RLG00000005902

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
2663090 .. 2666850
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005902

Sequence Viewer

Length: 1515 bp
ATGAACATTGCTTCCAGTTCCCTTCCAGAGCTGTGTCTACGGTTAATTTCTTCTGCATTTCAACGATGCCGCGCTTCCGACGACCTCTGCAGACTCTCCGTCGTTCTCCGGCCATCTCCGCCTTCCAATCTCGTTCGAATTTCAGTTTCGGATACTGGTGTTGGAAGCTGCGTGGAGGAGTTTGAAGCTTTGAAGCTTTGCAGGGAGGCTTTTGGCGGTGAGATTTGGGATGGATTGCTTTCCGTCACAACCACCGGTTTTGGTGATAATGAGATATATCACTATGAGTTCAATCTAAAAGAGGCTGTGTCTGCCAGAAGGTTGACCAGGCTGCCTTCGAATCCTAAGAATGGGCAGAAATTCAGTGGGACTGAAGTGTGTCTATCGATTTTCGAAAGCATTGATGTTTTGCTAGGCGAGATTAGTCGCTTCTTTCAGAAGATCCTTATTCTAAAGATCCCTAATGTTGCAATTCAGCTGGTGGCTCAGCATGGGGATGTTCCTGGATCACGATATGAAAGTGTTTTTCTGGCAAATGAATGGAATCCTTTACCTTTCTCAGCCTCAAATCTTGAACGTTTAAAGTCAGGCCTTGAAGACTATATTTTTAAGCATGGAAATACATTAGGAAAAAAATGCGAGTCATGCTTCTCAAATTGGGAGCATCTCAAGGTTGGGGCTGGAGTAGCATGCCACACAGAAAGCCGTAGATATTCTGAATCAGCTATGGAAGCTGTGATTGTAATAAGTGAAATATCAGAGCTAGCAAGTACTTGCCTGAGGTCATGTGGCTCAAAAACAGAGGTTATGTATTTCAAAGATTTTTCACCTTGTCCAATTTCCCAATCATCTGTGAAGGCCTTAACAAGCATTGACTGGAAAAGTTATGGATTGACTTTTGGGGGCGTTGTGGAGCAGGGTGGCAATGCATTACTGAAATGGGATAACTTGCCACGATATGTTCAAATTGACATTTCCCTCCACCACTACCATAACCAATATCCAAAATTATGTTGGATGCTTAATTTTCTCAATATTGGTCAACTTTTTCCTGGAATGCTATTTGTTGTGGTTACAACTGCATCAGCAAGGCTAAAGATGCAACCTGATCAAAAACTTGTAAAAAAGGCAGTTAAATTTGCATTGAATGATTTGAAGGACAAACATGCTGGAGTTCTTCTAAGCGCCCATGCCCTCAAGGTTCGTGACTGTGCCCCTGATCTTGCAAAAACAATTTCTAGCCTAATCCTGTGCTCCAACGACTCAAATTTCCGAGAAGAATGCTTTTCTTTTCTCGGCTTACCATCTCAAGGAGTAGGAAGTGAACTTGTTGAAGACTGTATAAAGGAAAAGATCATTTCAGTCATAGAAATGAACGACAGAGATCAACCCCAGAGAAGCAAAGAAGTTCCAACCTTTCTTTTTGAAGATGATCACTTCCAGGATTCAGGGTCTCAAGATGAGGAATATGATGGTGAGGGTGCGTTTACCTCTATGGAGTCTATGGATATATAA

Protein Analysis

505

Amino Acids

56.07

Weight (kDa)

