Rh4DG412800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
62384123 .. 62387991
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG412800.1

Sequence Viewer

Length: 1365 bp
ATGAACATTGCTTCCAGTTCCCTTCCAGAGCTGTGTCTACAGTTAATTTCTTCTGCATTTCAACGATGCCGCGCTTCCGACGACCTCTGCAGACTCTCCGTCGTTCTCCGGCGATCTCCGCCTTCCAATCTCGTTCGAATTTCAGTTTCGGATACTGGTGTTGGAAGCTGCGTGGAGGAGTTTGAAGCTTTGAAGCTTTGCAGGGAGGCTTTTGGCGGTGAGATTTGGGGTGTTATGATGCAGATGGATTGCTTTCCGTCACAACCACCGGTGAGTTCTGATTCTAACGCCACAACTGTGATCCTCATTCTAAAGATCCCTAATGTTGCAATTCAGCTGGTGGCTGAGCATGGGGATGTTCCTGGATCACGATATGAAAGTGTTTTGCTGGCAAATGAATGGAATCCTTTACCTTTCTCAGCTTCAAATCTTGAACGTTTAAAGTCAGGCCTTGAAGACTATGTTTTTAAGCATGGAAATACATTAGGAAAAAAATGCGAGTCATGCTTCTCAAATTGGGAGCATCTCAAGGTTGGGACTGGAGTAGCATGCCACACAGAAAGCCGTAGATATTCTGAATCAGTTACGGAAGCTGTGATTGTAATAAGTGAAATATCAGAGATAGCAAGTACTTGCCTGAGGACATGTGGCGCCAAAACAGAGGTTTTGTATTTCAAAGATTTCTCACCTTGCCCAATTTCCCAATCATCTGTGAAGGCATTAACAAGCATTGACTGGAAAAGTTATGGATTGACTTTTGGGGGCGTTGTGGAGCAGGGTGGCTATGCATTACTGAAATGGGATAACTTGCCACCATATGTTCAAATTAACATTTCCCTCCACCACTACCATAACCAATATCCAAAATTATGTCGGATGCTTAATTTTCTCAGCATTAGTCAACTTTTCCCTGAAATGCTTTTTGTTATGGTTACAACACCATCAGCAAGGCTAAAGATGCAACCTGATCAAAAACTTGTAAAAAAGGCAGTTAAATTTGCATTGAATGATTTGAAGGACAAACATGCTGGAGTTCTTCTAAGTGCCCATGCCCTCAAGGTTCGTGACTGTGCCCCTGATCTTGCAAAAACAATTTCTAGCCTAATCCTGTGCTCCAACGACTCAAATTTCCGAGAAGAATGCTTTTCTTTTCTCGGTTTACCATGTCAAGGAGTAGGAAGTGAACTTGTTGAAGACTGTATAAAGGAAAAGATCATTTCAGTCATAGACATGAACGACAGAGAACAACCCCAGAGAAGCAAAGAAGTTCCAACTTTTCTTTTTGAAGATGATCACTTCCAGGATTCAGGGTCTCAAGATGAGGAATATGAAGGTGAGGATGCTTTTACCTCTATGGATATATAA

Protein Analysis

454

Amino Acids

50.44

Weight (kDa)

