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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G60460 AT1G60460 AT1G60460 AT1G60460 AT1G60460 |
| fragaria_vesca | FvH4_4g34180 FvH4_4g34230 FvH4_4g34230 FvH4_4g34230 |
| malus_domestica | MD16G1094900.v1.1 |
| prunus_persica | Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1 Prupe.1G251700_v2.0.a1 |
| pyrus_communis | pycom16g08070 |
| rosa_chinensis | RchiOBHm_Chr4g0443681 RchiOBHm_Chr4g0443691 RchiOBHm_Chr7g0214331 |
| rosa_laevigata | RLG00000005902 |
| rosa_multiflora | Rmu_sc0001426.1_g000015 Rmu_sc0001426.1_g000016 |
| rosa_roxburghii | Rroxscaffold_5G00384230 |
| rosa_samantha | Rh4AG406200 Rh4BG417200 Rh4CG431700 Rh4DG412800 |
| rosa_wichuraiana | Rw4G034880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 650 |
| AccI | GTMKAC | 1 cut(s) | 37 |
| AccII | CGCG | 1 cut(s) | 72 |
| AciI | CCGC | 3 cut(s) | 70, 119, 216 |
| AclI | AACGTT | 1 cut(s) | 436 |
| AclWI | GGATC | 3 cut(s) | 295, 310, 373 |
| AcsI | RAATTY | 3 cut(s) | 138, 995, 1126 |
| AcyI | GRCGYC | 1 cut(s) | 651 |
| AfaI | GTAC | 1 cut(s) | 631 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1169 |
| AflIII | ACRYGT | 1 cut(s) | 644 |
| AgeI | ACCGGT | 1 cut(s) | 268 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 98 |
| AjnI | CCWGG | 2 cut(s) | 361, 1299 |
| AleI | CACNNNNGTG | 1 cut(s) | 296 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 28 |
| AluBI | AGCT | 7 cut(s) | 31, 168, 188, 196, 337, 422, 593 |
| AluI | AGCT | 7 cut(s) | 31, 168, 188, 196, 337, 422, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 1115 |
| Alw26I | GTCTC | 1 cut(s) | 1317 |
| AlwI | GGATC | 3 cut(s) | 295, 310, 373 |
| AoxI | GGCC | 1 cut(s) | 448 |
| ApeKI | GCWGC | 1 cut(s) | 168 |
| ApoI | RAATTY | 3 cut(s) | 138, 995, 1126 |
| AsiGI | ACCGGT | 1 cut(s) | 268 |
| AspLEI | GCGC | 2 cut(s) | 74, 653 |
| AsuHPI | GGTGA | 4 cut(s) | 230, 283, 678, 1346 |
| AsuII | TTCGAA | 1 cut(s) | 136 |
| AxyI | CCTNAGG | 1 cut(s) | 638 |
| BaeGI | GKGCMC | 2 cut(s) | 1048, 1075 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 144, 177 |
| BanI | GGYRCC | 1 cut(s) | 650 |
| BbsI | GAAGAC | 2 cut(s) | 462, 1200 |
| Bbv12I | GWGCWC | 1 cut(s) | 1115 |
| BbvI | GCAGC | 1 cut(s) | 155 |
| BccI | CCATC | 2 cut(s) | 238, 949 |