5.44

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 37
AccII CGCG 1 cut(s) 72
AciI CCGC 3 cut(s) 70, 119, 216
AclI AACGTT 1 cut(s) 577
AclWI GGATC 3 cut(s) 436, 451, 514
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 4 cut(s) 138, 359, 1136, 1267
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 1 cut(s) 772
AfiI CCNNNNNNNGG 2 cut(s) 350, 1310
AgeI ACCGGT 1 cut(s) 254
AhdI GACNNNNNGTC 1 cut(s) 98
AjnI CCWGG 4 cut(s) 326, 502, 1051, 1440
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 8 cut(s) 31, 168, 188, 196, 478, 725, 734, 763
AluI AGCT 8 cut(s) 31, 168, 188, 196, 478, 725, 734, 763
Alw21I GWGCWC 1 cut(s) 1256
Alw26I GTCTC 1 cut(s) 1458
AlwI GGATC 3 cut(s) 436, 451, 514
AoxI GGCC 3 cut(s) 110, 589, 858
ApeKI GCWGC 2 cut(s) 168, 331
ApoI RAATTY 4 cut(s) 138, 359, 1136, 1267
AsiGI ACCGGT 1 cut(s) 254
AspLEI GCGC 2 cut(s) 74, 1187
AsuHPI GGTGA 4 cut(s) 230, 275, 819, 1487
AsuII TTCGAA 3 cut(s) 136, 338, 393
AsuNHI GCTAGC 1 cut(s) 763
AxyI CCTNAGG 1 cut(s) 779
BaeGI GKGCMC 1 cut(s) 1216
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BbsI GAAGAC 2 cut(s) 603, 1341
Bbv12I GWGCWC 1 cut(s) 1256
BbvI GCAGC 2 cut(s) 155, 318
BccI CCATC 4 cut(s) 121, 224, 1312, 1466
BceAI ACGGC 1 cut(s) 690
BcgI CGANNNNNNTGC 2 cut(s) 1263, 1297
BciT130I CCWGG 4 cut(s) 328, 504, 1053, 1442
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 2 cut(s) 1108, 1432
BcoDI GTCTC 1 cut(s) 1458
BfaI CTAG 3 cut(s) 413, 764, 1239
BfmI CTRYAG 1 cut(s) 88
BfoI RGCGCY 1 cut(s) 1188
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 3 cut(s) 70, 169, 332
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 3 cut(s) 71, 170, 333
BmcAI AGTACT 1 cut(s) 772
Bme1390I CCNGG 4 cut(s) 328, 504, 1053, 1442
BmeRI GACNNNNNGTC 1 cut(s) 98
BmrFI CCNGG 4 cut(s) 328, 504, 1053, 1442
BmsI GCATC 5 cut(s) 56, 673, 1008, 1089, 1091
BmtI GCTAGC 1 cut(s) 767
BpiI GAAGAC 2 cut(s) 603, 1341
BpmI CTGGAG 2 cut(s) 702, 1191
Bpu1102I GCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 3 cut(s) 136, 338, 393
BpuEI CTTGAG 4 cut(s) 653, 1181, 1293, 1440
Bsa29I ATCGAT 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 1458
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 1310
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 15, 160, 881
Bse21I CCTNAGG 1 cut(s) 779
Bse3DI GCAATG 2 cut(s) 6, 931
BseBI CCWGG 4 cut(s) 328, 504, 1053, 1442
BseCI ATCGAT 1 cut(s) 386
BseGI GGATG 3 cut(s) 235, 502, 1023
BseLI CCNNNNNNNGG 2 cut(s) 350, 1310
BseMI GCAATG 2 cut(s) 6, 931
BseMII CTCAG 3 cut(s) 500, 573, 770
BseNI ACTGG 3 cut(s) 15, 160, 881
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 1216
BseXI GCAGC 2 cut(s) 155, 318