5.21

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 650
AccI GTMKAC 1 cut(s) 37
AccII CGCG 1 cut(s) 72
AciI CCGC 3 cut(s) 70, 119, 216
AclI AACGTT 1 cut(s) 436
AclWI GGATC 3 cut(s) 295, 310, 373
AcsI RAATTY 3 cut(s) 138, 995, 1126
AcyI GRCGYC 1 cut(s) 651
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 1 cut(s) 1169
AflIII ACRYGT 1 cut(s) 644
AgeI ACCGGT 1 cut(s) 268
AhdI GACNNNNNGTC 1 cut(s) 98
AjnI CCWGG 2 cut(s) 361, 1299
AleI CACNNNNGTG 1 cut(s) 296
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 7 cut(s) 31, 168, 188, 196, 337, 422, 593
AluI AGCT 7 cut(s) 31, 168, 188, 196, 337, 422, 593
Alw21I GWGCWC 1 cut(s) 1115
Alw26I GTCTC 1 cut(s) 1317
AlwI GGATC 3 cut(s) 295, 310, 373
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 3 cut(s) 138, 995, 1126
AsiGI ACCGGT 1 cut(s) 268
AspLEI GCGC 2 cut(s) 74, 653
AsuHPI GGTGA 4 cut(s) 230, 283, 678, 1346
AsuII TTCGAA 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 638
BaeGI GKGCMC 2 cut(s) 1048, 1075
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BanI GGYRCC 1 cut(s) 650
BbsI GAAGAC 2 cut(s) 462, 1200
Bbv12I GWGCWC 1 cut(s) 1115
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 238, 949
BceAI ACGGC 1 cut(s) 549
BcgI CGANNNNNNTGC 2 cut(s) 1122, 1156
BciT130I CCWGG 2 cut(s) 363, 1301
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 2 cut(s) 967, 1291
BcoDI GTCTC 1 cut(s) 1317
BfaI CTAG 1 cut(s) 1098
BfmI CTRYAG 2 cut(s) 38, 88
BfoI RGCGCY 1 cut(s) 654
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 2 cut(s) 70, 169
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 2 cut(s) 71, 170
BmcAI AGTACT 1 cut(s) 631
Bme1390I CCNGG 2 cut(s) 363, 1301
BmeRI GACNNNNNGTC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 652
BmrFI CCNGG 2 cut(s) 363, 1301
BmsI GCATC 6 cut(s) 56, 228, 532, 867, 948, 1330
BpiI GAAGAC 2 cut(s) 462, 1200
BpmI CTGGAG 2 cut(s) 561, 1050
Bpu1102I GCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 3 cut(s) 512, 1040, 1299
BsaHI GRCGYC 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 1317
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 1169
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 4 cut(s) 15, 160, 544, 740
Bse21I CCTNAGG 1 cut(s) 638
Bse3DI GCAATG 1 cut(s) 6
BseBI CCWGG 2 cut(s) 363, 1301
BseGI GGATG 3 cut(s) 361, 882, 1345
BseLI CCNNNNNNNGG 1 cut(s) 1169
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 4 cut(s) 336, 432, 629, 904
BseNI ACTGG 4 cut(s) 15, 160, 544, 740
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 2 cut(s) 1048, 1075
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 450
BshNI GGYRCC 1 cut(s) 650
BshTI ACCGGT 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 1115
BsiSI CCGG 2 cut(s) 109, 269
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 1169
BsmAI GTCTC 1 cut(s) 1317
BsmFI GGGAC 1 cut(s) 550
BsmI GAATGC 1 cut(s) 1145
BsnI GGCC 1 cut(s) 450
Bso31I GGTCTC 1 cut(s) 1317
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 3 cut(s) 1048, 1075, 1115
Bsp143I GATC 8 cut(s) 113, 300, 315, 365, 967, 1078, 1212, 1291
Bsp1720I GCTNAGC 1 cut(s) 345
BspACI CCGC 3 cut(s) 70, 119, 216
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 4 cut(s) 337, 431, 630, 903
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 652
BspMAI CTGCAG 1 cut(s) 92
BspPI GGATC 3 cut(s) 295, 310, 373
BspT104I TTCGAA 1 cut(s) 136
BspT107I GGYRCC 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 1317
BsrDI GCAATG 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 4 cut(s) 15, 160, 544, 740