| BceAI | ACGGC | 1 cut(s) | 549 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1122, 1156 |
| BciT130I | CCWGG | 2 cut(s) | 363, 1301 |
| BciVI | GTATCC | 1 cut(s) | 145 |
| BclI | TGATCA | 2 cut(s) | 967, 1291 |
| BcoDI | GTCTC | 1 cut(s) | 1317 |
| BfaI | CTAG | 1 cut(s) | 1098 |
| BfmI | CTRYAG | 2 cut(s) | 38, 88 |
| BfoI | RGCGCY | 1 cut(s) | 654 |
| BfuI | GTATCC | 1 cut(s) | 145 |
| BisI | GCNGC | 2 cut(s) | 70, 169 |
| BlpI | GCTNAGC | 1 cut(s) | 345 |
| BlsI | GCNGC | 2 cut(s) | 71, 170 |
| BmcAI | AGTACT | 1 cut(s) | 631 |
| Bme1390I | CCNGG | 2 cut(s) | 363, 1301 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 98 |
| BmiI | GGNNCC | 1 cut(s) | 652 |
| BmrFI | CCNGG | 2 cut(s) | 363, 1301 |
| BmsI | GCATC | 6 cut(s) | 56, 228, 532, 867, 948, 1330 |
| BpiI | GAAGAC | 2 cut(s) | 462, 1200 |
| BpmI | CTGGAG | 2 cut(s) | 561, 1050 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 345 |
| Bpu14I | TTCGAA | 1 cut(s) | 136 |
| BpuEI | CTTGAG | 3 cut(s) | 512, 1040, 1299 |
| BsaHI | GRCGYC | 1 cut(s) | 651 |
| BsaI | GGTCTC | 1 cut(s) | 1317 |
| BsaWI | WCCGGW | 1 cut(s) | 268 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1169 |
| Bse118I | RCCGGY | 1 cut(s) | 268 |
| Bse1I | ACTGG | 4 cut(s) | 15, 160, 544, 740 |
| Bse21I | CCTNAGG | 1 cut(s) | 638 |
| Bse3DI | GCAATG | 1 cut(s) | 6 |
| BseBI | CCWGG | 2 cut(s) | 363, 1301 |
| BseGI | GGATG | 3 cut(s) | 361, 882, 1345 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1169 |
| BseMI | GCAATG | 1 cut(s) | 6 |
| BseMII | CTCAG | 4 cut(s) | 336, 432, 629, 904 |
| BseNI | ACTGG | 4 cut(s) | 15, 160, 544, 740 |
| BseRI | GAGGAG | 1 cut(s) | 191 |
| BseSI | GKGCMC | 2 cut(s) | 1048, 1075 |
| BseXI | GCAGC | 1 cut(s) | 155 |
| Bsh1236I | CGCG | 1 cut(s) | 72 |
| BshFI | GGCC | 1 cut(s) | 450 |
| BshNI | GGYRCC | 1 cut(s) | 650 |
| BshTI | ACCGGT | 1 cut(s) | 268 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1115 |
| BsiSI | CCGG | 2 cut(s) | 109, 269 |
| BslFI | GGGAC | 1 cut(s) | 550 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1169 |
| BsmAI | GTCTC | 1 cut(s) | 1317 |
| BsmFI | GGGAC | 1 cut(s) | 550 |
| BsmI | GAATGC | 1 cut(s) | 1145 |
| BsnI | GGCC | 1 cut(s) | 450 |
| Bso31I | GGTCTC | 1 cut(s) | 1317 |
| Bsp119I | TTCGAA | 1 cut(s) | 136 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1048, 1075, 1115 |