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 3 cut(s) 112, 591, 860
BshTI ACCGGT 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 1256
BsiSI CCGG 2 cut(s) 109, 255
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 2 cut(s) 350, 1310
BsmAI GTCTC 1 cut(s) 1458
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 2 cut(s) 1062, 1286
BsnI GGCC 3 cut(s) 112, 591, 860
Bso31I GGTCTC 1 cut(s) 1458
Bsp119I TTCGAA 3 cut(s) 136, 338, 393
Bsp1286I GDGCHC 2 cut(s) 1216, 1256
Bsp143I GATC 8 cut(s) 441, 456, 506, 1108, 1219, 1353, 1384, 1432
Bsp1720I GCTNAGC 1 cut(s) 486
BspACI CCGC 3 cut(s) 70, 119, 216
BspANI GGCC 3 cut(s) 112, 591, 860
BspCNI CTCAG 3 cut(s) 499, 572, 771
BspDI ATCGAT 1 cut(s) 386
BspFNI CGCG 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 767
BspPI GGATC 3 cut(s) 436, 451, 514
BspT104I TTCGAA 3 cut(s) 136, 338, 393
BspTNI GGTCTC 1 cut(s) 1458
BsrDI GCAATG 2 cut(s) 6, 931
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 3 cut(s) 15, 160, 881
BssAI RCCGGY 1 cut(s) 254
BssMI GATC 8 cut(s) 441, 456, 506, 1108, 1219, 1353, 1384, 1432
Bst2UI CCWGG 4 cut(s) 328, 504, 1053, 1442
Bst4CI ACNGT 3 cut(s) 42, 1211, 1340
BstBI TTCGAA 3 cut(s) 136, 338, 393
BstC8I GCNNGC 2 cut(s) 691, 765
BstDEI CTNAG 5 cut(s) 345, 486, 559, 779, 1181
BstF5I GGATG 3 cut(s) 235, 502, 1023
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 1188
BstHHI GCGC 2 cut(s) 74, 1187
BstKTI GATC 8 cut(s) 444, 459, 509, 1111, 1222, 1356, 1387, 1435
BstMAI GTCTC 1 cut(s) 1458
BstMBI GATC 8 cut(s) 441, 456, 506, 1108, 1219, 1353, 1384, 1432
BstMWI GCNNNNNNNGC 6 cut(s) 118, 311, 645, 686, 731, 1099
BstNI CCWGG 4 cut(s) 328, 504, 1053, 1442
BstNSI RCATGY 2 cut(s) 693, 1169
BstSCI CCNGG 4 cut(s) 326, 502, 1051, 1440
BstSFI CTRYAG 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 1216
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 155, 318
BstV2I GAAGAC 2 cut(s) 603, 1341
BstX2I RGATCY 2 cut(s) 441, 456
BstYI RGATCY 2 cut(s) 441, 456
Bsu15I ATCGAT 1 cut(s) 386
Bsu36I CCTNAGG 1 cut(s) 779
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 3 cut(s) 112, 591, 860
BsuTUI ATCGAT 1 cut(s) 386
BtsCI GGATG 3 cut(s) 235, 502, 1023
BtsIMutI CAGTG 1 cut(s) 370
Cac8I GCNNGC 2 cut(s) 691, 765
CfoI GCGC 2 cut(s) 74, 1187
Cfr10I RCCGGY 1 cut(s) 254
ClaI ATCGAT 1 cut(s) 386
Csp6I GTAC 1 cut(s) 771
CspAI ACCGGT 1 cut(s) 254
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 7 cut(s) 491, 614, 645, 690, 786, 1166, 1190
CviQI GTAC 1 cut(s) 771
DdeI CTNAG 5 cut(s) 345, 486, 559, 779, 1181
DpnI GATC 8 cut(s) 443, 458, 508, 1110, 1221, 1355, 1386, 1434
DpnII GATC 8 cut(s) 441, 456, 506, 1108, 1219, 1353, 1384, 1432
DraI TTTAAA 1 cut(s) 582
