TTAA	5 cut(s)	44, 581, 609, 863, 1023
MslI	CAYNNNNRTG	2 cut(s)	495, 1101
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	2 cut(s)	109, 255
MspR9I	CCNGG	2 cut(s)	328, 504
Mva1269I	GAATGC	1 cut(s)	1107
MvaI	CCWGG	2 cut(s)	328, 504
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	4 cut(s)	118, 311, 645, 731
NarI	GGCGCC	1 cut(s)	792
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	4 cut(s)	113, 441, 456, 506
NlaIII	CATG	8 cut(s)	494, 617, 648, 693, 789, 1093, 1100, 1106
NlaIV	GGNNCC	1 cut(s)	793
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	931
NspI	RCATGY	4 cut(s)	693, 789, 1093, 1100
NspV	TTCGAA	2 cut(s)	136, 338
PaeI	GCATGC	1 cut(s)	693
PceI	AGGCCT	1 cut(s)	591
PciI	ACATGT	2 cut(s)	785, 1089
PctI	GAATGC	1 cut(s)	1107
PfeI	GAWTC	3 cut(s)	340, 544, 719
PfoI	TCCNGGA	1 cut(s)	502
PinAI	ACCGGT	1 cut(s)	254
PkrI	GCNGC	3 cut(s)	71, 170, 333
PleI	GAGTC	2 cut(s)	87, 649
PluTI	GGCGCC	1 cut(s)	795
PpsI	GAGTC	2 cut(s)	87, 649
PscI	ACATGT	2 cut(s)	785, 1089
Psp1406I	AACGTT	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	326, 502
PspGI	CCWGG	2 cut(s)	326, 502
PspN4I	GGNNCC	1 cut(s)	793
PstI	CTGCAG	1 cut(s)	92
PsuI	RGATCY	2 cut(s)	441, 456
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	1 cut(s)	772
RsaNI	GTAC	1 cut(s)	771
RseI	CAYNNNNRTG	2 cut(s)	495, 1101
SaqAI	TTAA	5 cut(s)	44, 581, 609, 863, 1023
SatI	GCNGC	3 cut(s)	70, 169, 332
Sau3AI	GATC	4 cut(s)	113, 441, 456, 506
ScaI	AGTACT	1 cut(s)	772
SchI	GAGTC	2 cut(s)	87, 650
ScrFI	CCNGG	2 cut(s)	328, 504
SfaNI	GCATC	3 cut(s)	56, 673, 1008
SfcI	CTRYAG	2 cut(s)	38, 88
SfoI	GGCGCC	1 cut(s)	793
SfuI	TTCGAA	2 cut(s)	136, 338
SmiMI	CAYNNNNRTG	2 cut(s)	495, 1101
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SphI	GCATGC	1 cut(s)	693
Sse9I	AATT	9 cut(s)	45, 138, 359, 471, 655, 837, 966, 1007, 1024
SseBI	AGGCCT	1 cut(s)	591
SsiI	CCGC	3 cut(s)	70, 119, 216
SspDI	GGCGCC	1 cut(s)	791
SspMI	CTAG	1 cut(s)	413
StuI	AGGCCT	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	326, 502
TaaI	ACNGT	1 cut(s)	42
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	3 cut(s)	136, 338, 386
TasI	AATT	9 cut(s)	45, 138, 359, 471, 655, 837, 966, 1007, 1024
TatI	WGTACW	1 cut(s)	770
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	340, 544, 719
Tru1I	TTAA	5 cut(s)	44, 581, 609, 863, 1023
Tru9I	TTAA	5 cut(s)	44, 581, 609, 863, 1023
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	2 cut(s)	168, 331
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	17, 531, 552, 1094
TspGWI	ACGGA	2 cut(s)	88, 232
TspRI	CASTG	1 cut(s)	370
XapI	RAATTY	2 cut(s)	138, 359
XceI	RCATGY	4 cut(s)	693, 789, 1093, 1100
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	772
Zsp2I	ATGCAT	1 cut(s)	931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.