| Bsp143I | GATC | 8 cut(s) | 113, 300, 315, 365, 967, 1078, 1212, 1291 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 345 |
| BspACI | CCGC | 3 cut(s) | 70, 119, 216 |
| BspANI | GGCC | 1 cut(s) | 450 |
| BspCNI | CTCAG | 4 cut(s) | 337, 431, 630, 903 |
| BspFNI | CGCG | 1 cut(s) | 72 |
| BspLI | GGNNCC | 1 cut(s) | 652 |
| BspMAI | CTGCAG | 1 cut(s) | 92 |
| BspPI | GGATC | 3 cut(s) | 295, 310, 373 |
| BspT104I | TTCGAA | 1 cut(s) | 136 |
| BspT107I | GGYRCC | 1 cut(s) | 650 |
| BspTNI | GGTCTC | 1 cut(s) | 1317 |
| BsrDI | GCAATG | 1 cut(s) | 6 |
| BsrFI | RCCGGY | 1 cut(s) | 268 |
| BsrI | ACTGG | 4 cut(s) | 15, 160, 544, 740 |
| BssAI | RCCGGY | 1 cut(s) | 268 |
| BssMI | GATC | 8 cut(s) | 113, 300, 315, 365, 967, 1078, 1212, 1291 |
| BssNI | GRCGYC | 1 cut(s) | 651 |
| Bst2UI | CCWGG | 2 cut(s) | 363, 1301 |
| Bst4CI | ACNGT | 4 cut(s) | 42, 298, 1070, 1199 |
| BstACI | GRCGYC | 1 cut(s) | 651 |
| BstBI | TTCGAA | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 2 cut(s) | 390, 550 |
| BstDEI | CTNAG | 5 cut(s) | 345, 418, 638, 890, 1040 |
| BstF5I | GGATG | 3 cut(s) | 361, 882, 1345 |
| BstFNI | CGCG | 1 cut(s) | 72 |
| BstH2I | RGCGCY | 1 cut(s) | 654 |
| BstHHI | GCGC | 2 cut(s) | 74, 653 |
| BstKTI | GATC | 8 cut(s) | 116, 303, 318, 368, 970, 1081, 1215, 1294 |
| BstMAI | GTCTC | 1 cut(s) | 1317 |
| BstMBI | GATC | 8 cut(s) | 113, 300, 315, 365, 967, 1078, 1212, 1291 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 118, 504, 958 |
| BstNI | CCWGG | 2 cut(s) | 363, 1301 |
| BstNSI | RCATGY | 3 cut(s) | 552, 648, 1028 |
| BstSCI | CCNGG | 2 cut(s) | 361, 1299 |
| BstSFI | CTRYAG | 2 cut(s) | 38, 88 |
| BstSLI | GKGCMC | 2 cut(s) | 1048, 1075 |
| BstUI | CGCG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 1 cut(s) | 155 |
| BstV2I | GAAGAC | 2 cut(s) | 462, 1200 |
| BstX2I | RGATCY | 1 cut(s) | 315 |
| BstYI | RGATCY | 1 cut(s) | 315 |
| Bsu36I | CCTNAGG | 1 cut(s) | 638 |
| BsuI | GTATCC | 1 cut(s) | 145 |
| BsuRI | GGCC | 1 cut(s) | 450 |
| BtsCI | GGATG | 3 cut(s) | 361, 882, 1345 |
| Cac8I | GCNNGC | 2 cut(s) | 390, 550 |
| CfoI | GCGC | 2 cut(s) | 74, 653 |
| Cfr10I | RCCGGY | 1 cut(s) | 268 |
| Csp6I | GTAC | 1 cut(s) | 630 |
| CspAI | ACCGGT | 1 cut(s) | 268 |
| CviAII | CATG | 9 cut(s) | 350, 473, 504, 549, 645, 1025, 1049, 1164, 1231 |
| CviQI | GTAC | 1 cut(s) | 630 |