DriI GACNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 110
Eam1105I GACNNNNNGTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 108
Eco147I AGGCCT 2 cut(s) 591, 860
Eco31I GGTCTC 1 cut(s) 1458
Eco57I CTGAAG 1 cut(s) 393
Eco81I CCTNAGG 1 cut(s) 779
EcoRII CCWGG 4 cut(s) 326, 502, 1051, 1440
EcoT22I ATGCAT 1 cut(s) 931
FaeI CATG 7 cut(s) 494, 617, 648, 693, 789, 1169, 1193
FaqI GGGAC 1 cut(s) 382
FatI CATG 7 cut(s) 490, 613, 644, 689, 785, 1165, 1189
FbaI TGATCA 2 cut(s) 1108, 1432
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 70, 169, 332
FokI GGATG 3 cut(s) 242, 509, 1030
Fsp4HI GCNGC 3 cut(s) 70, 169, 332
FspBI CTAG 3 cut(s) 413, 764, 1239
GlaI GCGC 2 cut(s) 73, 1186
GluI GCNGC 3 cut(s) 70, 169, 332
GsuI CTGGAG 2 cut(s) 702, 1191
HaeII RGCGCY 1 cut(s) 1188
HaeIII GGCC 3 cut(s) 112, 591, 860
HapII CCGG 2 cut(s) 109, 255
HhaI GCGC 2 cut(s) 74, 1187
Hin1II CATG 7 cut(s) 494, 617, 648, 693, 789, 1169, 1193
Hin6I GCGC 2 cut(s) 72, 1185
HinP1I GCGC 2 cut(s) 72, 1185
HincII GTYRAC 2 cut(s) 324, 1043
HindII GTYRAC 2 cut(s) 324, 1043
HindIII AAGCTT 2 cut(s) 186, 194
HinfI GANTC 8 cut(s) 93, 340, 544, 641, 719, 1262, 1445, 1499
HpaII CCGG 2 cut(s) 109, 255
HphI GGTGA 4 cut(s) 230, 275, 819, 1487
Hpy166II GTNNAC 5 cut(s) 38, 324, 1043, 1325, 1488
Hpy188I TCNGA 6 cut(s) 79, 151, 438, 718, 760, 1274
Hpy188III TCNNGA 5 cut(s) 26, 510, 572, 1205, 1457
Hpy8I GTNNAC 5 cut(s) 38, 324, 1043, 1325, 1488
Hpy99I CGWCG 2 cut(s) 83, 104
HpyAV CCTTC 6 cut(s) 32, 132, 312, 345, 850, 1150
HpyCH4III ACNGT 3 cut(s) 42, 1211, 1340
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 9 cut(s) 56, 90, 201, 470, 929, 1082, 1102, 1142, 1226
HpyF10VI GCNNNNNNNGC 6 cut(s) 118, 311, 645, 686, 731, 1099
HpyF3I CTNAG 5 cut(s) 345, 486, 559, 779, 1181
HpySE526I ACGT 1 cut(s) 577
Hsp92II CATG 7 cut(s) 494, 617, 648, 693, 789, 1169, 1193
HspAI GCGC 2 cut(s) 72, 1185
Ksp22I TGATCA 2 cut(s) 1108, 1432
Kzo9I GATC 8 cut(s) 441, 456, 506, 1108, 1219, 1353, 1384, 1432
LmnI GCTCC 3 cut(s) 661, 913, 1259
Lsp1109I GCAGC 2 cut(s) 155, 318
LweI GCATC 5 cut(s) 56, 673, 1008, 1089, 1091
MaeI CTAG 3 cut(s) 413, 764, 1239
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 3 cut(s) 244, 1072, 1205
MalI GATC 8 cut(s) 443, 458, 508, 1110, 1221, 1355, 1386, 1434
MboI GATC 8 cut(s) 441, 456, 506, 1108, 1219, 1353, 1384, 1432
MboII GAAGA 7 cut(s) 42, 451, 608, 1169, 1289, 1346, 1439
MflI RGATCY 2 cut(s) 441, 456
MhlI GDGCHC 2 cut(s) 1216, 1256
MlyI GAGTC 4 cut(s) 87, 650, 1256, 1508
MmeI TCCRAC 5 cut(s) 102, 142, 995, 1281, 1436
Mph1103I ATGCAT 1 cut(s) 931
MseI TTAA 6 cut(s) 44, 581, 609, 863, 1023, 1134
MslI CAYNNNNRTG 2 cut(s) 495, 1370