BssAI RCCGGY 1 cut(s) 268
BssMI GATC 8 cut(s) 113, 300, 315, 365, 967, 1078, 1212, 1291
BssNI GRCGYC 1 cut(s) 651
Bst2UI CCWGG 2 cut(s) 363, 1301
Bst4CI ACNGT 4 cut(s) 42, 298, 1070, 1199
BstACI GRCGYC 1 cut(s) 651
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 390, 550
BstDEI CTNAG 5 cut(s) 345, 418, 638, 890, 1040
BstF5I GGATG 3 cut(s) 361, 882, 1345
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 2 cut(s) 74, 653
BstKTI GATC 8 cut(s) 116, 303, 318, 368, 970, 1081, 1215, 1294
BstMAI GTCTC 1 cut(s) 1317
BstMBI GATC 8 cut(s) 113, 300, 315, 365, 967, 1078, 1212, 1291
BstMWI GCNNNNNNNGC 3 cut(s) 118, 504, 958
BstNI CCWGG 2 cut(s) 363, 1301
BstNSI RCATGY 3 cut(s) 552, 648, 1028
BstSCI CCNGG 2 cut(s) 361, 1299
BstSFI CTRYAG 2 cut(s) 38, 88
BstSLI GKGCMC 2 cut(s) 1048, 1075
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 2 cut(s) 462, 1200
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
Bsu36I CCTNAGG 1 cut(s) 638
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 450
BtsCI GGATG 3 cut(s) 361, 882, 1345
Cac8I GCNNGC 2 cut(s) 390, 550
CfoI GCGC 2 cut(s) 74, 653
Cfr10I RCCGGY 1 cut(s) 268
Csp6I GTAC 1 cut(s) 630
CspAI ACCGGT 1 cut(s) 268
CviAII CATG 9 cut(s) 350, 473, 504, 549, 645, 1025, 1049, 1164, 1231
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 5 cut(s) 345, 418, 638, 890, 1040
DinI GGCGCC 1 cut(s) 652
DpnI GATC 8 cut(s) 115, 302, 317, 367, 969, 1080, 1214, 1293
DpnII GATC 8 cut(s) 113, 300, 315, 365, 967, 1078, 1212, 1291
DraI TTTAAA 1 cut(s) 441
DriI GACNNNNNGTC 1 cut(s) 98
Eam1105I GACNNNNNGTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 1317
Eco81I CCTNAGG 1 cut(s) 638
EcoRII CCWGG 2 cut(s) 361, 1299
EcoT22I ATGCAT 1 cut(s) 790
EgeI GGCGCC 1 cut(s) 652
EheI GGCGCC 1 cut(s) 652
FaeI CATG 9 cut(s) 353, 476, 507, 552, 648, 1028, 1052, 1167, 1234
FaqI GGGAC 1 cut(s) 550
FatI CATG 9 cut(s) 349, 472, 503, 548, 644, 1024, 1048, 1163, 1230
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 2 cut(s) 967, 1291
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 70, 169
FokI GGATG 3 cut(s) 368, 889, 1352
Fsp4HI GCNGC 2 cut(s) 70, 169
FspBI CTAG 1 cut(s) 1098
GlaI GCGC 2 cut(s) 73, 652
GluI GCNGC 2 cut(s) 70, 169
GsuI CTGGAG 2 cut(s) 561, 1050
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 1 cut(s) 450
HapII CCGG 2 cut(s) 109, 269
HhaI GCGC 2 cut(s) 74, 653
Hin1I GRCGYC 1 cut(s) 651
Hin1II CATG 9 cut(s) 353, 476, 507, 552, 648, 1028, 1052, 1167, 1234
Hin6I GCGC 2 cut(s) 72, 651
HinP1I GCGC 2 cut(s) 72, 651
HincII GTYRAC 1 cut(s) 902
HindII GTYRAC 1 cut(s) 902
HindIII AAGCTT 2 cut(s) 186, 194
HinfI GANTC 7 cut(s) 93, 281, 403, 500, 578, 1121, 1304
HpaII CCGG 2 cut(s) 109, 269
HphI GGTGA 4 cut(s) 230, 283, 678, 1346
Hpy166II GTNNAC 4 cut(s) 38, 902, 1160, 1184
Hpy188I TCNGA 7 cut(s) 79, 151, 280, 577, 619, 876, 1133
Hpy188III TCNNGA 5 cut(s) 26, 369, 431, 1064, 1316
Hpy8I GTNNAC 4 cut(s) 38, 902, 1160, 1184
Hpy99I CGWCG 2 cut(s) 83, 104
HpyAV CCTTC 5 cut(s) 32, 132, 709, 1009, 1325
HpyCH4III ACNGT 4 cut(s) 42, 298, 1070, 1199
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 9 cut(s) 56, 90, 201, 241, 329, 788, 961, 1001, 1085
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 504, 958
HpyF3I CTNAG 5 cut(s) 345, 418, 638, 890, 1040
HpySE526I ACGT 1 cut(s) 436
Hsp92I GRCGYC 1 cut(s) 651
Hsp92II CATG 9 cut(s) 353, 476, 507, 552, 648, 1028, 1052, 1167, 1234
HspAI GCGC 2 cut(s) 72, 651
KasI GGCGCC 1 cut(s) 650
Ksp22I TGATCA 2 cut(s) 967, 1291