| DdeI | CTNAG | 5 cut(s) | 345, 418, 638, 890, 1040 |
| DinI | GGCGCC | 1 cut(s) | 652 |
| DpnI | GATC | 8 cut(s) | 115, 302, 317, 367, 969, 1080, 1214, 1293 |
| DpnII | GATC | 8 cut(s) | 113, 300, 315, 365, 967, 1078, 1212, 1291 |
| DraI | TTTAAA | 1 cut(s) | 441 |
| DriI | GACNNNNNGTC | 1 cut(s) | 98 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 98 |
| EciI | GGCGGA | 1 cut(s) | 108 |
| Eco147I | AGGCCT | 1 cut(s) | 450 |
| Eco31I | GGTCTC | 1 cut(s) | 1317 |
| Eco81I | CCTNAGG | 1 cut(s) | 638 |
| EcoRII | CCWGG | 2 cut(s) | 361, 1299 |
| EcoT22I | ATGCAT | 1 cut(s) | 790 |
| EgeI | GGCGCC | 1 cut(s) | 652 |
| EheI | GGCGCC | 1 cut(s) | 652 |
| FaeI | CATG | 9 cut(s) | 353, 476, 507, 552, 648, 1028, 1052, 1167, 1234 |
| FaqI | GGGAC | 1 cut(s) | 550 |
| FatI | CATG | 9 cut(s) | 349, 472, 503, 548, 644, 1024, 1048, 1163, 1230 |
| FauNDI | CATATG | 1 cut(s) | 817 |
| FbaI | TGATCA | 2 cut(s) | 967, 1291 |
| FblI | GTMKAC | 1 cut(s) | 37 |
| Fnu4HI | GCNGC | 2 cut(s) | 70, 169 |
| FokI | GGATG | 3 cut(s) | 368, 889, 1352 |
| Fsp4HI | GCNGC | 2 cut(s) | 70, 169 |
| FspBI | CTAG | 1 cut(s) | 1098 |
| GlaI | GCGC | 2 cut(s) | 73, 652 |
| GluI | GCNGC | 2 cut(s) | 70, 169 |
| GsuI | CTGGAG | 2 cut(s) | 561, 1050 |
| HaeII | RGCGCY | 1 cut(s) | 654 |
| HaeIII | GGCC | 1 cut(s) | 450 |
| HapII | CCGG | 2 cut(s) | 109, 269 |
| HhaI | GCGC | 2 cut(s) | 74, 653 |
| Hin1I | GRCGYC | 1 cut(s) | 651 |
| Hin1II | CATG | 9 cut(s) | 353, 476, 507, 552, 648, 1028, 1052, 1167, 1234 |
| Hin6I | GCGC | 2 cut(s) | 72, 651 |
| HinP1I | GCGC | 2 cut(s) | 72, 651 |
| HincII | GTYRAC | 1 cut(s) | 902 |
| HindII | GTYRAC | 1 cut(s) | 902 |
| HindIII | AAGCTT | 2 cut(s) | 186, 194 |
| HinfI | GANTC | 7 cut(s) | 93, 281, 403, 500, 578, 1121, 1304 |
| HpaII | CCGG | 2 cut(s) | 109, 269 |
| HphI | GGTGA | 4 cut(s) | 230, 283, 678, 1346 |
| Hpy166II | GTNNAC | 4 cut(s) | 38, 902, 1160, 1184 |
| Hpy188I | TCNGA | 7 cut(s) | 79, 151, 280, 577, 619, 876, 1133 |
| Hpy188III | TCNNGA | 5 cut(s) | 26, 369, 431, 1064, 1316 |
| Hpy8I | GTNNAC | 4 cut(s) | 38, 902, 1160, 1184 |
| Hpy99I | CGWCG | 2 cut(s) | 83, 104 |
| HpyAV | CCTTC | 5 cut(s) | 32, 132, 709, 1009, 1325 |
| HpyCH4III | ACNGT | 4 cut(s) | 42, 298, 1070, 1199 |
| HpyCH4IV | ACGT | 1 cut(s) | 436 |
| HpyCH4V | TGCA | 9 cut(s) | 56, 90, 201, 241, 329, 788, 961, 1001, 1085 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 118, 504, 958 |