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 2 cut(s) 109, 255
MspR9I CCNGG 4 cut(s) 328, 504, 1053, 1442
Mva1269I GAATGC 2 cut(s) 1062, 1286
MvaI CCWGG 4 cut(s) 328, 504, 1053, 1442
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 6 cut(s) 118, 311, 645, 686, 731, 1099
NdeII GATC 8 cut(s) 441, 456, 506, 1108, 1219, 1353, 1384, 1432
NheI GCTAGC 1 cut(s) 763
NlaIII CATG 7 cut(s) 494, 617, 648, 693, 789, 1169, 1193
NmeAIII GCCGAG 1 cut(s) 1275
NmuCI GTSAC 2 cut(s) 244, 1205
NsiI ATGCAT 1 cut(s) 931
NspI RCATGY 2 cut(s) 693, 1169
NspV TTCGAA 3 cut(s) 136, 338, 393
PaeI GCATGC 1 cut(s) 693
PceI AGGCCT 2 cut(s) 591, 860
PctI GAATGC 2 cut(s) 1062, 1286
PfeI GAWTC 4 cut(s) 340, 544, 719, 1445
PfoI TCCNGGA 3 cut(s) 502, 1051, 1440
PinAI ACCGGT 1 cut(s) 254
PkrI GCNGC 3 cut(s) 71, 170, 333
PleI GAGTC 4 cut(s) 87, 649, 1256, 1507
PpsI GAGTC 4 cut(s) 87, 649, 1256, 1507
Psp1406I AACGTT 1 cut(s) 577
Psp6I CCWGG 4 cut(s) 326, 502, 1051, 1440
PspGI CCWGG 4 cut(s) 326, 502, 1051, 1440
PstI CTGCAG 1 cut(s) 92
PsuI RGATCY 2 cut(s) 441, 456
PvuII CAGCTG 1 cut(s) 478
RsaI GTAC 1 cut(s) 772
RsaNI GTAC 1 cut(s) 771
RseI CAYNNNNRTG 2 cut(s) 495, 1370
SaqAI TTAA 6 cut(s) 44, 581, 609, 863, 1023, 1134
SatI GCNGC 3 cut(s) 70, 169, 332
Sau3AI GATC 8 cut(s) 441, 456, 506, 1108, 1219, 1353, 1384, 1432
ScaI AGTACT 1 cut(s) 772
SchI GAGTC 4 cut(s) 87, 650, 1256, 1508
ScrFI CCNGG 4 cut(s) 328, 504, 1053, 1442
SduI GDGCHC 2 cut(s) 1216, 1256
SfaNI GCATC 5 cut(s) 56, 673, 1008, 1089, 1091
SfcI CTRYAG 1 cut(s) 88
SfuI TTCGAA 3 cut(s) 136, 338, 393
SmiMI CAYNNNNRTG 2 cut(s) 495, 1370
SmlI CTYRAG 4 cut(s) 668, 1196, 1308, 1455
SmoI CTYRAG 4 cut(s) 668, 1196, 1308, 1455
SphI GCATGC 1 cut(s) 693
SseBI AGGCCT 2 cut(s) 591, 860
SsiI CCGC 3 cut(s) 70, 119, 216
SspI AATATT 1 cut(s) 1036
SspMI CTAG 3 cut(s) 413, 764, 1239
StuI AGGCCT 2 cut(s) 591, 860
StyD4I CCNGG 4 cut(s) 326, 502, 1051, 1440
TaaI ACNGT 3 cut(s) 42, 1211, 1340
TaiI ACGT 1 cut(s) 580
TaqI TCGA 4 cut(s) 136, 338, 386, 393
TatI WGTACW 1 cut(s) 770
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 4 cut(s) 340, 544, 719, 1445
Tru1I TTAA 6 cut(s) 44, 581, 609, 863, 1023, 1134
Tru9I TTAA 6 cut(s) 44, 581, 609, 863, 1023, 1134
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 244, 1205
TseI GCWGC 2 cut(s) 168, 331
Tsp45I GTSAC 2 cut(s) 244, 1205
TspDTI ATGAA 4 cut(s) 17, 531, 552, 1388
TspGWI ACGGA 2 cut(s) 88, 232
TspRI CASTG 1 cut(s) 370
XapI RAATTY 4 cut(s) 138, 359, 1136, 1267
XceI RCATGY 2 cut(s) 693, 1169
XcmI CCANNNNNNNNNTGG 1 cut(s) 1011
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 3 cut(s) 413, 764, 1239
ZrmI AGTACT 1 cut(s) 772
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.