Kzo9I GATC 8 cut(s) 113, 300, 315, 365, 967, 1078, 1212, 1291
LmnI GCTCC 3 cut(s) 520, 772, 1118
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 6 cut(s) 56, 228, 532, 867, 948, 1330
MaeI CTAG 1 cut(s) 1098
MaeII ACGT 1 cut(s) 436
MaeIII GTNAC 4 cut(s) 258, 583, 931, 1064
MalI GATC 8 cut(s) 115, 302, 317, 367, 969, 1080, 1214, 1293
MboI GATC 8 cut(s) 113, 300, 315, 365, 967, 1078, 1212, 1291
MboII GAAGA 6 cut(s) 42, 467, 1028, 1148, 1205, 1298
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 3 cut(s) 1048, 1075, 1115
Mly113I GGCGCC 1 cut(s) 651
MlyI GAGTC 3 cut(s) 87, 509, 1115
MmeI TCCRAC 5 cut(s) 102, 142, 854, 1140, 1295
Mph1103I ATGCAT 1 cut(s) 790
MseI TTAA 7 cut(s) 44, 440, 468, 722, 828, 882, 993
MslI CAYNNNNRTG 3 cut(s) 296, 354, 1229
MspA1I CMGCKG 1 cut(s) 337
MspI CCGG 2 cut(s) 109, 269
MspR9I CCNGG 2 cut(s) 363, 1301
Mva1269I GAATGC 1 cut(s) 1145
MvaI CCWGG 2 cut(s) 363, 1301
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 118, 504, 958
NarI GGCGCC 1 cut(s) 651
NdeI CATATG 1 cut(s) 817
NdeII GATC 8 cut(s) 113, 300, 315, 365, 967, 1078, 1212, 1291
NlaIII CATG 9 cut(s) 353, 476, 507, 552, 648, 1028, 1052, 1167, 1234
NlaIV GGNNCC 1 cut(s) 652
NmuCI GTSAC 2 cut(s) 258, 1064
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 3 cut(s) 552, 648, 1028
NspV TTCGAA 1 cut(s) 136
OliI CACNNNNGTG 1 cut(s) 296
PaeI GCATGC 1 cut(s) 552
PceI AGGCCT 1 cut(s) 450
PciI ACATGT 1 cut(s) 644
PctI GAATGC 1 cut(s) 1145
PfeI GAWTC 4 cut(s) 281, 403, 578, 1304
PfoI TCCNGGA 2 cut(s) 361, 1299
PinAI ACCGGT 1 cut(s) 268
PkrI GCNGC 2 cut(s) 71, 170
PleI GAGTC 3 cut(s) 87, 508, 1115
PluTI GGCGCC 1 cut(s) 654
PpsI GAGTC 3 cut(s) 87, 508, 1115
PscI ACATGT 1 cut(s) 644
Psp1406I AACGTT 1 cut(s) 436
Psp6I CCWGG 2 cut(s) 361, 1299
PspGI CCWGG 2 cut(s) 361, 1299
PspN4I GGNNCC 1 cut(s) 652
PstI CTGCAG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 315
PvuII CAGCTG 1 cut(s) 337
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
RseI CAYNNNNRTG 3 cut(s) 296, 354, 1229
SaqAI TTAA 7 cut(s) 44, 440, 468, 722, 828, 882, 993
SatI GCNGC 2 cut(s) 70, 169
Sau3AI GATC 8 cut(s) 113, 300, 315, 365, 967, 1078, 1212, 1291
ScaI AGTACT 1 cut(s) 631
SchI GAGTC 3 cut(s) 87, 509, 1115
ScrFI CCNGG 2 cut(s) 363, 1301
SduI GDGCHC 3 cut(s) 1048, 1075, 1115
SfaNI GCATC 6 cut(s) 56, 228, 532, 867, 948, 1330
SfcI CTRYAG 2 cut(s) 38, 88
SfoI GGCGCC 1 cut(s) 652
SfuI TTCGAA 1 cut(s) 136
SgrAI CRCCGGYG 1 cut(s) 268
SmiMI CAYNNNNRTG 3 cut(s) 296, 354, 1229
SmlI CTYRAG 3 cut(s) 527, 1055, 1314
SmoI CTYRAG 3 cut(s) 527, 1055, 1314
SphI GCATGC 1 cut(s) 552
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 3 cut(s) 70, 119, 216
SspDI GGCGCC 1 cut(s) 650
SspMI CTAG 1 cut(s) 1098
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 2 cut(s) 361, 1299
TaaI ACNGT 4 cut(s) 42, 298, 1070, 1199
TaiI ACGT 1 cut(s) 439
TaqI TCGA 1 cut(s) 136
TatI WGTACW 1 cut(s) 629
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 4 cut(s) 281, 403, 578, 1304
Tru1I TTAA 7 cut(s) 44, 440, 468, 722, 828, 882, 993
Tru9I TTAA 7 cut(s) 44, 440, 468, 722, 828, 882, 993
TseFI GTSAC 2 cut(s) 258, 1064
TseI GCWGC 1 cut(s) 168
Tsp45I GTSAC 2 cut(s) 258, 1064
TspDTI ATGAA 5 cut(s) 17, 390, 411, 1247, 1344
TspGWI ACGGA 3 cut(s) 88, 246, 602
XapI RAATTY 3 cut(s) 138, 995, 1126
XceI RCATGY 3 cut(s) 552, 648, 1028
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 1 cut(s) 1098
ZrmI AGTACT 1 cut(s) 631
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.