| HpyF3I | CTNAG | 5 cut(s) | 345, 418, 638, 890, 1040 |
| HpySE526I | ACGT | 1 cut(s) | 436 |
| Hsp92I | GRCGYC | 1 cut(s) | 651 |
| Hsp92II | CATG | 9 cut(s) | 353, 476, 507, 552, 648, 1028, 1052, 1167, 1234 |
| HspAI | GCGC | 2 cut(s) | 72, 651 |
| KasI | GGCGCC | 1 cut(s) | 650 |
| Ksp22I | TGATCA | 2 cut(s) | 967, 1291 |
| Kzo9I | GATC | 8 cut(s) | 113, 300, 315, 365, 967, 1078, 1212, 1291 |
| LmnI | GCTCC | 3 cut(s) | 520, 772, 1118 |
| Lsp1109I | GCAGC | 1 cut(s) | 155 |
| LweI | GCATC | 6 cut(s) | 56, 228, 532, 867, 948, 1330 |
| MaeI | CTAG | 1 cut(s) | 1098 |
| MaeII | ACGT | 1 cut(s) | 436 |
| MaeIII | GTNAC | 4 cut(s) | 258, 583, 931, 1064 |
| MalI | GATC | 8 cut(s) | 115, 302, 317, 367, 969, 1080, 1214, 1293 |
| MboI | GATC | 8 cut(s) | 113, 300, 315, 365, 967, 1078, 1212, 1291 |
| MboII | GAAGA | 6 cut(s) | 42, 467, 1028, 1148, 1205, 1298 |
| MflI | RGATCY | 1 cut(s) | 315 |
| MhlI | GDGCHC | 3 cut(s) | 1048, 1075, 1115 |
| Mly113I | GGCGCC | 1 cut(s) | 651 |
| MlyI | GAGTC | 3 cut(s) | 87, 509, 1115 |
| MmeI | TCCRAC | 5 cut(s) | 102, 142, 854, 1140, 1295 |
| Mph1103I | ATGCAT | 1 cut(s) | 790 |
| MseI | TTAA | 7 cut(s) | 44, 440, 468, 722, 828, 882, 993 |
| MslI | CAYNNNNRTG | 3 cut(s) | 296, 354, 1229 |
| MspA1I | CMGCKG | 1 cut(s) | 337 |
| MspI | CCGG | 2 cut(s) | 109, 269 |
| MspR9I | CCNGG | 2 cut(s) | 363, 1301 |
| Mva1269I | GAATGC | 1 cut(s) | 1145 |
| MvaI | CCWGG | 2 cut(s) | 363, 1301 |
| MvnI | CGCG | 1 cut(s) | 72 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 118, 504, 958 |
| NarI | GGCGCC | 1 cut(s) | 651 |
| NdeI | CATATG | 1 cut(s) | 817 |
| NdeII | GATC | 8 cut(s) | 113, 300, 315, 365, 967, 1078, 1212, 1291 |
| NlaIII | CATG | 9 cut(s) | 353, 476, 507, 552, 648, 1028, 1052, 1167, 1234 |
| NlaIV | GGNNCC | 1 cut(s) | 652 |
| NmuCI | GTSAC | 2 cut(s) | 258, 1064 |
| NsiI | ATGCAT | 1 cut(s) | 790 |
| NspI | RCATGY | 3 cut(s) | 552, 648, 1028 |
| NspV | TTCGAA | 1 cut(s) | 136 |
| OliI | CACNNNNGTG | 1 cut(s) | 296 |
| PaeI | GCATGC | 1 cut(s) | 552 |
| PceI | AGGCCT | 1 cut(s) | 450 |
| PciI | ACATGT | 1 cut(s) | 644 |
| PctI | GAATGC | 1 cut(s) | 1145 |
| PfeI | GAWTC | 4 cut(s) | 281, 403, 578, 1304 |
| PfoI | TCCNGGA | 2 cut(s) | 361, 1299 |
| PinAI | ACCGGT | 1 cut(s) | 268 |
| PkrI | GCNGC | 2 cut(s) | 71, 170 |
| PleI | GAGTC | 3 cut(s) | 87, 508, 1115 |
| PluTI | GGCGCC | 1 cut(s) | 654 |
| PpsI | GAGTC | 3 cut(s) | 87, 508, 1115 |
| PscI | ACATGT | 1 cut(s) | 644 |
| Psp1406I | AACGTT | 1 cut(s) | 436 |
| Psp6I | CCWGG | 2 cut(s) | 361, 1299 |
| PspGI | CCWGG | 2 cut(s) | 361, 1299 |
| PspN4I | GGNNCC | 1 cut(s) | 652 |
| PstI | CTGCAG | 1 cut(s) | 92 |
| PsuI | RGATCY | 1 cut(s) | 315 |
| PvuII | CAGCTG | 1 cut(s) | 337 |
| RsaI | GTAC | 1 cut(s) | 631 |
| RsaNI | GTAC | 1 cut(s) | 630 |
| RseI | CAYNNNNRTG | 3 cut(s) | 296, 354, 1229 |
| SaqAI | TTAA | 7 cut(s) | 44, 440, 468, 722, 828, 882, 993 |
| SatI | GCNGC | 2 cut(s) | 70, 169 |
| Sau3AI | GATC | 8 cut(s) | 113, 300, 315, 365, 967, 1078, 1212, 1291 |
| ScaI | AGTACT | 1 cut(s) | 631 |
| SchI | GAGTC | 3 cut(s) | 87, 509, 1115 |
| ScrFI | CCNGG | 2 cut(s) | 363, 1301 |
| SduI | GDGCHC | 3 cut(s) | 1048, 1075, 1115 |
| SfaNI | GCATC | 6 cut(s) | 56, 228, 532, 867, 948, 1330 |
| SfcI | CTRYAG | 2 cut(s) | 38, 88 |
| SfoI | GGCGCC | 1 cut(s) | 652 |
| SfuI | TTCGAA | 1 cut(s) | 136 |
| SgrAI | CRCCGGYG | 1 cut(s) | 268 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 296, 354, 1229 |
| SmlI | CTYRAG | 3 cut(s) | 527, 1055, 1314 |
| SmoI | CTYRAG | 3 cut(s) | 527, 1055, 1314 |
| SphI | GCATGC | 1 cut(s) | 552 |
| SseBI | AGGCCT | 1 cut(s) | 450 |
| SsiI | CCGC | 3 cut(s) | 70, 119, 216 |
| SspDI | GGCGCC | 1 cut(s) | 650 |
| SspMI | CTAG | 1 cut(s) | 1098 |
| StuI | AGGCCT | 1 cut(s) | 450 |
| StyD4I | CCNGG | 2 cut(s) | 361, 1299 |
| TaaI | ACNGT | 4 cut(s) | 42, 298, 1070, 1199 |
| TaiI | ACGT | 1 cut(s) | 439 |
| TaqI | TCGA | 1 cut(s) | 136 |
| TatI | WGTACW | 1 cut(s) | 629 |
| TauI | GCSGC | 1 cut(s) | 72 |
| TfiI | GAWTC | 4 cut(s) | 281, 403, 578, 1304 |
| Tru1I | TTAA | 7 cut(s) | 44, 440, 468, 722, 828, 882, 993 |
| Tru9I | TTAA | 7 cut(s) | 44, 440, 468, 722, 828, 882, 993 |
| TseFI | GTSAC | 2 cut(s) | 258, 1064 |
| TseI | GCWGC | 1 cut(s) | 168 |
| Tsp45I | GTSAC | 2 cut(s) | 258, 1064 |
| TspDTI | ATGAA | 5 cut(s) | 17, 390, 411, 1247, 1344 |
| TspGWI | ACGGA | 3 cut(s) | 88, 246, 602 |
| XapI | RAATTY | 3 cut(s) | 138, 995, 1126 |
| XceI | RCATGY | 3 cut(s) | 552, 648, 1028 |
| XmiI | GTMKAC | 1 cut(s) | 37 |
| XspI | CTAG | 1 cut(s) | 1098 |
| ZrmI | AGTACT | 1 cut(s) | 631 |
| Zsp2I | ATGCAT | 1 cut(s) | 790 |